Skip to content

Instantly share code, notes, and snippets.

@arraytools
Created May 21, 2015 20:37
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save arraytools/2310f759e0d4d43501f1 to your computer and use it in GitHub Desktop.
Save arraytools/2310f759e0d4d43501f1 to your computer and use it in GitHub Desktop.
Content obtained from the command "tar -tzvf Homo_sapiens_UCSC_hg19.tar.gz"
10228584083 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Variation/snp137.txt
12318134451 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Variation/snp138.txt
0 Homo_sapiens/UCSC/hg19/
0 Homo_sapiens/UCSC/hg19/Annotation/
0 Homo_sapiens/UCSC/hg19/Annotation/Genes -> Archives/archive-current/Genes
0 Homo_sapiens/UCSC/hg19/Annotation/README.txt -> Archives/archive-current/README.txt
0 Homo_sapiens/UCSC/hg19/Annotation/SmallRNA -> Archives/archive-current/SmallRNA
0 Homo_sapiens/UCSC/hg19/Annotation/Variation -> Archives/archive-current/Variation
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Genes/
113323597 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Genes/genes.gtf
376 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Genes/ChromInfo.txt
26731095 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Genes/refSeqSummary.txt
30754 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Genes/cytoBand.txt
3781397 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Genes/refFlat.txt.gz
19402651 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Genes/knownGene.txt
1533414 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Genes/knownToRefSeq.txt
11409964 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Genes/refGene.txt
8361189 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Genes/kgXref.txt
146 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/README.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/SmallRNA/
202050 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/SmallRNA/precursor.fa
126446 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/SmallRNA/mature.fa
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Variation/
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Variation/snp131.txt -> ../../archive-2012-03-09-03-24-41/Variation/snp131.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-08-30-21-45-18/Variation/snp132.txt -> ../../archive-2012-03-09-03-24-41/Variation/snp132.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Genes/
68427904 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Genes/genes.gtf
111483810 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Genes/refMrna.fa
376 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Genes/ChromInfo.txt
24817571 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Genes/refSeqSummary.txt
30754 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Genes/cytoBand.txt
3821582 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Genes/refFlat.txt.gz
19402651 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Genes/knownGene.txt
1533414 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Genes/knownToRefSeq.txt
10836334 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Genes/refGene.txt
8361189 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Genes/kgXref.txt
173 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/README.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/SmallRNA/
88062 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/SmallRNA/mature.fa
151546 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/SmallRNA/hairpin.fa
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Variation/
2047365487 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Variation/snp130.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Variation/snp131.txt -> ../../archive-2011-08-30-21-45-18/Variation/snp131.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2011-01-27-18-25-49/Variation/snp132.txt -> ../../archive-2011-08-30-21-45-18/Variation/snp132.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Genes/
122479548 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Genes/genes.gtf
376 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Genes/ChromInfo.txt
32417915 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Genes/refSeqSummary.txt
30754 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Genes/cytoBand.txt
4230523 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Genes/refFlat.txt.gz
19567194 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Genes/knownGene.txt
1555641 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Genes/knownToRefSeq.txt
12491136 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Genes/refGene.txt
10989151 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Genes/kgXref.txt
144 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/README.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/SmallRNA/
226688 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/SmallRNA/precursor.fa
152351 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/SmallRNA/mature.fa
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Variation/
3037777883 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Variation/snp131.txt
9177079807 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Variation/snp135.txt
10231744464 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Variation/snp137.txt
12177896828 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Variation/snp138.txt
6565011531 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2013-03-06-11-23-03/Variation/snp132.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Genes/
116963244 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Genes/genes.gtf
376 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Genes/ChromInfo.txt
27213903 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Genes/refSeqSummary.txt
30754 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Genes/cytoBand.txt
3955436 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Genes/refFlat.txt.gz
19567194 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Genes/knownGene.txt
1555641 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Genes/knownToRefSeq.txt
11806192 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Genes/refGene.txt
10989151 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Genes/kgXref.txt
144 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/README.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/SmallRNA/
216281 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/SmallRNA/precursor.fa
142874 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/SmallRNA/mature.fa
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Variation/
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Variation/snp131.txt -> ../../archive-2013-03-06-11-23-03/Variation/snp131.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Variation/snp135.txt -> ../../archive-2013-03-06-11-23-03/Variation/snp135.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2012-03-09-03-24-41/Variation/snp132.txt -> ../../archive-2013-03-06-11-23-03/Variation/snp132.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Genes/
135909791 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Genes/genes.gtf
38872459 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Genes/refSeqSummary.txt
30754 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Genes/cytoBand.txt
4757360 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Genes/refFlat.txt.gz
19960841 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Genes/knownGene.txt
1607277 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Genes/knownToRefSeq.txt
14099330 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Genes/refGene.txt
11412673 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Genes/kgXref.txt
156 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/README.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/SmallRNA/
194143 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/SmallRNA/mature.fa
262178 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/SmallRNA/hairpin.fa
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Variation/
10228584083 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Variation/snp137.txt
12318134451 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2014-06-02-13-47-56/Variation/snp138.txt
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-current -> archive-2014-06-02-13-47-56
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/splice_sites_49/
4919888 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/splice_sites_49/splice_sites-49.fa.2bpb
7048517 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/splice_sites_49/exon_coords.txt
1623123 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/splice_sites_49/splice_sites-49.fa.vld
8685259 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/splice_sites_49/splice_sites-49.fa.idx
26856262 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/splice_sites_49/splice_sites-49.fa
66668085 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/genes.gtf
108108270 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/refMrna.fa
73 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/DATE.txt
376 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/ChromInfo.txt
23984144 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/refSeqSummary.txt
30754 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/cytoBand.txt
3688299 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/refFlat.txt.gz
0 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/splice_sites_34/
20911440 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/splice_sites_34/splice_sites-34.fa
1621907 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/splice_sites_34/splice_sites-34.fa.vld
7048517 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/splice_sites_34/exon_coords.txt
8629251 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/splice_sites_34/splice_sites-34.fa.idx
3435028 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/splice_sites_34/splice_sites-34.fa.2bpb
9137744 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/refFlat.txt
19402651 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/knownGene.txt
1533414 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/knownToRefSeq.txt
10540592 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/refGene.txt
8361189 Homo_sapiens/UCSC/hg19/Annotation/Archives/archive-2010-09-27-22-25-17/kgXref.txt
0 Homo_sapiens/UCSC/hg19/Sequence/
0 Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index/
3284 Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index/genome.3.bt2
957980027 Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index/genome.1.bt2
715335932 Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index/genome.rev.2.bt2
957980027 Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index/genome.rev.1.bt2
715335926 Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index/genome.4.bt2
715335932 Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index/genome.2.bt2
0 Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index/genome.fa -> ../WholeGenomeFasta/genome.fa
0 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/
0 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/genome.fa.amb -> version0.6.0/genome.fa.amb
0 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/genome.fa.sa -> version0.6.0/genome.fa.sa
0 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.5.x/
6663 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.5.x/genome.fa.amb
386961772 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.5.x/genome.fa.sa
1160885292 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.5.x/genome.fa.bwt
939 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.5.x/genome.fa.ann
1160885292 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.5.x/genome.fa.rbwt
773923497 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.5.x/genome.fa.pac
773923497 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.5.x/genome.fa.rpac
0 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.5.x/genome.fa -> ../../WholeGenomeFasta/genome.fa
386961772 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.5.x/genome.fa.rsa
0 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.6.0/
6663 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.6.0/genome.fa.amb
1547847040 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.6.0/genome.fa.sa
3095694072 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.6.0/genome.fa.bwt
939 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.6.0/genome.fa.ann
773923497 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.6.0/genome.fa.pac
0 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/version0.6.0/genome.fa -> ../../WholeGenomeFasta/genome.fa
0 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/genome.fa.bwt -> version0.6.0/genome.fa.bwt
0 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/genome.fa.ann -> version0.6.0/genome.fa.ann
0 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/genome.fa.pac -> version0.6.0/genome.fa.pac
0 Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/genome.fa -> version0.6.0/genome.fa
0 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/
60561044 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chrY.fa
49092500 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr21.fa
184533572 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr5.fa
201982885 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr3.fa
248063367 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr2.fa
174537375 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr6.fa
92161856 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr16.fa
64286038 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr20.fa
104582027 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr15.fa
136528940 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr12.fa
16909 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chrM.fa
254235640 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr1.fa
194977368 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr4.fa
144037706 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr9.fa
79638800 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr18.fa
138245449 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr10.fa
52330665 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr22.fa
109496538 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr14.fa
158375978 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chrX.fa
137706654 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr11.fa
117473283 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr13.fa
60311570 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr19.fa
149291309 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr8.fa
82819122 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr17.fa
162321443 Homo_sapiens/UCSC/hg19/Sequence/Chromosomes/chr7.fa
0 Homo_sapiens/UCSC/hg19/Sequence/BlastDB/
1088 Homo_sapiens/UCSC/hg19/Sequence/BlastDB/genome.fa.nhr
774383504 Homo_sapiens/UCSC/hg19/Sequence/BlastDB/genome.fa.nsq
0 Homo_sapiens/UCSC/hg19/Sequence/BlastDB/genome.fa -> ../WholeGenomeFasta/genome.fa
506 Homo_sapiens/UCSC/hg19/Sequence/BlastDB/genome.fa.nsd
59 Homo_sapiens/UCSC/hg19/Sequence/BlastDB/genome.fa.nsi
376 Homo_sapiens/UCSC/hg19/Sequence/BlastDB/genome.fa.nin
132 Homo_sapiens/UCSC/hg19/Sequence/BlastDB/genome.fa.nog
0 Homo_sapiens/UCSC/hg19/Sequence/BowtieIndex/
357667968 Homo_sapiens/UCSC/hg19/Sequence/BowtieIndex/genome.2.ebwt
357667968 Homo_sapiens/UCSC/hg19/Sequence/BowtieIndex/genome.rev.2.ebwt
821725563 Homo_sapiens/UCSC/hg19/Sequence/BowtieIndex/genome.1.ebwt
3284 Homo_sapiens/UCSC/hg19/Sequence/BowtieIndex/genome.3.ebwt
821725563 Homo_sapiens/UCSC/hg19/Sequence/BowtieIndex/genome.rev.1.ebwt
0 Homo_sapiens/UCSC/hg19/Sequence/BowtieIndex/genome.fa -> ../WholeGenomeFasta/genome.fa
715335926 Homo_sapiens/UCSC/hg19/Sequence/BowtieIndex/genome.4.ebwt
0 Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/
3548 Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/GenomeSize.xml
3899 Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/genome.dict
783 Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/genome.fa.fai
3157608038 Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/genome.fa
0 Homo_sapiens/UCSC/hg19/Sequence/AbundantSequences/
108 Homo_sapiens/UCSC/hg19/Sequence/AbundantSequences/polyA.fa
2301 Homo_sapiens/UCSC/hg19/Sequence/AbundantSequences/hum5SrDNA.fa
0 Homo_sapiens/UCSC/hg19/Sequence/AbundantSequences/chrM.fa -> ../Chromosomes/chrM.fa
107 Homo_sapiens/UCSC/hg19/Sequence/AbundantSequences/polyC.fa
43691 Homo_sapiens/UCSC/hg19/Sequence/AbundantSequences/humRibosomal.fa
119 Homo_sapiens/UCSC/hg19/Sequence/AbundantSequences/adapter_contam1.fa
5538 Homo_sapiens/UCSC/hg19/Sequence/AbundantSequences/phix.fa
5918 README.txt
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment