arupgsh

# PHP function to display protein sequence in Uniprot like format
# Author Arup Ghosh
# Use $len = 60

function processSeq($str,$len){
    $arr = str_split($str,$len);
    $i=1;
    // The code will be improved in future revisions
    foreach($arr as $bit){
        $k10=str_split($bit,10);

arupgsh

Contents of : ftp://ussd-ftp.illumina.com/README.txt



Illumina iGenomes

The iGenomes are a collection of sequence and annotation files for commonly 
analyzed genomes. Each iGenome contains data for one species, downloaded from 
one source (UCSC, NCBI, or Ensembl), for one genomic build. 

arupgsh

from Bio import Entrez
Entrez.email = "yourmail@gmail.com"
handle = Entrez.esearch(db="pubmed", term="cancer", retmax="10", sort="relevance", retmode="xml")
records = Entrez.read(handle)
print records["IdList"]

arupgsh

#!/usr/bin/env python
# numpy and biopython are required -- pip install numpy biopython

from Bio import Entrez
from Bio import Medline

MAX_COUNT = 10
TERM = 'Tuberculosis'

print('Getting {0} publications containing {1}...'.format(MAX_COUNT, TERM))

arupgsh

#Author: Arup Ghosh
#Description: https://gist.github.com/arupgsh/e50f4cd05547f0334412
#2016
server {
    listen 80 default_server;
    listen [::]:80 default_server ipv6only=on;
    server_name example.com www.example.com;

    root   /var/www/example.com/public_html/;
    index  index.php;

arupgsh

/** WPT related post widget */
function wpt_related_posts_cat() {
if ( is_single ( ) ) {
global $post;
$count = 1;
$postIDs = array( $post->ID );
$related = '';
$cats = wp_get_post_categories($post->ID );
$catIDs = array( );{
foreach ( $cats as $cat ) {

arupgsh

print "Enter PDB File Name:";
$pdbn=<STDIN>;
print "Enter Output  PDB File Name:";
$pdbo=<STDIN>;
print "Enter Chain Para 1:";
$pdbc1=<STDIN>;
print "Enter Chain Para 2:";
$pdbc2=<STDIN>;
print "Enter RES Para 1:";
$pdbr1=<STDIN>;

arupgsh

/** Customize the post footer function by wptron */
add_filter('genesis_post_meta', 'wpt_info_filter');
function wpt_info_filter($entry_footer) {
if (!is_page()) {
$entry_footer = '[post_categories]';
}
return $entry_footer;
}

arupgsh

/** Customize the post header function by wptron */
add_filter('genesis_post_info', 'wpt_info_filter');
function wpt_info_filter($post_info) {
if (!is_page()) {
$post_info = 'Written by [post_author_posts_link] [post_comments] [post_edit]';
}
return $post_info;
}