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/# hdf5 - 2016-11-28_01-06-41.txt

Created November 28, 2016 06:07
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hdf5 (homebrew/science/hdf5) on macOS 10.11.6 - Homebrew build logs
Raw
# hdf5 - 2016-11-28_01-06-41.txt
Homebrew build logs for homebrew/science/hdf5 on macOS 10.11.6
Build date: 2016-11-28 01:06:41
Raw
00.config.out
HOMEBREW_VERSION: 1.1.1-95-g84b3c57
ORIGIN: https://github.com/Homebrew/brew.git
HEAD: 84b3c57086d201ea07070a1b4d1b0520e2d7134a
Last commit: 22 hours ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: 158decbf79ffbd01893cb78ee6756680a977a9fc
Core tap last commit: 3 hours ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_REPOSITORY: /usr/local/Homebrew
HOMEBREW_CELLAR: /usr/local/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://homebrew.bintray.com
CPU: quad-core 64-bit haswell
Homebrew Ruby: 2.0.0-p648
Clang: 7.3 build 703
Git: 2.9.0 => /usr/local/bin/git
Perl: /usr/bin/perl
Python: /usr/local/bin/python => /usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/bin/python2.7
Ruby: /usr/bin/ruby => /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby
Java: 1.8.0_51, 1.6.0_65-b14-468
macOS: 10.11.6-x86_64
Xcode: 8.1
CLT: 7.3.1.0.1.1461711523
X11: 2.7.9 => /opt/X11
Raw
00.doctor.out
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry and just ignore them. Thanks!
Warning: Some installed formula are missing dependencies.
You should `brew install` the missing dependencies:
brew install hdf5 libmagic libtermkey libuv libvterm unibilium webp
Run `brew missing` for more details.
Raw
00.options.out
homebrew/science/hdf5 --with-mpi
Raw
00.tap.out
Formula: hdf5
Tap: homebrew/science
Path: /usr/local/Homebrew/Library/Taps/homebrew/homebrew-science/hdf5.rb
Raw
01.autoreconf
2016-11-28 01:06:24 -0500
autoreconf
-fiv
autoreconf: Entering directory `.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --force
autoreconf: configure.ac: tracing
autoreconf: running: glibtoolize --copy --force
glibtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'bin'.
glibtoolize: copying file 'bin/ltmain.sh'
glibtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
glibtoolize: copying file 'm4/libtool.m4'
glibtoolize: copying file 'm4/ltoptions.m4'
glibtoolize: copying file 'm4/ltsugar.m4'
glibtoolize: copying file 'm4/ltversion.m4'
glibtoolize: copying file 'm4/lt~obsolete.m4'
glibtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
autoreconf: running: /usr/local/Cellar/autoconf/2.69/bin/autoconf --force
autoreconf: running: /usr/local/Cellar/autoconf/2.69/bin/autoheader --force
autoreconf: running: automake --add-missing --copy --force-missing
configure.ac:323: installing 'bin/compile'
configure.ac:38: installing 'bin/missing'
c++/src/Makefile.am: installing 'bin/depcomp'
autoreconf: Leaving directory `.'
Raw
02.configure
2016-11-28 01:06:39 -0500
./configure
--prefix=/usr/local/Cellar/hdf5/1.8.17
--enable-production
--enable-debug=no
--disable-dependency-tracking
--with-zlib=/usr
--with-szlib=/usr/local/opt/szip
--enable-static=yes
--enable-shared=yes
--disable-cxx
--disable-fortran
--enable-parallel
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... bin/install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... x86_64-apple-darwin15.6.0
checking host system type... x86_64-apple-darwin15.6.0
checking shell variables initial values... done
checking if basename works... yes
checking if xargs works... yes
checking for cached host... none
checking for config x86_64-apple-darwin15.6.0... no
checking for config x86_64-apple-darwin15.6.0... no
checking for config apple-darwin15.6.0... no
checking for config apple-darwin15.6.0... no
checking for config x86_64-darwin15.6.0... no
checking for config x86_64-darwin15.6.0... no
checking for config x86_64-apple... no
checking for config darwin15.6.0... no
checking for config darwin15.6.0... no
checking for config apple... found
No match to get fc_version_info and flags for /usr/local/bin/mpif90
No match to get cxx_version_info for /usr/local/bin/mpicxx
checking for config ./config/site-specific/host-Noahs-MacBook-Pro.local... no
checking for config ./config/site-specific/host-local... no
checking for gcc... /usr/local/bin/mpicc
checking whether the C compiler works... no
configure: error: in `/private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17':
configure: error: C compiler cannot create executables
See `config.log' for more details
HOMEBREW_VERSION: 1.1.1-95-g84b3c57
ORIGIN: https://github.com/Homebrew/brew.git
HEAD: 84b3c57086d201ea07070a1b4d1b0520e2d7134a
Last commit: 22 hours ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: 158decbf79ffbd01893cb78ee6756680a977a9fc
Core tap last commit: 3 hours ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_REPOSITORY: /usr/local/Homebrew
HOMEBREW_CELLAR: /usr/local/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://homebrew.bintray.com
CPU: quad-core 64-bit haswell
Homebrew Ruby: 2.0.0-p648
Clang: 7.3 build 703
Git: 2.7.4 => /Library/Developer/CommandLineTools/usr/bin/git
Perl: /usr/bin/perl
Python: /usr/bin/python
Ruby: /usr/bin/ruby => /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby
Java: 1.8.0_51, 1.6.0_65-b14-468
macOS: 10.11.6-x86_64
Xcode: 8.1
CLT: 7.3.1.0.1.1461711523
X11: 2.7.9 => /opt/X11
CC: /usr/local/bin/mpicc => /usr/local/Cellar/open-mpi/2.0.1/bin/opal_wrapper
CXX: /usr/local/bin/mpicxx => /usr/local/Cellar/open-mpi/2.0.1/bin/opal_wrapper
OBJC: clang
OBJCXX: clang++
HOMEBREW_CC: clang
HOMEBREW_CXX: clang++
SDKROOT: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk
MAKEFLAGS: -j4
CMAKE_PREFIX_PATH: /usr/local
CMAKE_INCLUDE_PATH: /usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
CMAKE_LIBRARY_PATH: /System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
MACOSX_DEPLOYMENT_TARGET: 10.11
PKG_CONFIG_PATH: /usr/local/opt/open-mpi/lib/pkgconfig
PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/10.11
ACLOCAL_PATH: /usr/local/share/aclocal
PATH: /usr/local/Homebrew/Library/Homebrew/shims/super:/usr/local/opt/autoconf/bin:/usr/local/opt/automake/bin:/usr/local/opt/libtool/bin:/usr/local/opt/open-mpi/bin:/usr/bin:/bin:/usr/sbin:/sbin
Raw
02.configure.cc
clang called with: -v
superenv executed: clang -v
clang called with: -V
superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
superenv executed: clang -pipe -Os -march=native -V -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -V
superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
superenv executed: clang -pipe -Os -march=native -V -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: --version
superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
superenv executed: clang -pipe -Os -march=native --version -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -v
superenv executed: clang -v
clang called with: -V
superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
superenv executed: clang -pipe -Os -march=native -V -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -qversion
superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
superenv executed: clang -pipe -Os -march=native -qversion -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: conftest.c -I/usr/local/Cellar/open-mpi/2.0.1/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/2.0.1/lib -lmpi
superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
superenv executed: clang -pipe -Os -march=native conftest.c -I/usr/local/Cellar/open-mpi/2.0.1/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/2.0.1/lib -lmpi -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
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config.log
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by HDF5 configure 1.8.17, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure --prefix=/usr/local/Cellar/hdf5/1.8.17 --enable-production --enable-debug=no --disable-dependency-tracking --with-zlib=/usr --with-szlib=/usr/local/opt/szip --enable-static=yes --enable-shared=yes --disable-cxx --disable-fortran --enable-parallel
## --------- ##
## Platform. ##
## --------- ##
hostname = Noahs-MacBook-Pro.local
uname -m = x86_64
uname -r = 15.6.0
uname -s = Darwin
uname -v = Darwin Kernel Version 15.6.0: Thu Sep 1 15:01:16 PDT 2016; root:xnu-3248.60.11~2/RELEASE_X86_64
/usr/bin/uname -p = i386
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = Mach kernel version:
Darwin Kernel Version 15.6.0: Thu Sep 1 15:01:16 PDT 2016; root:xnu-3248.60.11~2/RELEASE_X86_64
Kernel configured for up to 4 processors.
2 processors are physically available.
4 processors are logically available.
Processor type: x86_64h (Intel x86-64h Haswell)
Processors active: 0 1 2 3
Primary memory available: 8.00 gigabytes
Default processor set: 298 tasks, 1599 threads, 4 processors
Load average: 2.10, Mach factor: 1.90
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/local/Homebrew/Library/Homebrew/shims/super
PATH: /usr/local/opt/autoconf/bin
PATH: /usr/local/opt/automake/bin
PATH: /usr/local/opt/libtool/bin
PATH: /usr/local/opt/open-mpi/bin
PATH: /usr/bin
PATH: /bin
PATH: /usr/sbin
PATH: /sbin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:3082: checking for a BSD-compatible install
configure:3150: result: /usr/bin/install -c
configure:3161: checking whether build environment is sane
configure:3216: result: yes
configure:3367: checking for a thread-safe mkdir -p
configure:3406: result: bin/install-sh -c -d
configure:3413: checking for gawk
configure:3443: result: no
configure:3413: checking for mawk
configure:3443: result: no
configure:3413: checking for nawk
configure:3443: result: no
configure:3413: checking for awk
configure:3429: found /usr/bin/awk
configure:3440: result: awk
configure:3451: checking whether make sets $(MAKE)
configure:3473: result: yes
configure:3502: checking whether make supports nested variables
configure:3519: result: yes
configure:3656: checking whether make supports nested variables
configure:3673: result: yes
configure:3696: checking whether to enable maintainer-specific portions of Makefiles
configure:3705: result: no
configure:3754: checking build system type
configure:3768: result: x86_64-apple-darwin15.6.0
configure:3788: checking host system type
configure:3801: result: x86_64-apple-darwin15.6.0
configure:3869: checking shell variables initial values
ACLOCAL='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/missing aclocal-1.15'
ACLOCAL_PATH=/usr/local/share/aclocal
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CFLAGS=
AM_CPPFLAGS=
AM_CXXFLAGS=
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY=0
AM_FCFLAGS=
AM_LDFLAGS=
AM_V='$(V)'
AUTOCONF='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/missing autoconf'
AUTOHEADER='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/missing autoheader'
AUTOMAKE='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/missing automake-1.15'
AWK=awk
Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.NoGlgb1CWL/Render
BASH=/bin/sh
BASH_ARGC=([0]="11")
BASH_ARGV=([0]="--enable-parallel" [1]="--disable-fortran" [2]="--disable-cxx" [3]="--enable-shared=yes" [4]="--enable-static=yes" [5]="--with-szlib=/usr/local/opt/szip" [6]="--with-zlib=/usr" [7]="--disable-dependency-tracking" [8]="--enable-debug=no" [9]="--enable-production" [10]="--prefix=/usr/local/Cellar/hdf5/1.8.17")
BASH_LINENO=([0]="0")
BASH_SOURCE=([0]="./configure")
BASH_VERSINFO=([0]="3" [1]="2" [2]="57" [3]="1" [4]="release" [5]="x86_64-apple-darwin15")
BASH_VERSION='3.2.57(1)-release'
CC=/usr/local/bin/mpicc
CFLAGS=
CLICOLOR=1
CMAKE_INCLUDE_PATH=/usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
CMAKE_LIBRARY_PATH=/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
CMAKE_PREFIX_PATH=/usr/local
COLORFGBG='7;0'
CPPFLAGS=
CUDA_HOME=/usr/local/cuda
CURL_HOME=/Users/noah
CXX=/usr/local/bin/mpicxx
CXXFLAGS=
CYGPATH_W=echo
DIRSTACK=()
DISPLAY=/private/tmp/com.apple.launchd.9xbtc9ZnGi/org.macosforge.xquartz:0
DUALCASE=1
ECHO_C='\c'
ECHO_N=
ECHO_T=
EDITOR=/Applications/Emacs.app/Contents/MacOS/Emacs
EMACS=/Applications/Emacs.app/Contents/MacOS/Emacs
EUID=501
FC=/usr/local/bin/mpif90
FCFLAGS=
GEM_OLD_HOME=
GEM_OLD_PATH=
GIT_EDITOR='emacsclient -c --alternate-editor="vim"'
GROUPS=()
HOME=/private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/.brew_home
HOMEBREW_ANALYTICS_ID=UA-76679469-1
HOMEBREW_ANALYTICS_USER_UUID=EBE00F0A-DD16-421D-A08D-89CC9BEEC1C4
HOMEBREW_ARCHFLAGS=
HOMEBREW_BREW_FILE=/usr/local/bin/brew
HOMEBREW_CACHE=/Users/noah/Library/Caches/Homebrew
HOMEBREW_CC=clang
HOMEBREW_CCCFG=sa
HOMEBREW_CC_LOG_PATH=/Users/noah/Library/Logs/Homebrew/hdf5/02.configure
HOMEBREW_CELLAR=/usr/local/Cellar
HOMEBREW_COMMAND_DEPTH=1
HOMEBREW_CURL=/usr/bin/curl
HOMEBREW_CXX=clang++
HOMEBREW_DEPENDENCIES=szip,autoconf,automake,libtool,open-mpi
HOMEBREW_DEV_CMD_RUN=1
HOMEBREW_ENABLE_AUTO_UPDATE_MIGRATION=1
HOMEBREW_ERROR_PIPE=/tmp/homebrew20161128-9250-1goewrl/socket
HOMEBREW_FORMULA_PREFIX=/usr/local/Cellar/hdf5/1.8.17
HOMEBREW_GIT_CONFIG_FILE=/usr/local/Homebrew/.git/config
HOMEBREW_ISYSTEM_PATHS=/usr/local/include:/usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
HOMEBREW_LIBRARY=/usr/local/Homebrew/Library
HOMEBREW_LIBRARY_PATHS=/usr/local/lib:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
HOMEBREW_MACOS_VERSION=10.11.6
HOMEBREW_NO_AUTO_UPDATE=1
HOMEBREW_OPT=/usr/local/opt
HOMEBREW_OPTFLAGS=-march=native
HOMEBREW_OPTIMIZATION_LEVEL=Os
HOMEBREW_OS_VERSION='macOS 10.11.6'
HOMEBREW_PREFER_CLT_PROXIES=1
HOMEBREW_PREFIX=/usr/local
HOMEBREW_PROCESSOR=Intel
HOMEBREW_PRODUCT=Homebrew
HOMEBREW_REPOSITORY=/usr/local/Homebrew
HOMEBREW_RUBY_PATH=/System/Library/Frameworks/Ruby.framework/Versions/Current/usr/bin/ruby
HOMEBREW_SYSTEM=Macintosh
HOMEBREW_TEMP=/tmp
HOMEBREW_USER_AGENT='Homebrew/1.1.1-95-g84b3c57 (Macintosh; Intel macOS 10.11.6)'
HOMEBREW_USER_AGENT_CURL='Homebrew/1.1.1-95-g84b3c57 (Macintosh; Intel macOS 10.11.6) curl/7.43.0'
HOMEBREW_VERSION=1.1.1-95-g84b3c57
HOSTNAME=Noahs-MacBook-Pro.local
HOSTTYPE=x86_64
IFS='
'
INSTALL='/usr/bin/install -c'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
ITERM_PROFILE='New Profile'
ITERM_SESSION_ID=w0t1p0:9A676684-A763-42AB-8E70-AC98B4C8BB74
LANG=en_US.UTF-8
LANGUAGE=C
LC_ALL=C
LDFLAGS=
LIBOBJS=
LINENO=3869
LOGNAME=noah
LSCOLORS=dxfxcxdxbxegedabagacad
M4=/usr/bin/m4
MACHTYPE=x86_64-apple-darwin15
MACOSX_DEPLOYMENT_TARGET=10.11
MAINT='#'
MAINTAINER_MODE_FALSE=
MAINTAINER_MODE_TRUE='#'
MAKEFLAGS=
MAKEINFO='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/missing makeinfo'
MANPATH=:/Users/noah/.fzf/man
MFLAGS=
MISSING='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/missing'
MKDIR_P='bin/install-sh -c -d'
MPICC=/usr/local/bin/mpicc
MPICXX=/usr/local/bin/mpicxx
MPIFC=/usr/local/bin/mpif90
OBJC=clang
OBJCXX=clang++
OPTERR=1
OPTIND=1
OSTYPE=darwin15
PACKAGE=hdf5
PACKAGE_BUGREPORT=help@hdfgroup.org
PACKAGE_NAME=HDF5
PACKAGE_STRING='HDF5 1.8.17'
PACKAGE_TARNAME=hdf5
PACKAGE_URL=
PACKAGE_VERSION=1.8.17
PAGER=less
PATH=/usr/local/Homebrew/Library/Homebrew/shims/super:/usr/local/opt/autoconf/bin:/usr/local/opt/automake/bin:/usr/local/opt/libtool/bin:/usr/local/opt/open-mpi/bin:/usr/bin:/bin:/usr/sbin:/sbin
PATH_SEPARATOR=:
PIPESTATUS=([0]="0")
PKG_CONFIG_LIBDIR=/usr/lib/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/10.11
PKG_CONFIG_PATH=/usr/local/opt/open-mpi/lib/pkgconfig
POSIXLY_CORRECT=y
PPID=9971
PS1='$ '
PS2='> '
PS4='+ '
PWD=/private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17
PYTHONPATH=/Users/noah/workspace/multicloudstochfmk13:
SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk
SET_MAKE=
SHELL=/bin/sh
SHELLOPTS=braceexpand:hashall:interactive-comments:posix
SHLVL=2
SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.WhbMlzf5ey/Listeners
TEMP=/tmp
TERM=xterm-256color
TERM_PROGRAM=iTerm.app
TERM_PROGRAM_VERSION=3.0.12
TERM_SESSION_ID=w0t1p0:9A676684-A763-42AB-8E70-AC98B4C8BB74
TMP=/tmp
TMPDIR=/tmp
UID=501
USER=noah
USE_MAINTAINER_MODE=no
VERSION=1.8.17
XPC_FLAGS=0x0
XPC_SERVICE_NAME=0
_='checking shell variables initial values... '
__CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0
_am_tools='gnutar pax cpio none'
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ac_abs_confdir=/private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17
ac_arg=CXX=/usr/local/bin/mpicxx
ac_aux_dir=bin
ac_build_alias=x86_64-apple-darwin15.6.0
ac_cache_corrupted=false
ac_clean_files=
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_compiler_gnu=
ac_confdir=.
ac_config_commands=' pubconf'
ac_config_guess='/bin/sh bin/config.guess'
ac_config_headers=' src/H5config.h'
ac_config_libobj_dir=.
ac_config_sub='/bin/sh bin/config.sub'
ac_configure='/bin/sh bin/configure'
ac_configure_args=' '\''--prefix=/usr/local/Cellar/hdf5/1.8.17'\'' '\''--enable-production'\'' '\''--enable-debug=no'\'' '\''--disable-dependency-tracking'\'' '\''--with-zlib=/usr'\'' '\''--with-szlib=/usr/local/opt/szip'\'' '\''--enable-static=yes'\'' '\''--enable-shared=yes'\'' '\''--disable-cxx'\'' '\''--disable-fortran'\'' '\''--enable-parallel'\'' '\''CC=/usr/local/bin/mpicc'\'' '\''FC=/usr/local/bin/mpif90'\'' '\''CXX=/usr/local/bin/mpicxx'\'''
ac_cpp='$CPP $CPPFLAGS'
ac_cv_build=x86_64-apple-darwin15.6.0
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=/usr/local/bin/mpicc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=/usr/local/bin/mpicxx
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=set
ac_cv_env_FC_value=/usr/local/bin/mpif90
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_basename_r=no
ac_cv_func_clock_getres=no
ac_cv_func_clock_gettime=no
ac_cv_func_clock_settime=no
ac_cv_func_dirname_r=no
ac_cv_func_getentropy=no
ac_cv_func_mkostemp=no
ac_cv_func_mkostemps=no
ac_cv_func_timingsafe_bcmp=no
ac_cv_host=x86_64-apple-darwin15.6.0
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=awk
ac_cv_prog_make_make_set=yes
ac_cv_search_clock_gettime=no
ac_dashdash=
ac_default_prefix=/private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/hdf5
ac_dir=bin
ac_env_CCC_set=
ac_env_CCC_value=
ac_env_CC_set=set
ac_env_CC_value=/usr/local/bin/mpicc
ac_env_CFLAGS_set=
ac_env_CFLAGS_value=
ac_env_CPPFLAGS_set=
ac_env_CPPFLAGS_value=
ac_env_CPP_set=
ac_env_CPP_value=
ac_env_CXXCPP_set=
ac_env_CXXCPP_value=
ac_env_CXXFLAGS_set=
ac_env_CXXFLAGS_value=
ac_env_CXX_set=set
ac_env_CXX_value=/usr/local/bin/mpicxx
ac_env_FCFLAGS_set=
ac_env_FCFLAGS_value=
ac_env_FC_set=set
ac_env_FC_value=/usr/local/bin/mpif90
ac_env_LDFLAGS_set=
ac_env_LDFLAGS_value=
ac_env_LIBS_set=
ac_env_LIBS_value=
ac_env_LT_SYS_LIBRARY_PATH_set=
ac_env_LT_SYS_LIBRARY_PATH_value=
ac_env_build_alias_set=
ac_env_build_alias_value=
ac_env_host_alias_set=
ac_env_host_alias_value=
ac_env_target_alias_set=
ac_env_target_alias_value=
ac_exec_ext=
ac_ext=c
ac_have_clock_syscall=no
ac_hostname=Noahs-MacBook-Pro.local
ac_includes_default='#include <stdio.h>
#ifdef HAVE_SYS_TYPES_H
# include <sys/types.h>
#endif
#ifdef HAVE_SYS_STAT_H
# include <sys/stat.h>
#endif
#ifdef STDC_HEADERS
# include <stdlib.h>
# include <stddef.h>
#else
# ifdef HAVE_STDLIB_H
# include <stdlib.h>
# endif
#endif
#ifdef HAVE_STRING_H
# if !defined STDC_HEADERS && defined HAVE_MEMORY_H
# include <memory.h>
# endif
# include <string.h>
#endif
#ifdef HAVE_STRINGS_H
# include <strings.h>
#endif
#ifdef HAVE_INTTYPES_H
# include <inttypes.h>
#endif
#ifdef HAVE_STDINT_H
# include <stdint.h>
#endif
#ifdef HAVE_UNISTD_H
# include <unistd.h>
#endif'
ac_init_help=
ac_init_version=false
ac_install_sh='bin/install-sh -c'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_ls_di='29040915 .'
ac_make=make
ac_msg='sources are in ., but `cd .'\'' does not work'
ac_must_keep_next=false
ac_new_set=
ac_new_val=
ac_old_set=
ac_old_val=
ac_optarg=yes
ac_option=--enable-parallel
ac_pass=2
ac_precious_vars='build_alias
host_alias
target_alias
CC
CFLAGS
LDFLAGS
LIBS
CPPFLAGS
FC
FCFLAGS
CXX
CXXFLAGS
CCC
CXXCPP
LT_SYS_LIBRARY_PATH
CPP'
ac_prev=
ac_prog=awk
ac_pwd=/private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17
ac_pwd_ls_di='29040915 .'
ac_save_IFS='
'
ac_script='s/[\\$]/&&/g;s/;s,x,x,$//'
ac_signal=0
ac_site_file=/usr/local/Cellar/hdf5/1.8.17/etc/config.site
ac_site_file1=/usr/local/Cellar/hdf5/1.8.17/share/config.site
ac_site_file2=/usr/local/Cellar/hdf5/1.8.17/etc/config.site
ac_srcdir_defaulted=yes
ac_subst_files=
ac_subst_vars='am__EXEEXT_FALSE
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BUILD_FORTRAN_CONDITIONAL_FALSE
BUILD_FORTRAN_CONDITIONAL_TRUE
BUILD_PARALLEL_CONDITIONAL_FALSE
BUILD_PARALLEL_CONDITIONAL_TRUE
BUILD_CXX_CONDITIONAL_FALSE
BUILD_CXX_CONDITIONAL_TRUE
STRICT_FORMAT_CHECKS
DEFAULT_API_VERSION
DEPRECATED_SYMBOLS
BUILD_ALL_CONDITIONAL_FALSE
BUILD_ALL_CONDITIONAL_TRUE
ROOT
CXX_VERSION
FC_VERSION
CC_VERSION
WORDS_BIGENDIAN
BYTESEX
CONFIG_MODE
CONFIG_USER
CONFIG_DATE
H5_VERSION
DIRECT_VFD_CONDITIONAL_FALSE
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ADD_PARALLEL_FILES
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TRACE_API
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HAVE_PTHREAD
BUILD_SHARED_SZIP_CONDITIONAL_FALSE
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LL_PATH
USE_FILTER_SZIP
USE_FILTER_DEFLATE
AM_MAKEFLAGS
LT_STATIC_EXEC
USE_PLUGINS_CONDITIONAL_FALSE
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CPP
LT_SYS_LIBRARY_PATH
OTOOL64
OTOOL
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NMEDIT
DSYMUTIL
MANIFEST_TOOL
RANLIB
ac_ct_AR
DLLTOOL
OBJDUMP
LN_S
NM
ac_ct_DUMPBIN
DUMPBIN
LD
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FORTRAN_SHARED_CONDITIONAL_FALSE
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FORTRAN_HAVE_STORAGE_SIZE_FALSE
FORTRAN_HAVE_STORAGE_SIZE_TRUE
FORTRAN_HAVE_C_SIZEOF_FALSE
FORTRAN_HAVE_C_SIZEOF_TRUE
FORTRAN_HAVE_SIZEOF_FALSE
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FCLIBS
F9XMODEXT
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FCFLAGS_f90
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FCFLAGS
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HADDR_T
R_INTEGER
R_LARGE
HAVE_FORTRAN_2003
HDF5_INTERFACES
am__fastdepCC_FALSE
am__fastdepCC_TRUE
CCDEPMODE
am__nodep
AMDEPBACKSLASH
AMDEP_FALSE
AMDEP_TRUE
am__quote
am__include
DEPDIR
OBJEXT
EXEEXT
ac_ct_CC
LDFLAGS
CFLAGS
CC
UNAME_INFO
enable_static
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STATIC_SHARED
THREADSAFE
DIRECT_VFD
HAVE_DMALLOC
CODESTACK
INSTRUMENT
HDF5_HL
CXX
HDF_CXX
FC2003
FC
HDF_FORTRAN2003
HDF_FORTRAN
STATIC_EXEC
MPE
EXTERNAL_FILTERS
AM_LDFLAGS
AM_CPPFLAGS
AM_CXXFLAGS
AM_FCFLAGS
AM_CFLAGS
H5_LDFLAGS
H5_CXXFLAGS
H5_FCFLAGS
H5_CPPFLAGS
H5_CFLAGS
CPPFLAGS
host_os
host_vendor
host_cpu
host
build_os
build_vendor
build_cpu
build
MAINT
MAINTAINER_MODE_FALSE
MAINTAINER_MODE_TRUE
AM_BACKSLASH
AM_DEFAULT_VERBOSITY
AM_DEFAULT_V
AM_V
am__untar
am__tar
AMTAR
am__leading_dot
SET_MAKE
AWK
mkdir_p
MKDIR_P
INSTALL_STRIP_PROGRAM
STRIP
install_sh
MAKEINFO
AUTOHEADER
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AUTOCONF
ACLOCAL
VERSION
PACKAGE
CYGPATH_W
am__isrc
INSTALL_DATA
INSTALL_SCRIPT
INSTALL_PROGRAM
target_alias
host_alias
build_alias
LIBS
ECHO_T
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DEFS
mandir
localedir
libdir
psdir
pdfdir
dvidir
htmldir
infodir
docdir
oldincludedir
includedir
localstatedir
sharedstatedir
sysconfdir
datadir
datarootdir
libexecdir
sbindir
bindir
program_transform_name
prefix
exec_prefix
PACKAGE_URL
PACKAGE_BUGREPORT
PACKAGE_STRING
PACKAGE_VERSION
PACKAGE_TARNAME
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PATH_SEPARATOR
SHELL'
ac_tool_prefix=
ac_unique_file=src/H5.c
ac_unrecognized_opts=
ac_unrecognized_sep=
ac_user_opts='
enable_option_checking
enable_silent_rules
enable_maintainer_mode
enable_dependency_tracking
enable_unsupported
enable_fortran
enable_fortran2003
enable_cxx
enable_hl
enable_shared
enable_static
with_pic
enable_fast_install
with_aix_soname
with_gnu_ld
with_sysroot
enable_libtool_lock
enable_static_exec
enable_sharedlib_rpath
enable_production
with_fnord
with_dmalloc
with_zlib
with_szlib
enable_threadsafe
with_pthread
enable_debug
enable_codestack
enable_metadata_trace_file
enable_trace
enable_instrument
enable_clear_file_buffers
enable_using_memchecker
enable_parallel
with_mpe
enable_direct_vfd
with_default_plugindir
enable_dconv_exception
enable_dconv_accuracy
enable_build_all
enable_deprecated_symbols
with_default_api_version
enable_strict_format_checks
enable_embedded_libinfo
'
ac_useropt=parallel
ac_useropt_orig=parallel
ac_val='${datarootdir}/man'
ac_var=CPP
ac_word=awk
am__api_version=1.15
am__leading_dot=.
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
am_aux_dir=/private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin
am_cv_make_support_nested_variables=yes
am_lf='
'
am_make=make
am_missing_run='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/missing '
am_sleep_pid=11008
as_basename=basename
as_bourne_compatible='if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
emulate sh
NULLCMD=:
# Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
# is contrary to our usage. Disable this feature.
alias -g '\''${1+"$@"}'\''='\''"$@"'\''
setopt NO_GLOB_SUBST
else
case `(set -o) 2>/dev/null` in #(
*posix*) :
set -o posix ;; #(
*) :
;;
esac
fi
'
as_cr_LETTERS=ABCDEFGHIJKLMNOPQRSTUVWXYZ
as_cr_Letters=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ
as_cr_alnum=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789
as_cr_digits=0123456789
as_cr_letters=abcdefghijklmnopqrstuvwxyz
as_dir=/usr/bin
as_dirname=dirname
as_echo='printf %s\n'
as_echo_n='printf %s'
as_executable_p=as_fn_executable_p
as_expr=expr
as_have_required=yes
as_lineno_1=477
as_lineno_1a=477
as_lineno_2=478
as_lineno_2a=478
as_ln_s='ln -s'
as_me=configure
as_mkdir_p='mkdir -p "$as_dir"'
as_myself=./configure
as_nl='
'
as_required='as_fn_return () { (exit $1); }
as_fn_success () { as_fn_return 0; }
as_fn_failure () { as_fn_return 1; }
as_fn_ret_success () { return 0; }
as_fn_ret_failure () { return 1; }
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as_fn_success || { exitcode=1; echo as_fn_success failed.; }
as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; }
as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; }
as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; }
if ( set x; as_fn_ret_success y && test x = "$1" ); then :
else
exitcode=1; echo positional parameters were not saved.
fi
test x$exitcode = x0 || exit 1
test -x / || exit 1'
as_save_IFS='
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as_suggested=' as_lineno_1=198 as_lineno_1a=$LINENO
as_lineno_2=199 as_lineno_2a=$LINENO
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test -n "${ZSH_VERSION+set}${BASH_VERSION+set}" || (
ECHO='\''\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'\''
ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO
ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO$ECHO
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test "X`printf %s $ECHO`" = "X$ECHO" \
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test $(( 1 + 1 )) = 2 || exit 1'
as_test_x='test -x'
as_tr_cpp='eval sed '\''y%*abcdefghijklmnopqrstuvwxyz%PABCDEFGHIJKLMNOPQRSTUVWXYZ%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
as_tr_sh='eval sed '\''y%*+%pp%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
as_unset=as_fn_unset
as_var=MAILPATH
bindir='${exec_prefix}/bin'
build=x86_64-apple-darwin15.6.0
build_cpu=x86_64
build_os=darwin15.6.0
build_vendor=apple
cache_file=/dev/null
cross_compiling=no
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_cxx=no
enable_debug=no
enable_dependency_tracking=no
enable_fortran=no
enable_parallel=yes
enable_production=yes
enable_shared=yes
enable_static=yes
exec_prefix=NONE
host=x86_64-apple-darwin15.6.0
host_cpu=x86_64
host_os=darwin15.6.0
host_vendor=apple
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
no_create=
no_recursion=
oldincludedir=/usr/include
pdfdir='${docdir}'
prefix=/usr/local/Cellar/hdf5/1.8.17
program_prefix=NONE
program_suffix=NONE
program_transform_name=s,x,x,
psdir='${docdir}'
saved_user_CFLAGS=
saved_user_CPPFLAGS=
saved_user_CXXFLAGS=
saved_user_FCFLAGS=
saved_user_LDFLAGS=
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
silent=
site=
srcdir=.
subdirs=
sysconfdir='${prefix}/etc'
target=
verbose=
with_szlib=/usr/local/opt/szip
with_zlib=/usr
x_includes=NONE
x_libraries=NONE
configure:3872: result: done
configure:3921: checking if basename works
configure:3927: result: yes
configure:3932: checking if xargs works
configure:3938: result: yes
configure:3946: checking for cached host
configure:3953: result: none
configure:4007: checking for config x86_64-apple-darwin15.6.0
configure:4015: result: no
configure:4007: checking for config x86_64-apple-darwin15.6.0
configure:4015: result: no
configure:4007: checking for config apple-darwin15.6.0
configure:4015: result: no
configure:4007: checking for config apple-darwin15.6.0
configure:4015: result: no
configure:4007: checking for config x86_64-darwin15.6.0
configure:4015: result: no
configure:4007: checking for config x86_64-darwin15.6.0
configure:4015: result: no
configure:4007: checking for config x86_64-apple
configure:4015: result: no
configure:4007: checking for config darwin15.6.0
configure:4015: result: no
configure:4007: checking for config darwin15.6.0
configure:4015: result: no
configure:4007: checking for config apple
configure:4011: result: found
configure:4027: checking for config ./config/site-specific/host-Noahs-MacBook-Pro.local
configure:4035: result: no
configure:4027: checking for config ./config/site-specific/host-local
configure:4035: result: no
configure:4112: checking for gcc
configure:4139: result: /usr/local/bin/mpicc
configure:4368: checking for C compiler version
configure:4377: /usr/local/bin/mpicc --version >&5
Apple LLVM version 7.3.0 (clang-703.0.31)
Target: x86_64-apple-darwin15.6.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin
configure:4388: $? = 0
configure:4377: /usr/local/bin/mpicc -v >&5
Apple LLVM version 7.3.0 (clang-703.0.31)
Target: x86_64-apple-darwin15.6.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin
configure:4388: $? = 0
configure:4377: /usr/local/bin/mpicc -V >&5
clang: error: unsupported option '-V -isystem/usr/local/include'
configure:4388: $? = 1
configure:4377: /usr/local/bin/mpicc -qversion >&5
clang: error: unknown argument: '-qversion'
configure:4388: $? = 1
configure:4408: checking whether the C compiler works
configure:4430: /usr/local/bin/mpicc conftest.c >&5
ld: unexpected token: !tapi-tbd-v2 file '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/lib/libSystem.tbd' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
configure:4434: $? = 1
configure:4472: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "HDF5"
| #define PACKAGE_TARNAME "hdf5"
| #define PACKAGE_VERSION "1.8.17"
| #define PACKAGE_STRING "HDF5 1.8.17"
| #define PACKAGE_BUGREPORT "help@hdfgroup.org"
| #define PACKAGE_URL ""
| #define PACKAGE "hdf5"
| #define VERSION "1.8.17"
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:4477: error: in `/private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17':
configure:4479: error: C compiler cannot create executables
See `config.log' for more details
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=x86_64-apple-darwin15.6.0
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=/usr/local/bin/mpicc
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ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=/usr/local/bin/mpicxx
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=set
ac_cv_env_FC_value=/usr/local/bin/mpif90
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_basename_r=no
ac_cv_func_clock_getres=no
ac_cv_func_clock_gettime=no
ac_cv_func_clock_settime=no
ac_cv_func_dirname_r=no
ac_cv_func_getentropy=no
ac_cv_func_mkostemp=no
ac_cv_func_mkostemps=no
ac_cv_func_timingsafe_bcmp=no
ac_cv_host=x86_64-apple-darwin15.6.0
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=awk
ac_cv_prog_ac_ct_CC=/usr/local/bin/mpicc
ac_cv_prog_make_make_set=yes
ac_cv_search_clock_gettime=no
am_cv_make_support_nested_variables=yes
hdf5_cv_host=x86_64-apple-darwin15.6.0
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/missing aclocal-1.15'
ADD_PARALLEL_FILES=''
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CFLAGS=''
AM_CPPFLAGS=''
AM_CXXFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='0'
AM_FCFLAGS=''
AM_LDFLAGS=''
AM_MAKEFLAGS=''
AM_V='$(V)'
AR=''
AUTOCONF='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/missing autoconf'
AUTOHEADER='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/missing autoheader'
AUTOMAKE='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/missing automake-1.15'
AWK='awk'
BUILD_ALL_CONDITIONAL_FALSE=''
BUILD_ALL_CONDITIONAL_TRUE=''
BUILD_CXX_CONDITIONAL_FALSE=''
BUILD_CXX_CONDITIONAL_TRUE=''
BUILD_FORTRAN_CONDITIONAL_FALSE=''
BUILD_FORTRAN_CONDITIONAL_TRUE=''
BUILD_HDF5_HL_CONDITIONAL_FALSE=''
BUILD_HDF5_HL_CONDITIONAL_TRUE=''
BUILD_PARALLEL_CONDITIONAL_FALSE=''
BUILD_PARALLEL_CONDITIONAL_TRUE=''
BUILD_SHARED_SZIP_CONDITIONAL_FALSE=''
BUILD_SHARED_SZIP_CONDITIONAL_TRUE=''
BYTESEX=''
CC='/usr/local/bin/mpicc'
CCDEPMODE=''
CC_VERSION=''
CFLAGS=' '
CLEARFILEBUF=''
CODESTACK='no'
CONFIG_DATE=''
CONFIG_MODE=''
CONFIG_USER=''
CPP=''
CPPFLAGS=' '
CXX='/usr/local/bin/mpicxx'
CXXCPP=''
CXXDEPMODE=''
CXXFLAGS=' '
CXX_VERSION=''
CYGPATH_W='echo'
DEBUG_PKG=''
DEFAULT_API_VERSION=''
DEFS=''
DEPDIR=''
DEPRECATED_SYMBOLS=''
DIRECT_VFD='no'
DIRECT_VFD_CONDITIONAL_FALSE=''
DIRECT_VFD_CONDITIONAL_TRUE=''
DLLTOOL=''
DSYMUTIL=''
DUMPBIN=''
ECHO_C='\c'
ECHO_N=''
ECHO_T=''
EGREP=''
EXEEXT=''
EXTERNAL_FILTERS=''
F9XMODEXT=''
F9XMODFLAG=''
F9XSUFFIXFLAG=''
FC2003=''
FC='/usr/local/bin/mpif90'
FCFLAGS=' '
FCFLAGS_f90=''
FCLIBS=''
FC_VERSION=''
FGREP=''
FORTRAN_2003_CONDITIONAL_F_FALSE=''
FORTRAN_2003_CONDITIONAL_F_TRUE=''
FORTRAN_DEFAULT_REALisDBLE_F_FALSE=''
FORTRAN_DEFAULT_REALisDBLE_F_TRUE=''
FORTRAN_HAVE_C_SIZEOF_FALSE=''
FORTRAN_HAVE_C_SIZEOF_TRUE=''
FORTRAN_HAVE_SIZEOF_FALSE=''
FORTRAN_HAVE_SIZEOF_TRUE=''
FORTRAN_HAVE_STORAGE_SIZE_FALSE=''
FORTRAN_HAVE_STORAGE_SIZE_TRUE=''
FORTRAN_SHARED_CONDITIONAL_FALSE=''
FORTRAN_SHARED_CONDITIONAL_TRUE=''
FSEARCH_DIRS=''
GREP=''
H5_CFLAGS=''
H5_CPPFLAGS=''
H5_CXXFLAGS=''
H5_FCFLAGS=''
H5_FORTRAN_SHARED=''
H5_LDFLAGS=''
H5_VERSION=''
HADDR_T=''
HAVE_DMALLOC='no'
HAVE_FORTRAN_2003=''
HAVE_PTHREAD=''
HAVE_SHARED_CONDITIONAL_FALSE=''
HAVE_SHARED_CONDITIONAL_TRUE=''
HDF5_HL='yes'
HDF5_INTERFACES=''
HDF_CXX='no'
HDF_FORTRAN2003='no'
HDF_FORTRAN='no'
HID_T=''
HL=''
HL_FOR=''
HSIZE_T=''
HSSIZE_T=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INSTRUMENT=''
INSTRUMENT_LIBRARY=''
LD=''
LDFLAGS=' '
LIBOBJS=''
LIBS=''
LIBTOOL=''
LIPO=''
LL_PATH=''
LN_S=''
LTLIBOBJS=''
LT_STATIC_EXEC=''
LT_SYS_LIBRARY_PATH=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/missing makeinfo'
MANIFEST_TOOL=''
MKDIR_P='bin/install-sh -c -d'
MPE='no'
NM=''
NMEDIT=''
OBJDUMP=''
OBJECT_NAMELEN_DEFAULT_F=''
OBJEXT=''
OTOOL64=''
OTOOL=''
PACKAGE='hdf5'
PACKAGE_BUGREPORT='help@hdfgroup.org'
PACKAGE_NAME='HDF5'
PACKAGE_STRING='HDF5 1.8.17'
PACKAGE_TARNAME='hdf5'
PACKAGE_URL=''
PACKAGE_VERSION='1.8.17'
PARALLEL=''
PATH_SEPARATOR=':'
PERL=''
RANLIB=''
ROOT=''
RUNPARALLEL=''
RUNSERIAL=''
R_INTEGER=''
R_LARGE=''
SEARCH=''
SED=''
SET_MAKE=''
SHELL='/bin/sh'
SIZE_T=''
STATIC_EXEC='no'
STATIC_SHARED=''
STRICT_FORMAT_CHECKS=''
STRIP=''
TESTPARALLEL=''
THREADSAFE='no'
TIME=''
TR=''
TRACE_API=''
UNAME_INFO='Darwin Noahs-MacBook-Pro.local 15.6.0 Darwin Kernel Version 15.6.0: Thu Sep 1 15:01:16 PDT 2016; root:xnu-3248.60.11~2/RELEASE_X86_64 x86_64'
USE_FILTER_DEFLATE=''
USE_FILTER_SZIP=''
USE_PLUGINS_CONDITIONAL_FALSE=''
USE_PLUGINS_CONDITIONAL_TRUE=''
USINGMEMCHECKER=''
VERSION='1.8.17'
WORDS_BIGENDIAN=''
ac_ct_AR=''
ac_ct_CC='/usr/local/bin/mpicc'
ac_ct_CXX=''
ac_ct_DUMPBIN=''
ac_ct_FC=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE=''
am__include=''
am__isrc=''
am__leading_dot='.'
am__nodep=''
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-apple-darwin15.6.0'
build_alias=''
build_cpu='x86_64'
build_os='darwin15.6.0'
build_vendor='apple'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_shared='yes'
enable_static='yes'
exec_prefix='NONE'
host='x86_64-apple-darwin15.6.0'
host_alias=''
host_cpu='x86_64'
host_os='darwin15.6.0'
host_vendor='apple'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /private/tmp/hdf5-20161128-9971-9ijs2q/hdf5-1.8.17/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local/Cellar/hdf5/1.8.17'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.17"
#define PACKAGE_STRING "HDF5 1.8.17"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.17"
configure: exit 77
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