I hereby claim:
- I am armish on github.
- I am armish (https://keybase.io/armish) on keybase.
- I have a public key whose fingerprint is 7805 DC84 094C 8944 FDB5 DFB0 7446 EBFB 2C7C 7828
To claim this, I am signing this object:
I hereby claim:
To claim this, I am signing this object:
#!/bin/bash | |
for i in `git ls-files` | |
do | |
git log --follow -p $i |grep "^commit" |awk "{ print \"$i\tmodified-in\t\" \$2 }" | |
done |
// require() some stuff from npm (like you were using browserify) | |
// and then hit Run Code to run it on the right | |
// this doesn't work, because browserify fails due to missing | |
// transformify dependency | |
var pileup = require("pileup"); |
var pileup = require("pileup"); | |
var sources = [ | |
{ | |
viz: pileup.viz.genome(), | |
isReference: true, | |
data: pileup.formats.twoBit({ | |
url: 'http://www.biodalliance.org/datasets/hg19.2bit' | |
}), | |
name: 'Reference' |
/** | |
* Visualization of genes, including exons and coding regions. | |
* @flow | |
*/ | |
'use strict'; | |
var React = require('./react-shim'), | |
_ = require('underscore'), | |
d3 = require('d3'), | |
shallowEquals = require('shallow-equals'), |
CANCER_IMMUNITY_DIFFERENTIATION_ANTIGENS http://cancerimmunity.org/peptide/differentiation/ CEACAM5 SILV SCGB2A2 MLANA ANKRD30A GPR143 ACPP KLK3 RAB38 TYRP1 DCT TYR | |
CANCER_IMMUNITY_SHARED_TUMOR_SPECIFIC_ANTIGENS http://cancerimmunity.org/peptide/tumor-specific/ BAGE CCNA1 GAGE1 GAGE2A GAGE8 GAGE3 GAGE4 GAGE5 GAGE6 GAGE7 MGAT5 CXorf61 CCDC110 CTAG2 MAGEA1 MAGEA2 MAGEA3 MAGEA4 MAGEA6 MAGEA9 MAGEA10 MAGEA12 MAGEC1 MAGEC2 MUC1 CTAG1B SAGE1 SPA17 SSX2 SSX4 CSAG2 DCT XAGE1B | |
CANCER_IMMUNITY_ANTIGENS_OVEREXPRESSED_IN_TUMORS http://cancerimmunity.org/peptide/overexpressed/ PLIN2 LOC51152 ALDH1A1 BCL2L1 WDR46 CALCA PTPRC CD274 CPSF1 CCND1 DKK1 ENAH EPCAM EPHA3 EZH2 FGF5 GPC3 CA9 ERBB2 HLA-DOB HPN IDO1 GPC3 IL13RA2 CES2 AFP KLK4 KIF20A CSF1 CSF1 CSPG4 MDM2 MDK MMP2 MMP7 MUC1 MUC5AC TP53 PAX5 ZNF395 PRAME FOLH1 RAGE RGS5 RhoC RNF43 DCDC2 SCRN1 SOX10 STEAP1 BIRC5 TERT TPBG VEGFA WT1 |
#!/bin/bash | |
set -e | |
cat helpers/triplets.lst |while read patient | |
do | |
mergedFile=ssms/merged/${patient}.txt | |
cat helpers/ssm_header.txt > ${mergedFile} | |
count=0 |
sampleWheelData <- list( | |
list( | |
name="R", | |
children=list( | |
list( | |
name="R_1", | |
children=list( | |
list(name="R_1_1", colour="#160000"), | |
list(name="R_1_2", colour="#220000"), | |
list(name="R_1_3", colour="#280000") |