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[epi@localhost rpy2]$ pip3 install rpy2
Downloading/unpacking rpy2
Downloading rpy2-2.4.0.tar.gz (160kB): 160kB downloaded
Running setup.py (path:/tmp/pip_build_epi/rpy2/setup.py) egg_info for package rpy2
"/home/epi/Envs/env1/lib64/R/bin/R" CMD config --ldflags
"/home/epi/Envs/env1/lib64/R/bin/R" CMD config --cppflags
"/home/epi/Envs/env1/lib64/R/bin/R" CMD config LAPACK_LIBS
"/home/epi/Envs/env1/lib64/R/bin/R" CMD config BLAS_LIBS
Configuration for R as a library:
include_dirs: ('/home/epi/Envs/env1/lib64/R/include',)
libraries: ('m', 'blas', 'lapack')
library_dirs: ('/home/epi/Envs/env1/lib64/R/lib',)
extra_link_args: ('-fopenmp', '-Wl,--export-dynamic')
# OSX-specific (included in extra_link_args)
framework_dirs: ()
frameworks: ()
warning: no previously-included files matching '*patch*' found anywhere in distribution
warning: no previously-included files matching '*diff*' found anywhere in distribution
warning: no previously-included files matching '.hg' found anywhere in distribution
warning: no files found matching 'MPL_LICENSE'
warning: no files found matching 'GPL_LICENSE'
warning: no files found matching 'LGPL_LICENSE'
no previously-included directories found matching 'dist'
warning: no files found matching 'doc/source/rpy2_logo.png'
Installing collected packages: rpy2
Running setup.py install for rpy2
"/home/epi/Envs/env1/lib64/R/bin/R" CMD config --ldflags
"/home/epi/Envs/env1/lib64/R/bin/R" CMD config --cppflags
"/home/epi/Envs/env1/lib64/R/bin/R" CMD config LAPACK_LIBS
"/home/epi/Envs/env1/lib64/R/bin/R" CMD config BLAS_LIBS
Configuration for R as a library:
include_dirs: ('/home/epi/Envs/env1/lib64/R/include',)
libraries: ('blas', 'lapack', 'm')
library_dirs: ('/home/epi/Envs/env1/lib64/R/lib',)
extra_link_args: ('-fopenmp', '-Wl,--export-dynamic')
# OSX-specific (included in extra_link_args)
framework_dirs: ()
frameworks: ()
building 'rpy2.rinterface._rinterface' extension
gcc -pthread -Werror=declaration-after-statement -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/home/epi/Envs/env1/include/python3.4m -I/home/epi/Envs/env1/lib64/R/include -c ./rpy/rinterface/_rinterface.c -o build/temp.linux-x86_64-3.4/./rpy/rinterface/_rinterface.o
In file included from /home/epi/Envs/env1/lib64/R/include/R.h:46,
from ./rpy/rinterface/_rinterface.h:8,
from ./rpy/rinterface/_rinterface.c:58:
/home/epi/Envs/env1/lib64/R/include/R_ext/Memory.h:40: warning: function declaration isn’t a prototype
In file included from ./rpy/rinterface/_rinterface.h:9,
from ./rpy/rinterface/_rinterface.c:58:
/home/epi/Envs/env1/lib64/R/include/Rinternals.h:816: warning: function declaration isn’t a prototype
In file included from ./rpy/rinterface/_rinterface.c:70:
/home/epi/Envs/env1/lib64/R/include/Rinterface.h:129: warning: function declaration isn’t a prototype
In file included from ./rpy/rinterface/_rinterface.c:79:
/home/epi/Envs/env1/lib64/R/include/R_ext/Rdynload.h:32: warning: function declaration isn’t a prototype
In file included from ./rpy/rinterface/_rinterface.c:122:
./rpy/rinterface/embeddedr.c: In function ‘Rpy_PreserveObject’:
./rpy/rinterface/embeddedr.c:90: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/embeddedr.c: In function ‘Rpy_ReleaseObject’:
./rpy/rinterface/embeddedr.c:160: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/embeddedr.c:177: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/embeddedr.c:189: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/embeddedr.c: In function ‘Rpy_ReplaceSexp’:
./rpy/rinterface/embeddedr.c:317: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/embeddedr.c:319: error: ISO C90 forbids mixed declarations and code
In file included from ./rpy/rinterface/_rinterface.c:124:
./rpy/rinterface/na_values.c: In function ‘NAComplex_tp_new’:
./rpy/rinterface/na_values.c:729: error: ISO C90 forbids mixed declarations and code
In file included from ./rpy/rinterface/_rinterface.c:125:
./rpy/rinterface/sexp.c: In function ‘Sexp_list_attr’:
./rpy/rinterface/sexp.c:110: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:112: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_do_slot’:
./rpy/rinterface/sexp.c:145: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:155: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:159: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_do_slot_assign’:
./rpy/rinterface/sexp.c:179: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:202: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:213: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_named_get’:
./rpy/rinterface/sexp.c:237: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_sexp_get’:
./rpy/rinterface/sexp.c:265: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_sexp_set’:
./rpy/rinterface/sexp.c:287: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:296: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:311: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_rclass_get’:
./rpy/rinterface/sexp.c:338: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:377: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:379: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_rclass_set’:
./rpy/rinterface/sexp.c:399: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_rid_get’:
./rpy/rinterface/sexp.c:416: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_refcount_get’:
./rpy/rinterface/sexp.c:435: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_rsame’:
./rpy/rinterface/sexp.c:454: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:460: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:466: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp___getstate__’:
./rpy/rinterface/sexp.c:503: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘EmbeddedR_unserialize’:
./rpy/rinterface/sexp.c:555: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:574: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:579: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_init’:
./rpy/rinterface/sexp.c:769: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:738: warning: unused variable ‘copy’
In file included from ./rpy/rinterface/_rinterface.c:126:
./rpy/rinterface/r_utils.c: In function ‘rpy_remove’:
./rpy/rinterface/r_utils.c:129: error: ISO C90 forbids mixed declarations and code
In file included from ./rpy/rinterface/_rinterface.c:127:
./rpy/rinterface/buffer.c: In function ‘VectorSexp_getbuffer’:
./rpy/rinterface/buffer.c:104: error: ISO C90 forbids mixed declarations and code
In file included from ./rpy/rinterface/_rinterface.c:128:
./rpy/rinterface/array.c: In function ‘array_struct_get’:
./rpy/rinterface/array.c:180: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/array.c:187: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/array.c:195: error: ISO C90 forbids mixed declarations and code
In file included from ./rpy/rinterface/_rinterface.c:129:
./rpy/rinterface/sequence.c: In function ‘VectorSexp_len’:
./rpy/rinterface/sequence.c:50: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_item’:
./rpy/rinterface/sequence.c:78: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_slice’:
./rpy/rinterface/sequence.c:241: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:288: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_item’:
./rpy/rinterface/sequence.c:389: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:411: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:417: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:440: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_slice’:
./rpy/rinterface/sequence.c:497: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:543: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_index’:
./rpy/rinterface/sequence.c:781: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_init’:
./rpy/rinterface/sequence.c:905: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:942: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_init_private’:
./rpy/rinterface/sequence.c:992: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1007: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToINTSXP’:
./rpy/rinterface/sequence.c:1172: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1182: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_IterToINTSXP’:
./rpy/rinterface/sequence.c:1248: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToREALSXP’:
./rpy/rinterface/sequence.c:1419: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1429: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_IterToREALSXP’:
./rpy/rinterface/sequence.c:1474: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToSTRSXP’:
./rpy/rinterface/sequence.c:1627: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1679: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1697: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1706: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToLGLSXP’:
./rpy/rinterface/sequence.c:1840: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1850: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToRAWSXP’:
./rpy/rinterface/sequence.c:2007: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:2017: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:2023: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToCPLXSXP’:
./rpy/rinterface/sequence.c:2156: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToVECSXP’:
./rpy/rinterface/sequence.c:2311: error: ISO C90 forbids mixed declarations and code
In file included from ./rpy/rinterface/_rinterface.c:130:
./rpy/rinterface/rexternalptr.c: In function ‘ExtPtrSexp_init’:
./rpy/rinterface/rexternalptr.c:75: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/rexternalptr.c:96: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/rexternalptr.c: In function ‘ExtPtrSexp_address’:
./rpy/rinterface/rexternalptr.c:142: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/rexternalptr.c: In function ‘ExtPtrSexp_tag’:
./rpy/rinterface/rexternalptr.c:163: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/rexternalptr.c: In function ‘ExtPtrSexp_protected’:
./rpy/rinterface/rexternalptr.c:181: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_WriteConsole’:
./rpy/rinterface/_rinterface.c:383: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ShowMessage’:
./rpy/rinterface/_rinterface.c:453: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ReadConsole’:
./rpy/rinterface/_rinterface.c:532: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:551: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:586: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_FlushConsole’:
./rpy/rinterface/_rinterface.c:638: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ChooseFile’:
./rpy/rinterface/_rinterface.c:702: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:724: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:743: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ShowFiles’:
./rpy/rinterface/_rinterface.c:799: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:808: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_CleanUp’:
./rpy/rinterface/_rinterface.c:941: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:955: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_setinitoptions’:
./rpy/rinterface/_rinterface.c:1045: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1054: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_init’:
./rpy/rinterface/_rinterface.c:1160: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1279: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1312: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1332: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1345: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_end’:
./rpy/rinterface/_rinterface.c:1377: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_setinteractive’:
./rpy/rinterface/_rinterface.c:1412: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_exception_from_errmessage’:
./rpy/rinterface/_rinterface.c:1444: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_parse’:
./rpy/rinterface/_rinterface.c:1469: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘Sexp_rcall’:
./rpy/rinterface/_rinterface.c:1584: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1608: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1633: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1771: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘SexpClosure_env_get’:
./rpy/rinterface/_rinterface.c:1891: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_findVar’:
./rpy/rinterface/_rinterface.c:2033: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_frame’:
./rpy/rinterface/_rinterface.c:2089: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_enclos’:
./rpy/rinterface/_rinterface.c:2119: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_keys’:
./rpy/rinterface/_rinterface.c:2138: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2145: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2147: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2153: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_subscript’:
./rpy/rinterface/_rinterface.c:2203: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2227: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_ass_subscript’:
./rpy/rinterface/_rinterface.c:2273: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2287: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2298: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2335: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2364: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2376: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_length’:
./rpy/rinterface/_rinterface.c:2405: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2411: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2413: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_iter’:
./rpy/rinterface/_rinterface.c:2434: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2441: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2443: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2447: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘SymbolSexp_init’:
./rpy/rinterface/_rinterface.c:2722: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2764: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘newSEXP’:
./rpy/rinterface/_rinterface.c:2959: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3030: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3082: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3110: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_sexpType’:
./rpy/rinterface/_rinterface.c:3238: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3249: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘do_Python’:
./rpy/rinterface/_rinterface.c:3337: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3345: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3382: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘PyInit__rinterface’:
./rpy/rinterface/_rinterface.c:3664: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3925: error: ISO C90 forbids mixed declarations and code
error: command 'gcc' failed with exit status 1
Complete output from command /home/epi/Envs/env1/bin/python3.4 -c "import setuptools, tokenize;__file__='/tmp/pip_build_epi/rpy2/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-eedn04mm-record/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.4
creating build/lib.linux-x86_64-3.4/rpy2
copying ./rpy/tests_rpy_classic.py -> build/lib.linux-x86_64-3.4/rpy2
copying ./rpy/rpy_classic.py -> build/lib.linux-x86_64-3.4/rpy2
copying ./rpy/tests.py -> build/lib.linux-x86_64-3.4/rpy2
copying ./rpy/__init__.py -> build/lib.linux-x86_64-3.4/rpy2
creating build/lib.linux-x86_64-3.4/rpy2/rlike
copying ./rpy/rlike/container.py -> build/lib.linux-x86_64-3.4/rpy2/rlike
copying ./rpy/rlike/functional.py -> build/lib.linux-x86_64-3.4/rpy2/rlike
copying ./rpy/rlike/indexing.py -> build/lib.linux-x86_64-3.4/rpy2/rlike
copying ./rpy/rlike/__init__.py -> build/lib.linux-x86_64-3.4/rpy2/rlike
creating build/lib.linux-x86_64-3.4/rpy2/rlike/tests
copying ./rpy/rlike/tests/test_container.py -> build/lib.linux-x86_64-3.4/rpy2/rlike/tests
copying ./rpy/rlike/tests/test_functional.py -> build/lib.linux-x86_64-3.4/rpy2/rlike/tests
copying ./rpy/rlike/tests/test_indexing.py -> build/lib.linux-x86_64-3.4/rpy2/rlike/tests
copying ./rpy/rlike/tests/__init__.py -> build/lib.linux-x86_64-3.4/rpy2/rlike/tests
creating build/lib.linux-x86_64-3.4/rpy2/rinterface
copying ./rpy/rinterface/__init__.py -> build/lib.linux-x86_64-3.4/rpy2/rinterface
creating build/lib.linux-x86_64-3.4/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpClosure.py -> build/lib.linux-x86_64-3.4/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpEnvironment.py -> build/lib.linux-x86_64-3.4/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_EmbeddedR.py -> build/lib.linux-x86_64-3.4/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_Device.py -> build/lib.linux-x86_64-3.4/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpExtPtr.py -> build/lib.linux-x86_64-3.4/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpVectorNumeric.py -> build/lib.linux-x86_64-3.4/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpVector.py -> build/lib.linux-x86_64-3.4/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_Sexp.py -> build/lib.linux-x86_64-3.4/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/__init__.py -> build/lib.linux-x86_64-3.4/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpSymbol.py -> build/lib.linux-x86_64-3.4/rpy2/rinterface/tests
creating build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/language.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/environments.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/pandas2ri.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/constants.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/methods.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/help.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/functions.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/robject.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/packages.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/vectors.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/conversion.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/packages_utils.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/numpy2ri.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
copying ./rpy/robjects/__init__.py -> build/lib.linux-x86_64-3.4/rpy2/robjects
creating build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testRObject.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testVector.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testNumpyConversions.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testHelp.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testPandasConversions.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testFormula.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testLanguage.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testArray.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testFunction.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testDataFrame.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testMethods.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testEnvironment.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testPackages.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/__init__.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
copying ./rpy/robjects/tests/testRobjects.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/tests
creating build/lib.linux-x86_64-3.4/rpy2/robjects/lib
copying ./rpy/robjects/lib/ggplot2.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/lib
copying ./rpy/robjects/lib/__init__.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/lib
copying ./rpy/robjects/lib/grid.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/lib
creating build/lib.linux-x86_64-3.4/rpy2/robjects/lib/tests
copying ./rpy/robjects/lib/tests/test_ggplot2.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/lib/tests
copying ./rpy/robjects/lib/tests/__init__.py -> build/lib.linux-x86_64-3.4/rpy2/robjects/lib/tests
creating build/lib.linux-x86_64-3.4/rpy2/interactive
copying ./rpy/interactive/process_revents.py -> build/lib.linux-x86_64-3.4/rpy2/interactive
copying ./rpy/interactive/packages.py -> build/lib.linux-x86_64-3.4/rpy2/interactive
copying ./rpy/interactive/__init__.py -> build/lib.linux-x86_64-3.4/rpy2/interactive
creating build/lib.linux-x86_64-3.4/rpy2/interactive/tests
copying ./rpy/interactive/tests/__init__.py -> build/lib.linux-x86_64-3.4/rpy2/interactive/tests
creating build/lib.linux-x86_64-3.4/rpy2/ipython
copying ./rpy/ipython/rmagic.py -> build/lib.linux-x86_64-3.4/rpy2/ipython
copying ./rpy/ipython/ggplot.py -> build/lib.linux-x86_64-3.4/rpy2/ipython
copying ./rpy/ipython/__init__.py -> build/lib.linux-x86_64-3.4/rpy2/ipython
creating build/lib.linux-x86_64-3.4/rpy2/ipython/tests
copying ./rpy/ipython/tests/test_rmagic.py -> build/lib.linux-x86_64-3.4/rpy2/ipython/tests
copying ./rpy/ipython/tests/__init__.py -> build/lib.linux-x86_64-3.4/rpy2/ipython/tests
running build_ext
"/home/epi/Envs/env1/lib64/R/bin/R" CMD config --ldflags
"/home/epi/Envs/env1/lib64/R/bin/R" CMD config --cppflags
"/home/epi/Envs/env1/lib64/R/bin/R" CMD config LAPACK_LIBS
"/home/epi/Envs/env1/lib64/R/bin/R" CMD config BLAS_LIBS
Configuration for R as a library:
include_dirs: ('/home/epi/Envs/env1/lib64/R/include',)
libraries: ('blas', 'lapack', 'm')
library_dirs: ('/home/epi/Envs/env1/lib64/R/lib',)
extra_link_args: ('-fopenmp', '-Wl,--export-dynamic')
# OSX-specific (included in extra_link_args)
framework_dirs: ()
frameworks: ()
building 'rpy2.rinterface._rinterface' extension
creating build/temp.linux-x86_64-3.4
creating build/temp.linux-x86_64-3.4/rpy
creating build/temp.linux-x86_64-3.4/rpy/rinterface
gcc -pthread -Werror=declaration-after-statement -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/home/epi/Envs/env1/include/python3.4m -I/home/epi/Envs/env1/lib64/R/include -c ./rpy/rinterface/_rinterface.c -o build/temp.linux-x86_64-3.4/./rpy/rinterface/_rinterface.o
In file included from /home/epi/Envs/env1/lib64/R/include/R.h:46,
from ./rpy/rinterface/_rinterface.h:8,
from ./rpy/rinterface/_rinterface.c:58:
/home/epi/Envs/env1/lib64/R/include/R_ext/Memory.h:40: warning: function declaration isn’t a prototype
In file included from ./rpy/rinterface/_rinterface.h:9,
from ./rpy/rinterface/_rinterface.c:58:
/home/epi/Envs/env1/lib64/R/include/Rinternals.h:816: warning: function declaration isn’t a prototype
In file included from ./rpy/rinterface/_rinterface.c:70:
/home/epi/Envs/env1/lib64/R/include/Rinterface.h:129: warning: function declaration isn’t a prototype
In file included from ./rpy/rinterface/_rinterface.c:79:
/home/epi/Envs/env1/lib64/R/include/R_ext/Rdynload.h:32: warning: function declaration isn’t a prototype
In file included from ./rpy/rinterface/_rinterface.c:122:
./rpy/rinterface/embeddedr.c: In function ‘Rpy_PreserveObject’:
./rpy/rinterface/embeddedr.c:90: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/embeddedr.c: In function ‘Rpy_ReleaseObject’:
./rpy/rinterface/embeddedr.c:160: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/embeddedr.c:177: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/embeddedr.c:189: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/embeddedr.c: In function ‘Rpy_ReplaceSexp’:
./rpy/rinterface/embeddedr.c:317: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/embeddedr.c:319: error: ISO C90 forbids mixed declarations and code
In file included from ./rpy/rinterface/_rinterface.c:124:
./rpy/rinterface/na_values.c: In function ‘NAComplex_tp_new’:
./rpy/rinterface/na_values.c:729: error: ISO C90 forbids mixed declarations and code
In file included from ./rpy/rinterface/_rinterface.c:125:
./rpy/rinterface/sexp.c: In function ‘Sexp_list_attr’:
./rpy/rinterface/sexp.c:110: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:112: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_do_slot’:
./rpy/rinterface/sexp.c:145: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:155: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:159: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_do_slot_assign’:
./rpy/rinterface/sexp.c:179: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:202: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:213: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_named_get’:
./rpy/rinterface/sexp.c:237: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_sexp_get’:
./rpy/rinterface/sexp.c:265: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_sexp_set’:
./rpy/rinterface/sexp.c:287: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:296: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:311: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_rclass_get’:
./rpy/rinterface/sexp.c:338: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:377: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:379: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_rclass_set’:
./rpy/rinterface/sexp.c:399: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_rid_get’:
./rpy/rinterface/sexp.c:416: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_refcount_get’:
./rpy/rinterface/sexp.c:435: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_rsame’:
./rpy/rinterface/sexp.c:454: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:460: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:466: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp___getstate__’:
./rpy/rinterface/sexp.c:503: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘EmbeddedR_unserialize’:
./rpy/rinterface/sexp.c:555: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:574: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:579: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c: In function ‘Sexp_init’:
./rpy/rinterface/sexp.c:769: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sexp.c:738: warning: unused variable ‘copy’
In file included from ./rpy/rinterface/_rinterface.c:126:
./rpy/rinterface/r_utils.c: In function ‘rpy_remove’:
./rpy/rinterface/r_utils.c:129: error: ISO C90 forbids mixed declarations and code
In file included from ./rpy/rinterface/_rinterface.c:127:
./rpy/rinterface/buffer.c: In function ‘VectorSexp_getbuffer’:
./rpy/rinterface/buffer.c:104: error: ISO C90 forbids mixed declarations and code
In file included from ./rpy/rinterface/_rinterface.c:128:
./rpy/rinterface/array.c: In function ‘array_struct_get’:
./rpy/rinterface/array.c:180: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/array.c:187: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/array.c:195: error: ISO C90 forbids mixed declarations and code
In file included from ./rpy/rinterface/_rinterface.c:129:
./rpy/rinterface/sequence.c: In function ‘VectorSexp_len’:
./rpy/rinterface/sequence.c:50: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_item’:
./rpy/rinterface/sequence.c:78: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_slice’:
./rpy/rinterface/sequence.c:241: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:288: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_item’:
./rpy/rinterface/sequence.c:389: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:411: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:417: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:440: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_slice’:
./rpy/rinterface/sequence.c:497: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:543: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_index’:
./rpy/rinterface/sequence.c:781: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_init’:
./rpy/rinterface/sequence.c:905: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:942: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘VectorSexp_init_private’:
./rpy/rinterface/sequence.c:992: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1007: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToINTSXP’:
./rpy/rinterface/sequence.c:1172: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1182: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_IterToINTSXP’:
./rpy/rinterface/sequence.c:1248: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToREALSXP’:
./rpy/rinterface/sequence.c:1419: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1429: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_IterToREALSXP’:
./rpy/rinterface/sequence.c:1474: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToSTRSXP’:
./rpy/rinterface/sequence.c:1627: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1679: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1697: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1706: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToLGLSXP’:
./rpy/rinterface/sequence.c:1840: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:1850: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToRAWSXP’:
./rpy/rinterface/sequence.c:2007: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:2017: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c:2023: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToCPLXSXP’:
./rpy/rinterface/sequence.c:2156: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/sequence.c: In function ‘RPy_SeqToVECSXP’:
./rpy/rinterface/sequence.c:2311: error: ISO C90 forbids mixed declarations and code
In file included from ./rpy/rinterface/_rinterface.c:130:
./rpy/rinterface/rexternalptr.c: In function ‘ExtPtrSexp_init’:
./rpy/rinterface/rexternalptr.c:75: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/rexternalptr.c:96: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/rexternalptr.c: In function ‘ExtPtrSexp_address’:
./rpy/rinterface/rexternalptr.c:142: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/rexternalptr.c: In function ‘ExtPtrSexp_tag’:
./rpy/rinterface/rexternalptr.c:163: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/rexternalptr.c: In function ‘ExtPtrSexp_protected’:
./rpy/rinterface/rexternalptr.c:181: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_WriteConsole’:
./rpy/rinterface/_rinterface.c:383: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ShowMessage’:
./rpy/rinterface/_rinterface.c:453: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ReadConsole’:
./rpy/rinterface/_rinterface.c:532: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:551: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:586: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_FlushConsole’:
./rpy/rinterface/_rinterface.c:638: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ChooseFile’:
./rpy/rinterface/_rinterface.c:702: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:724: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:743: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ShowFiles’:
./rpy/rinterface/_rinterface.c:799: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:808: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_CleanUp’:
./rpy/rinterface/_rinterface.c:941: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:955: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_setinitoptions’:
./rpy/rinterface/_rinterface.c:1045: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1054: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_init’:
./rpy/rinterface/_rinterface.c:1160: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1279: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1312: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1332: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1345: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_end’:
./rpy/rinterface/_rinterface.c:1377: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_setinteractive’:
./rpy/rinterface/_rinterface.c:1412: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_exception_from_errmessage’:
./rpy/rinterface/_rinterface.c:1444: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_parse’:
./rpy/rinterface/_rinterface.c:1469: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘Sexp_rcall’:
./rpy/rinterface/_rinterface.c:1584: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1608: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1633: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:1771: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘SexpClosure_env_get’:
./rpy/rinterface/_rinterface.c:1891: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_findVar’:
./rpy/rinterface/_rinterface.c:2033: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_frame’:
./rpy/rinterface/_rinterface.c:2089: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_enclos’:
./rpy/rinterface/_rinterface.c:2119: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_keys’:
./rpy/rinterface/_rinterface.c:2138: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2145: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2147: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2153: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_subscript’:
./rpy/rinterface/_rinterface.c:2203: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2227: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_ass_subscript’:
./rpy/rinterface/_rinterface.c:2273: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2287: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2298: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2335: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2364: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2376: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_length’:
./rpy/rinterface/_rinterface.c:2405: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2411: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2413: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EnvironmentSexp_iter’:
./rpy/rinterface/_rinterface.c:2434: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2441: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2443: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2447: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘SymbolSexp_init’:
./rpy/rinterface/_rinterface.c:2722: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:2764: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘newSEXP’:
./rpy/rinterface/_rinterface.c:2959: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3030: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3082: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3110: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_sexpType’:
./rpy/rinterface/_rinterface.c:3238: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3249: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘do_Python’:
./rpy/rinterface/_rinterface.c:3337: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3345: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3382: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c: In function ‘PyInit__rinterface’:
./rpy/rinterface/_rinterface.c:3664: error: ISO C90 forbids mixed declarations and code
./rpy/rinterface/_rinterface.c:3925: error: ISO C90 forbids mixed declarations and code
error: command 'gcc' failed with exit status 1
----------------------------------------
Cleaning up...
Command /home/epi/Envs/env1/bin/python3.4 -c "import setuptools, tokenize;__file__='/tmp/pip_build_epi/rpy2/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-eedn04mm-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip_build_epi/rpy2
Storing debug log for failure in /home/epi/.pip/pip.log
[epi@localhost rpy2]$
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