armish

# This function sorts the matrix for better visualization of mutual exclusivity across genes
memoSort <- function(M) {
	geneOrder <- sort(rowSums(M), decreasing=TRUE, index.return=TRUE)$ix;
	scoreCol <- function(x) {
		score <- 0;
		for(i in 1:length(x)) {
			if(x[i]) {
				score <- score + 2^(length(x)-i);
			}
		}

armish

armish

armish

armish

#use "topfind";;
#thread

#use "biokepi_machine.ml";;

open Biokepi
open KEDSL
open Cmdliner

(* simple aliases *)

armish

Keybase proof

I hereby claim:

• I am armish on github.
• I am armish (https://keybase.io/armish) on keybase.
• I have a public key ASCZY1H-Zg-Yt8dFqLLOAdRtNJPEvhilMDnwYwWAfaZTpQo

To claim this, I am signing this object:

armish

# This Docker image is meant to serve commonly used Ensembl Genomes
#  already cached via PyEnsembl. Any application that depends on
#  the pyensembl library can use this image to speed things up
#  as caching these genomes is a huge bottleneck for most applications

FROM ubuntu:latest
MAINTAINER B. Arman Aksoy <arman@aksoy.org>

## We will be needing a few utilities to get this going

armish

#!/bin/bash

# Usage:
#  $ bash fastqc_to_email.sh REPORT_HEADER /path/to/file1.html /path/to/file2.html ...
#
# requires the unzipped folder containing the summaries to be present in the same folder
# with the HTML report!

JOB_NAME=$1
echo "# FASTQC ran for $JOB_NAME"

armish

armish