bedroge/Trim_Galore-0.6.10-GCCcore-11.3.0_partial.log

## Trim_Galore-0.6.10-GCCcore-11.3.0_partial.log
== 2023-03-28 14:38:14,509 easyblock.py:313 INFO This is EasyBuild 4.7.0 (framework: 4.7.0, easyblocks: 4.7.0) on host interactive1.
== 2023-03-28 14:38:14,509 easyblock.py:319 INFO This is easyblock Tarball from module easybuild.easyblocks.generic.tarball (/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/intel/skylake_avx512/software/EasyBuild/4.7.0/lib/python3.6/site-packages/easybuild/easyblocks/generic/tarball.py)
== 2023-03-28 14:38:14,509 easyblock.py:1040 INFO Build dir set to /home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0
== 2023-03-28 14:38:14,509 easyblock.py:1097 INFO Software install dir set to /home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0
== 2023-03-28 14:38:14,509 easyblock.py:1102 INFO Module install dir set to /home1/p251204/.local/easybuild/modules/all
== 2023-03-28 14:38:14,510 easyblock.py:288 INFO Init completed for application name Trim_Galore version 0.6.10
== 2023-03-28 14:38:14,510 easyblock.py:4146 INFO Obtained application instance of for Trim_Galore (easyblock: Tarball)
== 2023-03-28 14:38:14,510 easyconfig.py:1688 INFO Generating template values...
== 2023-03-28 14:38:14,510 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', github_account='trim_galore', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
== 2023-03-28 14:38:14,511 one.py:180 INFO Skipping reformatting value for parameter 'toolchain'
== 2023-03-28 14:38:14,511 filetools.py:1918 INFO Creating directory /tmp/eb-st0rygwx/reprod_20230328143814_3887094 (parents: True, set_gid: False, sticky: False)
== 2023-03-28 14:38:14,511 easyblock.py:4400 INFO Dumped easyconfig instance to /tmp/eb-st0rygwx/reprod_20230328143814_3887094/Trim_Galore-0.6.10-GCCcore-11.3.0.eb
== 2023-03-28 14:38:14,512 filetools.py:1918 INFO Creating directory /tmp/eb-st0rygwx/reprod_20230328143814_3887094/easyblocks (parents: True, set_gid: False, sticky: False)
== 2023-03-28 14:38:14,512 filetools.py:2431 INFO /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/intel/skylake_avx512/software/EasyBuild/4.7.0/lib/python3.6/site-packages/easybuild/easyblocks/generic/tarball.py copied to /tmp/eb-st0rygwx/reprod_20230328143814_3887094/easyblocks/tarball.py
== 2023-03-28 14:38:14,512 easyblock.py:4380 INFO Dumped easyblock tarball.py required for reproduction to /tmp/eb-st0rygwx/reprod_20230328143814_3887094/easyblocks
== 2023-03-28 14:38:14,514 easyblock.py:2177 INFO Number of iterations to perform for central part of installation procedure: 1
== 2023-03-28 14:38:14,514 build_log.py:267 INFO building and installing Trim_Galore/0.6.10-GCCcore-11.3.0...
== 2023-03-28 14:38:14,516 filetools.py:2011 INFO Lock /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock does not exist
== 2023-03-28 14:38:14,516 filetools.py:1952 INFO Creating lock at /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock...
== 2023-03-28 14:38:14,516 filetools.py:1918 INFO Creating directory /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock (parents: True, set_gid: False, sticky: False)
== 2023-03-28 14:38:14,517 filetools.py:1961 INFO Lock created: /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock
== 2023-03-28 14:38:14,517 build_log.py:267 INFO fetching files...
== 2023-03-28 14:38:14,517 easyblock.py:3872 INFO Starting fetch step
== 2023-03-28 14:38:14,517 easyconfig.py:1688 INFO Generating template values...
== 2023-03-28 14:38:14,518 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', builddir='/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0', github_account='trim_galore', installdir='/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
== 2023-03-28 14:38:14,518 easyblock.py:3880 INFO Running method fetch_step part of step fetch
== 2023-03-28 14:38:14,518 easyblock.py:2299 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2023-03-28 14:38:14,518 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for 0.6.10.tar.gz: /tmp/eb-st0rygwx/files_pr17611/t/Trim_Galore
== 2023-03-28 14:38:14,518 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/intel/skylake_avx512/software/EasyBuild/4.7.0/bin/eb
== 2023-03-28 14:38:14,518 tools.py:287 INFO Also considering installation prefix /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/intel/skylake_avx512/software/EasyBuild/4.7.0 (determined via path to 'eb' script)...
== 2023-03-28 14:38:14,523 filetools.py:1918 INFO Creating directory /home1/p251204/.local/easybuild/sources/t/Trim_Galore (parents: True, set_gid: False, sticky: False)
== 2023-03-28 14:38:14,951 filetools.py:821 INFO File size for https://github.com/FelixKrueger/TrimGalore/archive/0.6.10.tar.gz: 26831358
== 2023-03-28 14:38:16,193 filetools.py:828 INFO Downloaded file 0.6.10.tar.gz from url https://github.com/FelixKrueger/TrimGalore/archive/0.6.10.tar.gz to /home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz
== 2023-03-28 14:38:16,193 filetools.py:860 INFO Successful download of file 0.6.10.tar.gz from url https://github.com/FelixKrueger/TrimGalore/archive/0.6.10.tar.gz to path /home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz
== 2023-03-28 14:38:16,193 easyblock.py:939 INFO Successfully downloaded source file 0.6.10.tar.gz from https://github.com/FelixKrueger/TrimGalore/archive/0.6.10.tar.gz
== 2023-03-28 14:38:16,194 easyblock.py:496 INFO Added sources: [{'name': '0.6.10.tar.gz', 'path': '/home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz', 'cmd': None, 'checksum': '3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017', 'finalpath': '/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0'}]
== 2023-03-28 14:38:16,194 easyblock.py:2342 INFO no patches provided
== 2023-03-28 14:38:16,281 easyblock.py:2352 INFO md5 checksum for /home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz: ce8ea65db052838656fd3d760c17d9f9
== 2023-03-28 14:38:16,355 easyblock.py:2352 INFO sha256 checksum for /home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz: 3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017
== 2023-03-28 14:38:16,355 easyblock.py:2387 INFO Checking dirs that need to be created: ['/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', '/home1/p251204/.local/easybuild/modules/all/Trim_Galore', '/home1/p251204/.local/easybuild/modules/bio/Trim_Galore']
== 2023-03-28 14:38:16,355 filetools.py:1918 INFO Creating directory /home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0 (parents: True, set_gid: False, sticky: False)
== 2023-03-28 14:38:16,358 filetools.py:1918 INFO Creating directory /home1/p251204/.local/easybuild/modules/all/Trim_Galore (parents: True, set_gid: False, sticky: False)
== 2023-03-28 14:38:16,360 filetools.py:1918 INFO Creating directory /home1/p251204/.local/easybuild/modules/bio/Trim_Galore (parents: True, set_gid: False, sticky: False)
== 2023-03-28 14:38:16,361 build_log.py:267 INFO ... (took 1 secs)
== 2023-03-28 14:38:16,361 build_log.py:267 INFO creating build dir, resetting environment...
== 2023-03-28 14:38:16,361 easyblock.py:3872 INFO Starting ready step
== 2023-03-28 14:38:16,361 easyconfig.py:1688 INFO Generating template values...
== 2023-03-28 14:38:16,361 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', builddir='/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0', github_account='trim_galore', installdir='/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
== 2023-03-28 14:38:16,361 easyblock.py:3880 INFO Running method check_readiness_step part of step ready
== 2023-03-28 14:38:16,369 run.py:236 INFO running cmd: ulimit -u
== 2023-03-28 14:38:16,378 easyblock.py:2196 INFO Setting parallelism: 60
== 2023-03-28 14:38:16,447 easyblock.py:2248 WARNING Loaded modules detected: ['2023.01', 'StdEnv', 'EasyBuild/4.7.0']
== 2023-03-28 14:38:16,449 easyblock.py:3880 INFO Running method make_builddir part of step ready
== 2023-03-28 14:38:16,451 filetools.py:1918 INFO Creating directory /home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0 (parents: True, set_gid: False, sticky: False)
== 2023-03-28 14:38:16,455 easyblock.py:3880 INFO Running method reset_env part of step ready
== 2023-03-28 14:38:16,456 easyblock.py:3880 INFO Running method handle_iterate_opts part of step ready
== 2023-03-28 14:38:16,456 easyconfig.py:1688 INFO Generating template values...
== 2023-03-28 14:38:16,457 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', builddir='/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0', github_account='trim_galore', installdir='/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', parallel='60', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
== 2023-03-28 14:38:16,457 build_log.py:267 INFO unpacking...
== 2023-03-28 14:38:16,458 easyblock.py:3872 INFO Starting source step
== 2023-03-28 14:38:16,458 easyconfig.py:1688 INFO Generating template values...
== 2023-03-28 14:38:16,458 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', builddir='/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0', github_account='trim_galore', installdir='/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', parallel='60', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
== 2023-03-28 14:38:16,459 easyblock.py:3880 INFO Running method checksum_step part of step source
== 2023-03-28 14:38:16,531 easyblock.py:2405 INFO Checksum verification for /home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz using 3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017 passed.
== 2023-03-28 14:38:16,532 easyblock.py:3880 INFO Running method extract_step part of step source
== 2023-03-28 14:38:16,532 easyblock.py:2512 INFO Unpacking source 0.6.10.tar.gz
== 2023-03-28 14:38:16,533 run.py:236 INFO running cmd: tar xzf /home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz
== 2023-03-28 14:38:16,987 build_log.py:267 INFO patching...
== 2023-03-28 14:38:16,987 easyblock.py:3872 INFO Starting patch step
== 2023-03-28 14:38:16,988 easyconfig.py:1688 INFO Generating template values...
== 2023-03-28 14:38:16,989 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', builddir='/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0', github_account='trim_galore', installdir='/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', parallel='60', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
== 2023-03-28 14:38:16,989 easyblock.py:3880 INFO Running method patch_step part of step patch
== 2023-03-28 14:38:16,989 build_log.py:267 INFO preparing...
== 2023-03-28 14:38:16,989 easyblock.py:3872 INFO Starting prepare step
== 2023-03-28 14:38:16,990 easyconfig.py:1688 INFO Generating template values...
== 2023-03-28 14:38:16,990 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', builddir='/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0', github_account='trim_galore', installdir='/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', parallel='60', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
== 2023-03-28 14:38:16,991 easyblock.py:3880 INFO Running method prepare_step part of step prepare
== 2023-03-28 14:38:16,993 modules.py:628 INFO Checking whether Python/3.10.4-GCCcore-11.3.0 exists...
== 2023-03-28 14:38:16,993 modules.py:633 INFO Module Python/3.10.4-GCCcore-11.3.0 exists (found in list of available modules)
== 2023-03-28 14:38:16,993 modules.py:656 INFO Result for existence check of Python/3.10.4-GCCcore-11.3.0 module: True
== 2023-03-28 14:38:16,993 modules.py:628 INFO Checking whether Java/11 exists...
== 2023-03-28 14:38:16,993 modules.py:633 INFO Module Java/11 exists (found in list of available modules)
== 2023-03-28 14:38:16,993 modules.py:656 INFO Result for existence check of Java/11 module: True
== 2023-03-28 14:38:16,993 modules.py:628 INFO Checking whether pigz/2.7-GCCcore-11.3.0 exists...
== 2023-03-28 14:38:16,993 modules.py:636 INFO Module pigz/2.7-GCCcore-11.3.0 not found in list of available modules, checking via 'module show'...
== 2023-03-28 14:38:17,200 modules.py:649 INFO Module pigz/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-03-28 14:38:17,202 modules.py:656 INFO Result for existence check of pigz/2.7-GCCcore-11.3.0 module: False
== 2023-03-28 14:38:17,202 modules.py:628 INFO Checking whether Perl/5.34.1-GCCcore-11.3.0 exists...
== 2023-03-28 14:38:17,202 modules.py:633 INFO Module Perl/5.34.1-GCCcore-11.3.0 exists (found in list of available modules)
== 2023-03-28 14:38:17,203 modules.py:656 INFO Result for existence check of Perl/5.34.1-GCCcore-11.3.0 module: True
== 2023-03-28 14:38:17,203 modules.py:628 INFO Checking whether cutadapt/4.2-GCCcore-11.3.0 exists...
== 2023-03-28 14:38:17,203 modules.py:636 INFO Module cutadapt/4.2-GCCcore-11.3.0 not found in list of available modules, checking via 'module show'...
== 2023-03-28 14:38:17,445 modules.py:649 INFO Module cutadapt/4.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-03-28 14:38:17,448 modules.py:656 INFO Result for existence check of cutadapt/4.2-GCCcore-11.3.0 module: False
== 2023-03-28 14:38:17,449 modules.py:628 INFO Checking whether FastQC/0.11.9-Java-11 exists...
== 2023-03-28 14:38:17,449 modules.py:636 INFO Module FastQC/0.11.9-Java-11 not found in list of available modules, checking via 'module show'...
== 2023-03-28 14:38:17,680 modules.py:649 INFO Module FastQC/0.11.9-Java-11 not found via module avail/show, checking whether it is a wrapper
== 2023-03-28 14:38:17,689 modules.py:656 INFO Result for existence check of FastQC/0.11.9-Java-11 module: False
== 2023-03-28 14:38:19,224 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): Missing modules for dependencies (use --robot?): pigz/2.7-GCCcore-11.3.0, cutadapt/4.2-GCCcore-11.3.0, FastQC/0.11.9-Java-11 (at easybuild/tools/toolchain/toolchain.py:559 in _check_dependencies)
== 2023-03-28 14:38:19,226 build_log.py:267 INFO ... (took 2 secs)
== 2023-03-28 14:38:19,226 filetools.py:2019 INFO Removing lock /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock...
== 2023-03-28 14:38:19,230 filetools.py:384 INFO Path /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock successfully removed.
== 2023-03-28 14:38:19,230 filetools.py:2023 INFO Lock removed: /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock
== 2023-03-28 14:38:19,230 easyblock.py:4203 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): pigz/2.7-GCCcore-11.3.0, cutadapt/4.2-GCCcore-11.3.0, FastQC/0.11.9-Java-11
== 2023-03-28 14:38:19,230 easyblock.py:328 INFO Closing log for application name Trim_Galore version 0.6.10
	== 2023-03-28 14:38:14,509 easyblock.py:313 INFO This is EasyBuild 4.7.0 (framework: 4.7.0, easyblocks: 4.7.0) on host interactive1.
	== 2023-03-28 14:38:14,509 easyblock.py:319 INFO This is easyblock Tarball from module easybuild.easyblocks.generic.tarball (/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/intel/skylake_avx512/software/EasyBuild/4.7.0/lib/python3.6/site-packages/easybuild/easyblocks/generic/tarball.py)
	== 2023-03-28 14:38:14,509 easyblock.py:1040 INFO Build dir set to /home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0
	== 2023-03-28 14:38:14,509 easyblock.py:1097 INFO Software install dir set to /home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0
	== 2023-03-28 14:38:14,509 easyblock.py:1102 INFO Module install dir set to /home1/p251204/.local/easybuild/modules/all
	== 2023-03-28 14:38:14,510 easyblock.py:288 INFO Init completed for application name Trim_Galore version 0.6.10
	== 2023-03-28 14:38:14,510 easyblock.py:4146 INFO Obtained application instance of for Trim_Galore (easyblock: Tarball)
	== 2023-03-28 14:38:14,510 easyconfig.py:1688 INFO Generating template values...
	== 2023-03-28 14:38:14,510 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', github_account='trim_galore', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
	== 2023-03-28 14:38:14,511 one.py:180 INFO Skipping reformatting value for parameter 'toolchain'
	== 2023-03-28 14:38:14,511 filetools.py:1918 INFO Creating directory /tmp/eb-st0rygwx/reprod_20230328143814_3887094 (parents: True, set_gid: False, sticky: False)
	== 2023-03-28 14:38:14,511 easyblock.py:4400 INFO Dumped easyconfig instance to /tmp/eb-st0rygwx/reprod_20230328143814_3887094/Trim_Galore-0.6.10-GCCcore-11.3.0.eb
	== 2023-03-28 14:38:14,512 filetools.py:1918 INFO Creating directory /tmp/eb-st0rygwx/reprod_20230328143814_3887094/easyblocks (parents: True, set_gid: False, sticky: False)
	== 2023-03-28 14:38:14,512 filetools.py:2431 INFO /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/intel/skylake_avx512/software/EasyBuild/4.7.0/lib/python3.6/site-packages/easybuild/easyblocks/generic/tarball.py copied to /tmp/eb-st0rygwx/reprod_20230328143814_3887094/easyblocks/tarball.py
	== 2023-03-28 14:38:14,512 easyblock.py:4380 INFO Dumped easyblock tarball.py required for reproduction to /tmp/eb-st0rygwx/reprod_20230328143814_3887094/easyblocks
	== 2023-03-28 14:38:14,514 easyblock.py:2177 INFO Number of iterations to perform for central part of installation procedure: 1
	== 2023-03-28 14:38:14,514 build_log.py:267 INFO building and installing Trim_Galore/0.6.10-GCCcore-11.3.0...
	== 2023-03-28 14:38:14,516 filetools.py:2011 INFO Lock /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock does not exist
	== 2023-03-28 14:38:14,516 filetools.py:1952 INFO Creating lock at /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock...
	== 2023-03-28 14:38:14,516 filetools.py:1918 INFO Creating directory /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock (parents: True, set_gid: False, sticky: False)
	== 2023-03-28 14:38:14,517 filetools.py:1961 INFO Lock created: /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock
	== 2023-03-28 14:38:14,517 build_log.py:267 INFO fetching files...
	== 2023-03-28 14:38:14,517 easyblock.py:3872 INFO Starting fetch step
	== 2023-03-28 14:38:14,517 easyconfig.py:1688 INFO Generating template values...
	== 2023-03-28 14:38:14,518 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', builddir='/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0', github_account='trim_galore', installdir='/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
	== 2023-03-28 14:38:14,518 easyblock.py:3880 INFO Running method fetch_step part of step fetch
	== 2023-03-28 14:38:14,518 easyblock.py:2299 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
	== 2023-03-28 14:38:14,518 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for 0.6.10.tar.gz: /tmp/eb-st0rygwx/files_pr17611/t/Trim_Galore
	== 2023-03-28 14:38:14,518 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/intel/skylake_avx512/software/EasyBuild/4.7.0/bin/eb
	== 2023-03-28 14:38:14,518 tools.py:287 INFO Also considering installation prefix /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/intel/skylake_avx512/software/EasyBuild/4.7.0 (determined via path to 'eb' script)...
	== 2023-03-28 14:38:14,523 filetools.py:1918 INFO Creating directory /home1/p251204/.local/easybuild/sources/t/Trim_Galore (parents: True, set_gid: False, sticky: False)
	== 2023-03-28 14:38:14,951 filetools.py:821 INFO File size for https://github.com/FelixKrueger/TrimGalore/archive/0.6.10.tar.gz: 26831358
	== 2023-03-28 14:38:16,193 filetools.py:828 INFO Downloaded file 0.6.10.tar.gz from url https://github.com/FelixKrueger/TrimGalore/archive/0.6.10.tar.gz to /home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz
	== 2023-03-28 14:38:16,193 filetools.py:860 INFO Successful download of file 0.6.10.tar.gz from url https://github.com/FelixKrueger/TrimGalore/archive/0.6.10.tar.gz to path /home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz
	== 2023-03-28 14:38:16,193 easyblock.py:939 INFO Successfully downloaded source file 0.6.10.tar.gz from https://github.com/FelixKrueger/TrimGalore/archive/0.6.10.tar.gz
	== 2023-03-28 14:38:16,194 easyblock.py:496 INFO Added sources: [{'name': '0.6.10.tar.gz', 'path': '/home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz', 'cmd': None, 'checksum': '3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017', 'finalpath': '/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0'}]
	== 2023-03-28 14:38:16,194 easyblock.py:2342 INFO no patches provided
	== 2023-03-28 14:38:16,281 easyblock.py:2352 INFO md5 checksum for /home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz: ce8ea65db052838656fd3d760c17d9f9
	== 2023-03-28 14:38:16,355 easyblock.py:2352 INFO sha256 checksum for /home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz: 3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017
	== 2023-03-28 14:38:16,355 easyblock.py:2387 INFO Checking dirs that need to be created: ['/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', '/home1/p251204/.local/easybuild/modules/all/Trim_Galore', '/home1/p251204/.local/easybuild/modules/bio/Trim_Galore']
	== 2023-03-28 14:38:16,355 filetools.py:1918 INFO Creating directory /home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0 (parents: True, set_gid: False, sticky: False)
	== 2023-03-28 14:38:16,358 filetools.py:1918 INFO Creating directory /home1/p251204/.local/easybuild/modules/all/Trim_Galore (parents: True, set_gid: False, sticky: False)
	== 2023-03-28 14:38:16,360 filetools.py:1918 INFO Creating directory /home1/p251204/.local/easybuild/modules/bio/Trim_Galore (parents: True, set_gid: False, sticky: False)
	== 2023-03-28 14:38:16,361 build_log.py:267 INFO ... (took 1 secs)
	== 2023-03-28 14:38:16,361 build_log.py:267 INFO creating build dir, resetting environment...
	== 2023-03-28 14:38:16,361 easyblock.py:3872 INFO Starting ready step
	== 2023-03-28 14:38:16,361 easyconfig.py:1688 INFO Generating template values...
	== 2023-03-28 14:38:16,361 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', builddir='/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0', github_account='trim_galore', installdir='/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
	== 2023-03-28 14:38:16,361 easyblock.py:3880 INFO Running method check_readiness_step part of step ready
	== 2023-03-28 14:38:16,369 run.py:236 INFO running cmd: ulimit -u
	== 2023-03-28 14:38:16,378 easyblock.py:2196 INFO Setting parallelism: 60
	== 2023-03-28 14:38:16,447 easyblock.py:2248 WARNING Loaded modules detected: ['2023.01', 'StdEnv', 'EasyBuild/4.7.0']
	== 2023-03-28 14:38:16,449 easyblock.py:3880 INFO Running method make_builddir part of step ready
	== 2023-03-28 14:38:16,451 filetools.py:1918 INFO Creating directory /home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0 (parents: True, set_gid: False, sticky: False)
	== 2023-03-28 14:38:16,455 easyblock.py:3880 INFO Running method reset_env part of step ready
	== 2023-03-28 14:38:16,456 easyblock.py:3880 INFO Running method handle_iterate_opts part of step ready
	== 2023-03-28 14:38:16,456 easyconfig.py:1688 INFO Generating template values...
	== 2023-03-28 14:38:16,457 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', builddir='/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0', github_account='trim_galore', installdir='/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', parallel='60', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
	== 2023-03-28 14:38:16,457 build_log.py:267 INFO unpacking...
	== 2023-03-28 14:38:16,458 easyblock.py:3872 INFO Starting source step
	== 2023-03-28 14:38:16,458 easyconfig.py:1688 INFO Generating template values...
	== 2023-03-28 14:38:16,458 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', builddir='/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0', github_account='trim_galore', installdir='/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', parallel='60', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
	== 2023-03-28 14:38:16,459 easyblock.py:3880 INFO Running method checksum_step part of step source
	== 2023-03-28 14:38:16,531 easyblock.py:2405 INFO Checksum verification for /home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz using 3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017 passed.
	== 2023-03-28 14:38:16,532 easyblock.py:3880 INFO Running method extract_step part of step source
	== 2023-03-28 14:38:16,532 easyblock.py:2512 INFO Unpacking source 0.6.10.tar.gz
	== 2023-03-28 14:38:16,533 run.py:236 INFO running cmd: tar xzf /home1/p251204/.local/easybuild/sources/t/Trim_Galore/0.6.10.tar.gz
	== 2023-03-28 14:38:16,987 build_log.py:267 INFO patching...
	== 2023-03-28 14:38:16,987 easyblock.py:3872 INFO Starting patch step
	== 2023-03-28 14:38:16,988 easyconfig.py:1688 INFO Generating template values...
	== 2023-03-28 14:38:16,989 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', builddir='/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0', github_account='trim_galore', installdir='/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', parallel='60', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
	== 2023-03-28 14:38:16,989 easyblock.py:3880 INFO Running method patch_step part of step patch
	== 2023-03-28 14:38:16,989 build_log.py:267 INFO preparing...
	== 2023-03-28 14:38:16,989 easyblock.py:3872 INFO Starting prepare step
	== 2023-03-28 14:38:16,990 easyconfig.py:1688 INFO Generating template values...
	== 2023-03-28 14:38:16,990 easyconfig.py:1707 INFO Template values: arch='x86_64', bitbucket_account='trim_galore', builddir='/home1/p251204/.local/easybuild/build/Trim_Galore/0.6.10/GCCcore-11.3.0', github_account='trim_galore', installdir='/home1/p251204/.local/easybuild/software/Trim_Galore/0.6.10-GCCcore-11.3.0', javamajver='11', javashortver='11', javaver='11', module_name='Trim_Galore/0.6.10-GCCcore-11.3.0', name='Trim_Galore', nameletter='T', nameletterlower='t', namelower='trim_galore', parallel='60', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.1', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='GCCcore', toolchain_version='11.3.0', version='0.6.10', version_major='0', version_major_minor='0.6', version_minor='6', versionprefix='', versionsuffix=''
	== 2023-03-28 14:38:16,991 easyblock.py:3880 INFO Running method prepare_step part of step prepare
	== 2023-03-28 14:38:16,993 modules.py:628 INFO Checking whether Python/3.10.4-GCCcore-11.3.0 exists...
	== 2023-03-28 14:38:16,993 modules.py:633 INFO Module Python/3.10.4-GCCcore-11.3.0 exists (found in list of available modules)
	== 2023-03-28 14:38:16,993 modules.py:656 INFO Result for existence check of Python/3.10.4-GCCcore-11.3.0 module: True
	== 2023-03-28 14:38:16,993 modules.py:628 INFO Checking whether Java/11 exists...
	== 2023-03-28 14:38:16,993 modules.py:633 INFO Module Java/11 exists (found in list of available modules)
	== 2023-03-28 14:38:16,993 modules.py:656 INFO Result for existence check of Java/11 module: True
	== 2023-03-28 14:38:16,993 modules.py:628 INFO Checking whether pigz/2.7-GCCcore-11.3.0 exists...
	== 2023-03-28 14:38:16,993 modules.py:636 INFO Module pigz/2.7-GCCcore-11.3.0 not found in list of available modules, checking via 'module show'...
	== 2023-03-28 14:38:17,200 modules.py:649 INFO Module pigz/2.7-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper
	== 2023-03-28 14:38:17,202 modules.py:656 INFO Result for existence check of pigz/2.7-GCCcore-11.3.0 module: False
	== 2023-03-28 14:38:17,202 modules.py:628 INFO Checking whether Perl/5.34.1-GCCcore-11.3.0 exists...
	== 2023-03-28 14:38:17,202 modules.py:633 INFO Module Perl/5.34.1-GCCcore-11.3.0 exists (found in list of available modules)
	== 2023-03-28 14:38:17,203 modules.py:656 INFO Result for existence check of Perl/5.34.1-GCCcore-11.3.0 module: True
	== 2023-03-28 14:38:17,203 modules.py:628 INFO Checking whether cutadapt/4.2-GCCcore-11.3.0 exists...
	== 2023-03-28 14:38:17,203 modules.py:636 INFO Module cutadapt/4.2-GCCcore-11.3.0 not found in list of available modules, checking via 'module show'...
	== 2023-03-28 14:38:17,445 modules.py:649 INFO Module cutadapt/4.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper
	== 2023-03-28 14:38:17,448 modules.py:656 INFO Result for existence check of cutadapt/4.2-GCCcore-11.3.0 module: False
	== 2023-03-28 14:38:17,449 modules.py:628 INFO Checking whether FastQC/0.11.9-Java-11 exists...
	== 2023-03-28 14:38:17,449 modules.py:636 INFO Module FastQC/0.11.9-Java-11 not found in list of available modules, checking via 'module show'...
	== 2023-03-28 14:38:17,680 modules.py:649 INFO Module FastQC/0.11.9-Java-11 not found via module avail/show, checking whether it is a wrapper
	== 2023-03-28 14:38:17,689 modules.py:656 INFO Result for existence check of FastQC/0.11.9-Java-11 module: False
	== 2023-03-28 14:38:19,224 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): Missing modules for dependencies (use --robot?): pigz/2.7-GCCcore-11.3.0, cutadapt/4.2-GCCcore-11.3.0, FastQC/0.11.9-Java-11 (at easybuild/tools/toolchain/toolchain.py:559 in _check_dependencies)
	== 2023-03-28 14:38:19,226 build_log.py:267 INFO ... (took 2 secs)
	== 2023-03-28 14:38:19,226 filetools.py:2019 INFO Removing lock /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock...
	== 2023-03-28 14:38:19,230 filetools.py:384 INFO Path /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock successfully removed.
	== 2023-03-28 14:38:19,230 filetools.py:2023 INFO Lock removed: /home1/p251204/.local/easybuild/software/.locks/_home1_p251204_.local_easybuild_software_Trim_Galore_0.6.10-GCCcore-11.3.0.lock
	== 2023-03-28 14:38:19,230 easyblock.py:4203 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): pigz/2.7-GCCcore-11.3.0, cutadapt/4.2-GCCcore-11.3.0, FastQC/0.11.9-Java-11
	== 2023-03-28 14:38:19,230 easyblock.py:328 INFO Closing log for application name Trim_Galore version 0.6.10