ashander

data(PlantGrowth)
pg<-subset(PlantGrowth,group!='ctrl')
pg$group=factor(pg$group)

pg1=  pg[pg$group=='trt1',]
pg2=  pg[pg$group=='trt2',]

hist(pg$weight)
lines(density(pg1$weight), col='blue')
lines(density(pg2$weight), col='red')

ashander

latex input:            mmd-tufte-handout-header  
Title:                  Tufte latex from Rmd example
Base Header Level:      2
latex mode:             memoir  
author:                 Jaime Ashander
copyright:              2011 Jaime Ashander
                        This work is licensed under a Creative Commons License.  
                        http://creativecommons.org/licenses/by-nc-sa/3.0/  
latex input:            mmd-natbib-plain
latex input:            mmd-tufte-handout-begin-doc  

ashander

checking build system type... i386-apple-darwin10.8.0
checking host system type... i386-apple-darwin10.8.0
checking for gcc... gcc-4.2
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 accepts -g... yes

ashander

Fisheries landings example

First you'll need to install a few packages if you don't already have them

install.packages(c("plyr", "ggplot2", "rfisheries"))

# Next load up the package
library(rfisheries)

ashander

# get data from html tables in ESA archive 
# http://www.esapubs.org/archive/mono/M081/023/suppl-1.htm
library(XML)
root <- 'http://www.esapubs.org/archive/mono/M081/023'
tips <- c('limn.html', 'latitudes.html', 'fish.html', 'acronyms.html')

dat <- lapply(tips, function(t)
              readHTMLTable(paste(root, t, sep='/')))
    

ashander

## @knitr my-external-chunk
set.seed(111)
rnorm(100)

ashander

## urls were updated for gdam2 -- should go to gadm.org to update for each run of this
## http://gadm.org/country
## choose a country and R spdf from dropdown

## eg for 
##for AFG sends POST req http://gadm.org/download?OK=OK&_submit_check=1&cnt=AFG_Afghanistan&thm=R%23R%20data
##returns page with list of download links (likely based on your location and data availability)
## part of the page looks like
## 
## download

ashander

ashander

# placeholder

ashander

• kill iterm2 from Activity Monitor
• open a terminal
• login to tmux and back up using tmux resurrect or similar

pkill iTerm
ps |grep tmux
kill -9 # for each [pid] correesponding to a `tmux -CC` process, 
 # you could use pkill instead if you got the pattern right?