bedroge/AmberTools-22.3-foss-2021b_partial.log

## AmberTools-22.3-foss-2021b_partial.log
== 2022-09-02 08:18:55,637 easyblock.py:793 INFO Found file AmberTools-20_fix_xblas_missing_make_dependency.patch at /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_fix_xblas_missing_make_dependency.patch
== 2022-09-02 08:18:55,637 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.6.0/bin/eb
== 2022-09-02 08:18:55,637 tools.py:285 INFO Also considering installation prefix /software/software/EasyBuild/4.6.0 (determined via path to 'eb' script)...
== 2022-09-02 08:18:55,638 easyblock.py:793 INFO Found file AmberTools-21_CMake-FlexiBLAS.patch at /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_CMake-FlexiBLAS.patch
== 2022-09-02 08:18:55,638 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.6.0/bin/eb
== 2022-09-02 08:18:55,638 tools.py:285 INFO Also considering installation prefix /software/software/EasyBuild/4.6.0 (determined via path to 'eb' script)...
== 2022-09-02 08:18:55,638 easyblock.py:793 INFO Found file AmberTools-21_fix_DGESVD_workspace_query.patch at /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_DGESVD_workspace_query.patch
== 2022-09-02 08:18:55,638 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.6.0/bin/eb
== 2022-09-02 08:18:55,638 tools.py:285 INFO Also considering installation prefix /software/software/EasyBuild/4.6.0 (determined via path to 'eb' script)...
== 2022-09-02 08:18:55,639 easyblock.py:793 INFO Found file AmberTools-21_fix_incorrect_dvout_call.patch at /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_incorrect_dvout_call.patch
== 2022-09-02 08:18:55,639 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.6.0/bin/eb
== 2022-09-02 08:18:55,639 tools.py:285 INFO Also considering installation prefix /software/software/EasyBuild/4.6.0 (determined via path to 'eb' script)...
== 2022-09-02 08:18:55,639 easyblock.py:793 INFO Found file AmberTools-21_fix_incorrect_mexit_calls.patch at /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_incorrect_mexit_calls.patch
== 2022-09-02 08:18:55,639 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.6.0/bin/eb
== 2022-09-02 08:18:55,639 tools.py:285 INFO Also considering installation prefix /software/software/EasyBuild/4.6.0 (determined via path to 'eb' script)...
== 2022-09-02 08:18:55,640 easyblock.py:793 INFO Found file AmberTools-21_fix_more_blas_argument_problems.patch at /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_more_blas_argument_problems.patch
== 2022-09-02 08:18:55,640 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.6.0/bin/eb
== 2022-09-02 08:18:55,640 tools.py:285 INFO Also considering installation prefix /software/software/EasyBuild/4.6.0 (determined via path to 'eb' script)...
== 2022-09-02 08:18:55,640 easyblock.py:793 INFO Found file AmberTools-21_fix_multiple_definition.patch at /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_multiple_definition.patch
== 2022-09-02 08:18:55,640 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.6.0/bin/eb
== 2022-09-02 08:18:55,640 tools.py:285 INFO Also considering installation prefix /software/software/EasyBuild/4.6.0 (determined via path to 'eb' script)...
== 2022-09-02 08:18:55,641 easyblock.py:793 INFO Found file AmberTools-21_fix_potential_use_before_init.patch at /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_potential_use_before_init.patch
== 2022-09-02 08:18:55,641 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.6.0/bin/eb
== 2022-09-02 08:18:55,641 tools.py:285 INFO Also considering installation prefix /software/software/EasyBuild/4.6.0 (determined via path to 'eb' script)...
== 2022-09-02 08:18:55,641 easyblock.py:793 INFO Found file AmberTools-21_fix_rism_argument_mismatch.patch at /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_rism_argument_mismatch.patch
== 2022-09-02 08:18:55,641 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.6.0/bin/eb
== 2022-09-02 08:18:55,641 tools.py:285 INFO Also considering installation prefix /software/software/EasyBuild/4.6.0 (determined via path to 'eb' script)...
== 2022-09-02 08:18:55,642 easyblock.py:793 INFO Found file AmberTools-21_fix_xray_fftpack_arg_mismatch.patch at /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_xray_fftpack_arg_mismatch.patch
== 2022-09-02 08:18:55,642 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.6.0/bin/eb
== 2022-09-02 08:18:55,642 tools.py:285 INFO Also considering installation prefix /software/software/EasyBuild/4.6.0 (determined via path to 'eb' script)...
== 2022-09-02 08:18:55,642 easyblock.py:793 INFO Found file AmberTools-22_fix_test_missing_cuda_dir.patch at /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-22_fix_test_missing_cuda_dir.patch
== 2022-09-02 08:18:55,642 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.6.0/bin/eb
== 2022-09-02 08:18:55,642 tools.py:285 INFO Also considering installation prefix /software/software/EasyBuild/4.6.0 (determined via path to 'eb' script)...
== 2022-09-02 08:18:55,643 easyblock.py:793 INFO Found file AmberTools-22_fix_missing_error_check_on_test_run.patch at /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-22_fix_missing_error_check_on_test_run.patch
== 2022-09-02 08:18:55,643 easyblock.py:492 INFO Added patches: [{'name': 'AmberTools-20_cmake-locate-netcdf.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_cmake-locate-netcdf.patch', 'checksum': '473e07c53b6f641d96d333974a6af2e03413fecef79f879d3fdecf7fecaab4d0'}, {'name': 'AmberTools-20_fix_missing_MPI_LIBRARY_error.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_fix_missing_MPI_LIBRARY_error.patch', 'checksum': '0b89a0624167bc23876bcdefcb1055f591e38e3bd559a71d5749e342bd311acc'}, {'name': 'AmberTools-20_fix_xblas_missing_make_dependency.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_fix_xblas_missing_make_dependency.patch', 'checksum': 'ff25e91fdc72347a778c3837b581e174d6a8c71efa5b46e11391b18bca84fd65'}, {'name': 'AmberTools-21_CMake-FlexiBLAS.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_CMake-FlexiBLAS.patch', 'checksum': '9543812c24c4b7842f64f1f8abaf2c92b5c4c0fadcdbd9811e76b81a778f0d36'}, {'name': 'AmberTools-21_fix_DGESVD_workspace_query.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_DGESVD_workspace_query.patch', 'checksum': '560c73e9d8bd159c609098c63a0256cdee78f49e524d06ea94d16d3146f69bcd'}, {'name': 'AmberTools-21_fix_incorrect_dvout_call.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_incorrect_dvout_call.patch', 'checksum': '1054d4007f5c79126a41582e1e80514267cf406416ed6c471574cd708b16319b'}, {'name': 'AmberTools-21_fix_incorrect_mexit_calls.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_incorrect_mexit_calls.patch', 'checksum': 'd1de8c596119dcedbb809515816f0c98762306c469e9caf2c0b878d9b0a1095f'}, {'name': 'AmberTools-21_fix_more_blas_argument_problems.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_more_blas_argument_problems.patch', 'checksum': 'c6279b57752239184b942d37f760749494ae0eff95236f3368c76ac0d2726a7c'}, {'name': 'AmberTools-21_fix_multiple_definition.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_multiple_definition.patch', 'checksum': 'ce30eeaba9feea53aa115e4b0dcc5be943b8a55abe322480c807ca7ea963d83b'}, {'name': 'AmberTools-21_fix_potential_use_before_init.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_potential_use_before_init.patch', 'checksum': '377e645b5bd2c91ebb4d0b6fbca0407a94289e5ddc5b1e7ed0cb0b0724ad2139'}, {'name': 'AmberTools-21_fix_rism_argument_mismatch.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_rism_argument_mismatch.patch', 'checksum': '14255e5739cec39303df570f06820c7532f7395e1b73b1e4104377984e2c9fc1'}, {'name': 'AmberTools-21_fix_xray_fftpack_arg_mismatch.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_xray_fftpack_arg_mismatch.patch', 'checksum': '99c954e693659efc2a1d121f91510f56408006f0751d91595f45a34b03364e2f'}, {'name': 'AmberTools-22_fix_test_missing_cuda_dir.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-22_fix_test_missing_cuda_dir.patch', 'checksum': 'fb1ab74314d7816169bb9f3f527b78085654aae2825c52cebf50a5760401b737'}, {'name': 'AmberTools-22_fix_missing_error_check_on_test_run.patch', 'postinstall': False, 'path': '/dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-22_fix_missing_error_check_on_test_run.patch', 'checksum': 'a86eee60bd65c16a849469e303cb99dfc207cbadd2ae9e70b9ff580ced785475'}]
== 2022-09-02 08:18:56,628 easyblock.py:2292 INFO md5 checksum for /apps/.local/sources/a/AmberTools/AmberTools22.tar.bz2: 769e13da80489db8c046c45d62d40e9a
== 2022-09-02 08:18:58,052 easyblock.py:2292 INFO sha256 checksum for /apps/.local/sources/a/AmberTools/AmberTools22.tar.bz2: 1571d4e0f7d45b2a71dce5999fa875aea8c90ee219eb218d7916bf30ea229121
== 2022-09-02 08:18:58,053 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_cmake-locate-netcdf.patch: 3a8564e29742a4888379c3d9b43496ea
== 2022-09-02 08:18:58,053 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_cmake-locate-netcdf.patch: 473e07c53b6f641d96d333974a6af2e03413fecef79f879d3fdecf7fecaab4d0
== 2022-09-02 08:18:58,053 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_fix_missing_MPI_LIBRARY_error.patch: 01222aa6586d37c9c384a2442a2ab5e6
== 2022-09-02 08:18:58,053 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_fix_missing_MPI_LIBRARY_error.patch: 0b89a0624167bc23876bcdefcb1055f591e38e3bd559a71d5749e342bd311acc
== 2022-09-02 08:18:58,053 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_fix_xblas_missing_make_dependency.patch: 123957d2a1d120f1e658b437723578a9
== 2022-09-02 08:18:58,053 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_fix_xblas_missing_make_dependency.patch: ff25e91fdc72347a778c3837b581e174d6a8c71efa5b46e11391b18bca84fd65
== 2022-09-02 08:18:58,054 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_CMake-FlexiBLAS.patch: d9f40047e9cad543d80c790350682b7e
== 2022-09-02 08:18:58,054 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_CMake-FlexiBLAS.patch: 9543812c24c4b7842f64f1f8abaf2c92b5c4c0fadcdbd9811e76b81a778f0d36
== 2022-09-02 08:18:58,054 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_DGESVD_workspace_query.patch: 141db77da0d67886520a198bf5433f47
== 2022-09-02 08:18:58,054 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_DGESVD_workspace_query.patch: 560c73e9d8bd159c609098c63a0256cdee78f49e524d06ea94d16d3146f69bcd
== 2022-09-02 08:18:58,054 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_incorrect_dvout_call.patch: 51ac795bd0835e3e7eaf2f0e2fb42bc8
== 2022-09-02 08:18:58,054 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_incorrect_dvout_call.patch: 1054d4007f5c79126a41582e1e80514267cf406416ed6c471574cd708b16319b
== 2022-09-02 08:18:58,054 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_incorrect_mexit_calls.patch: a369e1f83446c48e32be3e91fcb22c51
== 2022-09-02 08:18:58,055 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_incorrect_mexit_calls.patch: d1de8c596119dcedbb809515816f0c98762306c469e9caf2c0b878d9b0a1095f
== 2022-09-02 08:18:58,055 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_more_blas_argument_problems.patch: 548bfb87b9cac7610297b8675513563e
== 2022-09-02 08:18:58,055 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_more_blas_argument_problems.patch: c6279b57752239184b942d37f760749494ae0eff95236f3368c76ac0d2726a7c
== 2022-09-02 08:18:58,055 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_multiple_definition.patch: 11cb97ac15492dcd1aa06c581e24914c
== 2022-09-02 08:18:58,055 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_multiple_definition.patch: ce30eeaba9feea53aa115e4b0dcc5be943b8a55abe322480c807ca7ea963d83b
== 2022-09-02 08:18:58,055 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_potential_use_before_init.patch: 24f76c937c841b0418269841d650cfc3
== 2022-09-02 08:18:58,055 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_potential_use_before_init.patch: 377e645b5bd2c91ebb4d0b6fbca0407a94289e5ddc5b1e7ed0cb0b0724ad2139
== 2022-09-02 08:18:58,055 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_rism_argument_mismatch.patch: a632a3d7dad444608334276bf3d534bf
== 2022-09-02 08:18:58,056 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_rism_argument_mismatch.patch: 14255e5739cec39303df570f06820c7532f7395e1b73b1e4104377984e2c9fc1
== 2022-09-02 08:18:58,056 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_xray_fftpack_arg_mismatch.patch: 371a571f1d1a120444b4dacb7f312f49
== 2022-09-02 08:18:58,056 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_xray_fftpack_arg_mismatch.patch: 99c954e693659efc2a1d121f91510f56408006f0751d91595f45a34b03364e2f
== 2022-09-02 08:18:58,056 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-22_fix_test_missing_cuda_dir.patch: 8093af3bf2d284516d0c8909d4764fd5
== 2022-09-02 08:18:58,056 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-22_fix_test_missing_cuda_dir.patch: fb1ab74314d7816169bb9f3f527b78085654aae2825c52cebf50a5760401b737
== 2022-09-02 08:18:58,056 easyblock.py:2292 INFO md5 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-22_fix_missing_error_check_on_test_run.patch: d59a08334bbb04d5314e1dae286ba522
== 2022-09-02 08:18:58,056 easyblock.py:2292 INFO sha256 checksum for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-22_fix_missing_error_check_on_test_run.patch: a86eee60bd65c16a849469e303cb99dfc207cbadd2ae9e70b9ff580ced785475
== 2022-09-02 08:18:58,057 easyblock.py:2327 INFO Checking dirs that need to be created: ['/data/f115261/easybuildinstall/software/AmberTools/22.3-foss-2021b', '/data/f115261/easybuildinstall/modules/all/AmberTools', '/data/f115261/easybuildinstall/modules/chem/AmberTools']
== 2022-09-02 08:18:58,059 configuremake.py:95 INFO config.guess version: 2018-08-29 (last updated: 2022-08-31T15:37:05, SHA256 checksum: c02eb9cc55c86cfd1e9a794e548d25db5c9539e7b2154beb649bc6e2cbffc74c)
== 2022-09-02 08:18:58,059 configuremake.py:150 INFO Found config.guess at /apps/.local/sources/generic/eb_v4.6.0/ConfigureMake/config.guess
== 2022-09-02 08:18:58,059 build_log.py:265 INFO ... (took 2 secs)
== 2022-09-02 08:18:58,062 build_log.py:265 INFO creating build dir, resetting environment...
== 2022-09-02 08:18:58,065 easyblock.py:3767 INFO Starting ready step
== 2022-09-02 08:18:58,065 easyconfig.py:1686 INFO Generating template values...
== 2022-09-02 08:18:58,066 mpi.py:120 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2022-09-02 08:18:58,066 mpi.py:305 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2022-09-02 08:18:58,066 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='ambertools', builddir='/dev/shm/f115261/AmberTools/22.3/foss-2021b', cuda_cc_semicolon_sep='3.5;6.1;7.0', cuda_cc_space_sep='3.5 6.1 7.0', cuda_compute_capabilities='3.5,6.1,7.0', cuda_sm_comma_sep='sm_35,sm_61,sm_70', cuda_sm_space_sep='sm_35 sm_61 sm_70', github_account='ambertools', installdir='/data/f115261/easybuildinstall/software/AmberTools/22.3-foss-2021b', module_name='AmberTools/22.3-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='AmberTools', nameletter='A', nameletterlower='a', namelower='ambertools', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.0', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='22.3', version_major='22', version_major_minor='22.3', version_minor='3', versionprefix='', versionsuffix=''
== 2022-09-02 08:18:58,066 easyblock.py:3775 INFO Running method check_readiness_step part of step ready
== 2022-09-02 08:18:58,071 run.py:233 INFO running cmd: ulimit -u
== 2022-09-02 08:18:58,079 easyblock.py:2136 INFO Setting parallelism: 24
== 2022-09-02 08:18:58,170 easyblock.py:2188 WARNING Loaded modules detected: ['EasyBuild/4.6.0']
== 2022-09-02 08:18:58,171 easyblock.py:3775 INFO Running method make_builddir part of step ready
== 2022-09-02 08:18:58,171 easyblock.py:1064 INFO Found old directory /dev/shm/f115261/AmberTools/22.3/foss-2021b
== 2022-09-02 08:18:58,619 filetools.py:382 INFO Path /dev/shm/f115261/AmberTools/22.3/foss-2021b successfully removed.
== 2022-09-02 08:18:58,619 easyblock.py:1072 INFO Removed old directory /dev/shm/f115261/AmberTools/22.3/foss-2021b
== 2022-09-02 08:18:58,619 filetools.py:1913 INFO Creating directory /dev/shm/f115261/AmberTools/22.3/foss-2021b (parents: True, set_gid: False, sticky: False)
== 2022-09-02 08:18:58,619 easyblock.py:3775 INFO Running method reset_env part of step ready
== 2022-09-02 08:18:58,620 easyblock.py:3775 INFO Running method handle_iterate_opts part of step ready
== 2022-09-02 08:18:58,620 easyconfig.py:1686 INFO Generating template values...
== 2022-09-02 08:18:58,620 mpi.py:120 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2022-09-02 08:18:58,621 mpi.py:305 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2022-09-02 08:18:58,621 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='ambertools', builddir='/dev/shm/f115261/AmberTools/22.3/foss-2021b', cuda_cc_semicolon_sep='3.5;6.1;7.0', cuda_cc_space_sep='3.5 6.1 7.0', cuda_compute_capabilities='3.5,6.1,7.0', cuda_sm_comma_sep='sm_35,sm_61,sm_70', cuda_sm_space_sep='sm_35 sm_61 sm_70', github_account='ambertools', installdir='/data/f115261/easybuildinstall/software/AmberTools/22.3-foss-2021b', module_name='AmberTools/22.3-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='AmberTools', nameletter='A', nameletterlower='a', namelower='ambertools', parallel='24', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.0', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='22.3', version_major='22', version_major_minor='22.3', version_minor='3', versionprefix='', versionsuffix=''
== 2022-09-02 08:18:58,621 build_log.py:265 INFO unpacking...
== 2022-09-02 08:18:58,625 easyblock.py:3767 INFO Starting source step
== 2022-09-02 08:18:58,625 easyconfig.py:1686 INFO Generating template values...
== 2022-09-02 08:18:58,625 mpi.py:120 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2022-09-02 08:18:58,625 mpi.py:305 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2022-09-02 08:18:58,626 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='ambertools', builddir='/dev/shm/f115261/AmberTools/22.3/foss-2021b', cuda_cc_semicolon_sep='3.5;6.1;7.0', cuda_cc_space_sep='3.5 6.1 7.0', cuda_compute_capabilities='3.5,6.1,7.0', cuda_sm_comma_sep='sm_35,sm_61,sm_70', cuda_sm_space_sep='sm_35 sm_61 sm_70', github_account='ambertools', installdir='/data/f115261/easybuildinstall/software/AmberTools/22.3-foss-2021b', module_name='AmberTools/22.3-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='AmberTools', nameletter='A', nameletterlower='a', namelower='ambertools', parallel='24', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.0', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='22.3', version_major='22', version_major_minor='22.3', version_minor='3', versionprefix='', versionsuffix=''
== 2022-09-02 08:18:58,626 easyblock.py:3775 INFO Running method checksum_step part of step source
== 2022-09-02 08:19:00,059 easyblock.py:2345 INFO Checksum verification for /apps/.local/sources/a/AmberTools/AmberTools22.tar.bz2 using 1571d4e0f7d45b2a71dce5999fa875aea8c90ee219eb218d7916bf30ea229121 passed.
== 2022-09-02 08:19:00,060 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_cmake-locate-netcdf.patch using 473e07c53b6f641d96d333974a6af2e03413fecef79f879d3fdecf7fecaab4d0 passed.
== 2022-09-02 08:19:00,060 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_fix_missing_MPI_LIBRARY_error.patch using 0b89a0624167bc23876bcdefcb1055f591e38e3bd559a71d5749e342bd311acc passed.
== 2022-09-02 08:19:00,060 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_fix_xblas_missing_make_dependency.patch using ff25e91fdc72347a778c3837b581e174d6a8c71efa5b46e11391b18bca84fd65 passed.
== 2022-09-02 08:19:00,060 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_CMake-FlexiBLAS.patch using 9543812c24c4b7842f64f1f8abaf2c92b5c4c0fadcdbd9811e76b81a778f0d36 passed.
== 2022-09-02 08:19:00,060 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_DGESVD_workspace_query.patch using 560c73e9d8bd159c609098c63a0256cdee78f49e524d06ea94d16d3146f69bcd passed.
== 2022-09-02 08:19:00,061 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_incorrect_dvout_call.patch using 1054d4007f5c79126a41582e1e80514267cf406416ed6c471574cd708b16319b passed.
== 2022-09-02 08:19:00,061 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_incorrect_mexit_calls.patch using d1de8c596119dcedbb809515816f0c98762306c469e9caf2c0b878d9b0a1095f passed.
== 2022-09-02 08:19:00,061 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_more_blas_argument_problems.patch using c6279b57752239184b942d37f760749494ae0eff95236f3368c76ac0d2726a7c passed.
== 2022-09-02 08:19:00,061 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_multiple_definition.patch using ce30eeaba9feea53aa115e4b0dcc5be943b8a55abe322480c807ca7ea963d83b passed.
== 2022-09-02 08:19:00,061 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_potential_use_before_init.patch using 377e645b5bd2c91ebb4d0b6fbca0407a94289e5ddc5b1e7ed0cb0b0724ad2139 passed.
== 2022-09-02 08:19:00,061 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_rism_argument_mismatch.patch using 14255e5739cec39303df570f06820c7532f7395e1b73b1e4104377984e2c9fc1 passed.
== 2022-09-02 08:19:00,061 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_xray_fftpack_arg_mismatch.patch using 99c954e693659efc2a1d121f91510f56408006f0751d91595f45a34b03364e2f passed.
== 2022-09-02 08:19:00,061 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-22_fix_test_missing_cuda_dir.patch using fb1ab74314d7816169bb9f3f527b78085654aae2825c52cebf50a5760401b737 passed.
== 2022-09-02 08:19:00,062 easyblock.py:2345 INFO Checksum verification for /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-22_fix_missing_error_check_on_test_run.patch using a86eee60bd65c16a849469e303cb99dfc207cbadd2ae9e70b9ff580ced785475 passed.
== 2022-09-02 08:19:00,062 easyblock.py:3775 INFO Running method extract_step part of step source
== 2022-09-02 08:19:00,062 easyblock.py:2437 INFO Unpacking source AmberTools22.tar.bz2
== 2022-09-02 08:19:00,062 run.py:233 INFO running cmd: tar xjf /apps/.local/sources/a/AmberTools/AmberTools22.tar.bz2  --strip-components=1
== 2022-09-02 08:20:21,069 build_log.py:265 INFO ... (took 1 min 22 secs)
== 2022-09-02 08:20:21,077 build_log.py:265 INFO patching...
== 2022-09-02 08:20:21,082 easyblock.py:3767 INFO Starting patch step
== 2022-09-02 08:20:21,083 easyconfig.py:1686 INFO Generating template values...
== 2022-09-02 08:20:21,084 mpi.py:120 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2022-09-02 08:20:21,084 mpi.py:305 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2022-09-02 08:20:21,085 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='ambertools', builddir='/dev/shm/f115261/AmberTools/22.3/foss-2021b', cuda_cc_semicolon_sep='3.5;6.1;7.0', cuda_cc_space_sep='3.5 6.1 7.0', cuda_compute_capabilities='3.5,6.1,7.0', cuda_sm_comma_sep='sm_35,sm_61,sm_70', cuda_sm_space_sep='sm_35 sm_61 sm_70', github_account='ambertools', installdir='/data/f115261/easybuildinstall/software/AmberTools/22.3-foss-2021b', module_name='AmberTools/22.3-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='AmberTools', nameletter='A', nameletterlower='a', namelower='ambertools', parallel='24', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.0', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='22.3', version_major='22', version_major_minor='22.3', version_minor='3', versionprefix='', versionsuffix=''
== 2022-09-02 08:20:21,085 easyblock.py:3775 INFO Running method patch_step part of step patch
== 2022-09-02 08:20:21,090 filetools.py:525 INFO Command python found at /usr/bin/python
== 2022-09-02 08:20:21,091 run.py:233 INFO running cmd: python ./update_amber --update-to AmberTools/3
== 2022-09-02 08:20:26,199 run.py:623 INFO cmd "python ./update_amber --update-to AmberTools/3" exited with exit code 0 and output:
Preparing to apply specific updates... please wait.
Downloading updates for AmberTools 22
Downloading AmberTools 22/update.1 (1.91 KB)
Applying AmberTools 22/update.1
Downloading AmberTools 22/update.2 (2.37 KB)
Applying AmberTools 22/update.2
Downloading AmberTools 22/update.3 (351.73 KB)
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Applying AmberTools 22/update.3

NOTE: update_amber only updates the raw source code! You must recompile if you want
      any changes to take effect!


== 2022-09-02 08:20:26,203 easyblock.py:2455 INFO Applying patch AmberTools-20_cmake-locate-netcdf.patch
== 2022-09-02 08:20:26,206 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_cmake-locate-netcdf.patch
== 2022-09-02 08:20:26,218 easyblock.py:2455 INFO Applying patch AmberTools-20_fix_missing_MPI_LIBRARY_error.patch
== 2022-09-02 08:20:26,220 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_fix_missing_MPI_LIBRARY_error.patch
== 2022-09-02 08:20:26,230 easyblock.py:2455 INFO Applying patch AmberTools-20_fix_xblas_missing_make_dependency.patch
== 2022-09-02 08:20:26,232 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-20_fix_xblas_missing_make_dependency.patch
== 2022-09-02 08:20:26,242 easyblock.py:2455 INFO Applying patch AmberTools-21_CMake-FlexiBLAS.patch
== 2022-09-02 08:20:26,245 run.py:233 INFO running cmd: patch -p0 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_CMake-FlexiBLAS.patch
== 2022-09-02 08:20:26,256 easyblock.py:2455 INFO Applying patch AmberTools-21_fix_DGESVD_workspace_query.patch
== 2022-09-02 08:20:26,257 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_DGESVD_workspace_query.patch
== 2022-09-02 08:20:26,268 easyblock.py:2455 INFO Applying patch AmberTools-21_fix_incorrect_dvout_call.patch
== 2022-09-02 08:20:26,269 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_incorrect_dvout_call.patch
== 2022-09-02 08:20:26,280 easyblock.py:2455 INFO Applying patch AmberTools-21_fix_incorrect_mexit_calls.patch
== 2022-09-02 08:20:26,281 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_incorrect_mexit_calls.patch
== 2022-09-02 08:20:26,291 easyblock.py:2455 INFO Applying patch AmberTools-21_fix_more_blas_argument_problems.patch
== 2022-09-02 08:20:26,293 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_more_blas_argument_problems.patch
== 2022-09-02 08:20:26,302 easyblock.py:2455 INFO Applying patch AmberTools-21_fix_multiple_definition.patch
== 2022-09-02 08:20:26,303 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_multiple_definition.patch
== 2022-09-02 08:20:26,312 easyblock.py:2455 INFO Applying patch AmberTools-21_fix_potential_use_before_init.patch
== 2022-09-02 08:20:26,313 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_potential_use_before_init.patch
== 2022-09-02 08:20:26,322 easyblock.py:2455 INFO Applying patch AmberTools-21_fix_rism_argument_mismatch.patch
== 2022-09-02 08:20:26,323 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_rism_argument_mismatch.patch
== 2022-09-02 08:20:26,331 easyblock.py:2455 INFO Applying patch AmberTools-21_fix_xray_fftpack_arg_mismatch.patch
== 2022-09-02 08:20:26,331 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-21_fix_xray_fftpack_arg_mismatch.patch
== 2022-09-02 08:20:26,339 easyblock.py:2455 INFO Applying patch AmberTools-22_fix_test_missing_cuda_dir.patch
== 2022-09-02 08:20:26,340 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-22_fix_test_missing_cuda_dir.patch
== 2022-09-02 08:20:26,350 easyblock.py:2455 INFO Applying patch AmberTools-22_fix_missing_error_check_on_test_run.patch
== 2022-09-02 08:20:26,351 run.py:233 INFO running cmd: patch -p1 -i /dev/shm/f115261/eb-cbzroas8/files_pr16136/a/AmberTools/AmberTools-22_fix_missing_error_check_on_test_run.patch
== 2022-09-02 08:20:26,359 build_log.py:265 INFO ... (took 5 secs)
== 2022-09-02 08:20:26,363 build_log.py:265 INFO preparing...
== 2022-09-02 08:20:26,366 easyblock.py:3767 INFO Starting prepare step
== 2022-09-02 08:20:26,366 easyconfig.py:1686 INFO Generating template values...
== 2022-09-02 08:20:26,366 mpi.py:120 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2022-09-02 08:20:26,366 mpi.py:305 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2022-09-02 08:20:26,367 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='ambertools', builddir='/dev/shm/f115261/AmberTools/22.3/foss-2021b', cuda_cc_semicolon_sep='3.5;6.1;7.0', cuda_cc_space_sep='3.5 6.1 7.0', cuda_compute_capabilities='3.5,6.1,7.0', cuda_sm_comma_sep='sm_35,sm_61,sm_70', cuda_sm_space_sep='sm_35 sm_61 sm_70', github_account='ambertools', installdir='/data/f115261/easybuildinstall/software/AmberTools/22.3-foss-2021b', module_name='AmberTools/22.3-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='AmberTools', nameletter='A', nameletterlower='a', namelower='ambertools', parallel='24', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.0', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='22.3', version_major='22', version_major_minor='22.3', version_minor='3', versionprefix='', versionsuffix=''
== 2022-09-02 08:20:26,367 easyblock.py:3775 INFO Running method prepare_step part of step prepare
== 2022-09-02 08:20:26,378 modules.py:626 INFO Checking whether CMake/3.21.1-GCCcore-11.2.0 exists...
== 2022-09-02 08:20:26,378 modules.py:631 INFO Module CMake/3.21.1-GCCcore-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,378 modules.py:654 INFO Result for existence check of CMake/3.21.1-GCCcore-11.2.0 module: True
== 2022-09-02 08:20:26,378 modules.py:626 INFO Checking whether pkg-config/0.29.2-GCCcore-11.2.0 exists...
== 2022-09-02 08:20:26,378 modules.py:631 INFO Module pkg-config/0.29.2-GCCcore-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,378 modules.py:654 INFO Result for existence check of pkg-config/0.29.2-GCCcore-11.2.0 module: True
== 2022-09-02 08:20:26,378 modules.py:626 INFO Checking whether Bison/3.7.6-GCCcore-11.2.0 exists...
== 2022-09-02 08:20:26,379 modules.py:631 INFO Module Bison/3.7.6-GCCcore-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,379 modules.py:654 INFO Result for existence check of Bison/3.7.6-GCCcore-11.2.0 module: True
== 2022-09-02 08:20:26,379 modules.py:626 INFO Checking whether flex/2.6.4-GCCcore-11.2.0 exists...
== 2022-09-02 08:20:26,379 modules.py:631 INFO Module flex/2.6.4-GCCcore-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,379 modules.py:654 INFO Result for existence check of flex/2.6.4-GCCcore-11.2.0 module: True
== 2022-09-02 08:20:26,379 modules.py:626 INFO Checking whether make/4.3-GCCcore-11.2.0 exists...
== 2022-09-02 08:20:26,379 modules.py:631 INFO Module make/4.3-GCCcore-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,379 modules.py:654 INFO Result for existence check of make/4.3-GCCcore-11.2.0 module: True
== 2022-09-02 08:20:26,379 modules.py:626 INFO Checking whether zlib/1.2.11-GCCcore-11.2.0 exists...
== 2022-09-02 08:20:26,379 modules.py:631 INFO Module zlib/1.2.11-GCCcore-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,379 modules.py:654 INFO Result for existence check of zlib/1.2.11-GCCcore-11.2.0 module: True
== 2022-09-02 08:20:26,379 modules.py:626 INFO Checking whether bzip2/1.0.8-GCCcore-11.2.0 exists...
== 2022-09-02 08:20:26,380 modules.py:631 INFO Module bzip2/1.0.8-GCCcore-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,380 modules.py:654 INFO Result for existence check of bzip2/1.0.8-GCCcore-11.2.0 module: True
== 2022-09-02 08:20:26,380 modules.py:626 INFO Checking whether Python/3.9.6-GCCcore-11.2.0 exists...
== 2022-09-02 08:20:26,380 modules.py:631 INFO Module Python/3.9.6-GCCcore-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,380 modules.py:654 INFO Result for existence check of Python/3.9.6-GCCcore-11.2.0 module: True
== 2022-09-02 08:20:26,380 modules.py:626 INFO Checking whether SciPy-bundle/2021.10-foss-2021b exists...
== 2022-09-02 08:20:26,380 modules.py:631 INFO Module SciPy-bundle/2021.10-foss-2021b exists (found in list of available modules)
== 2022-09-02 08:20:26,380 modules.py:654 INFO Result for existence check of SciPy-bundle/2021.10-foss-2021b module: True
== 2022-09-02 08:20:26,380 modules.py:626 INFO Checking whether Perl/5.34.0-GCCcore-11.2.0 exists...
== 2022-09-02 08:20:26,380 modules.py:631 INFO Module Perl/5.34.0-GCCcore-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,380 modules.py:654 INFO Result for existence check of Perl/5.34.0-GCCcore-11.2.0 module: True
== 2022-09-02 08:20:26,380 modules.py:626 INFO Checking whether Boost/1.77.0-GCC-11.2.0 exists...
== 2022-09-02 08:20:26,380 modules.py:631 INFO Module Boost/1.77.0-GCC-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,381 modules.py:654 INFO Result for existence check of Boost/1.77.0-GCC-11.2.0 module: True
== 2022-09-02 08:20:26,381 modules.py:626 INFO Checking whether libreadline/8.1-GCCcore-11.2.0 exists...
== 2022-09-02 08:20:26,381 modules.py:631 INFO Module libreadline/8.1-GCCcore-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,381 modules.py:654 INFO Result for existence check of libreadline/8.1-GCCcore-11.2.0 module: True
== 2022-09-02 08:20:26,381 modules.py:626 INFO Checking whether matplotlib/3.4.3-foss-2021b exists...
== 2022-09-02 08:20:26,381 modules.py:631 INFO Module matplotlib/3.4.3-foss-2021b exists (found in list of available modules)
== 2022-09-02 08:20:26,381 modules.py:654 INFO Result for existence check of matplotlib/3.4.3-foss-2021b module: True
== 2022-09-02 08:20:26,381 modules.py:626 INFO Checking whether netCDF/4.8.1-gompi-2021b exists...
== 2022-09-02 08:20:26,381 modules.py:631 INFO Module netCDF/4.8.1-gompi-2021b exists (found in list of available modules)
== 2022-09-02 08:20:26,381 modules.py:654 INFO Result for existence check of netCDF/4.8.1-gompi-2021b module: True
== 2022-09-02 08:20:26,381 modules.py:626 INFO Checking whether netCDF-Fortran/4.5.3-gompi-2021b exists...
== 2022-09-02 08:20:26,381 modules.py:631 INFO Module netCDF-Fortran/4.5.3-gompi-2021b exists (found in list of available modules)
== 2022-09-02 08:20:26,382 modules.py:654 INFO Result for existence check of netCDF-Fortran/4.5.3-gompi-2021b module: True
== 2022-09-02 08:20:26,382 modules.py:626 INFO Checking whether PnetCDF/1.12.3-gompi-2021b exists...
== 2022-09-02 08:20:26,382 modules.py:631 INFO Module PnetCDF/1.12.3-gompi-2021b exists (found in list of available modules)
== 2022-09-02 08:20:26,382 modules.py:654 INFO Result for existence check of PnetCDF/1.12.3-gompi-2021b module: True
== 2022-09-02 08:20:26,382 modules.py:626 INFO Checking whether Tkinter/3.9.6-GCCcore-11.2.0 exists...
== 2022-09-02 08:20:26,382 modules.py:631 INFO Module Tkinter/3.9.6-GCCcore-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,382 modules.py:654 INFO Result for existence check of Tkinter/3.9.6-GCCcore-11.2.0 module: True
== 2022-09-02 08:20:26,382 modules.py:626 INFO Checking whether X11/20210802-GCCcore-11.2.0 exists...
== 2022-09-02 08:20:26,382 modules.py:631 INFO Module X11/20210802-GCCcore-11.2.0 exists (found in list of available modules)
== 2022-09-02 08:20:26,382 modules.py:654 INFO Result for existence check of X11/20210802-GCCcore-11.2.0 module: True
== 2022-09-02 08:20:26,383 modules.py:626 INFO Checking whether foss/2021b exists...
== 2022-09-02 08:20:26,383 modules.py:634 INFO Module foss/2021b not found in list of available modules, checking via 'module show'...
== 2022-09-02 08:20:31,049 modules.py:654 INFO Result for existence check of foss/2021b module: True
== 2022-09-02 08:20:33,864 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/.singularity.d/libs')
== 2022-09-02 08:20:35,942 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/.singularity.d/libs')
== 2022-09-02 08:20:36,956 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/flex/2.6.4-GCCcore-11.2.0/lib:/.singularity.d/libs')
== 2022-09-02 08:20:39,149 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/.singularity.d/libs')
== 2022-09-02 08:20:40,144 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/.singularity.d/libs')
== 2022-09-02 08:20:41,340 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /software/software/Python/3.9.6-GCCcore-11.2.0/lib:/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GMP/6.2.1-GCCcore-11.2.0/lib:/software/software/SQLite/3.36-GCCcore-11.2.0/lib:/software/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/Python/3.9.6-GCCcore-11.2.0/lib:/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GMP/6.2.1-GCCcore-11.2.0/lib:/software/software/SQLite/3.36-GCCcore-11.2.0/lib:/software/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/.singularity.d/libs')
== 2022-09-02 08:20:42,495 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/software/software/Python/3.9.6-GCCcore-11.2.0/lib:/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GMP/6.2.1-GCCcore-11.2.0/lib:/software/software/SQLite/3.36-GCCcore-11.2.0/lib:/software/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/.singularity.d/libs')
== 2022-09-02 08:20:43,549 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /software/software/DB/18.1.40-GCCcore-11.2.0/lib:/software/software/expat/2.4.1-GCCcore-11.2.0/lib:/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/software/software/Python/3.9.6-GCCcore-11.2.0/lib:/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GMP/6.2.1-GCCcore-11.2.0/lib:/software/software/SQLite/3.36-GCCcore-11.2.0/lib:/software/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/DB/18.1.40-GCCcore-11.2.0/lib:/software/software/expat/2.4.1-GCCcore-11.2.0/lib:/.singularity.d/libs')
== 2022-09-02 08:20:44,640 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /software/software/Boost/1.77.0-GCC-11.2.0/lib:/software/software/ICU/69.1-GCCcore-11.2.0/lib:/software/software/DB/18.1.40-GCCcore-11.2.0/lib:/software/software/expat/2.4.1-GCCcore-11.2.0/lib:/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/software/software/Python/3.9.6-GCCcore-11.2.0/lib:/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GMP/6.2.1-GCCcore-11.2.0/lib:/software/software/SQLite/3.36-GCCcore-11.2.0/lib:/software/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/Boost/1.77.0-GCC-11.2.0/lib:/software/software/ICU/69.1-GCCcore-11.2.0/lib:/.singularity.d/libs')
== 2022-09-02 08:20:45,724 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /software/software/Boost/1.77.0-GCC-11.2.0/lib:/software/software/ICU/69.1-GCCcore-11.2.0/lib:/software/software/DB/18.1.40-GCCcore-11.2.0/lib:/software/software/expat/2.4.1-GCCcore-11.2.0/lib:/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/software/software/Python/3.9.6-GCCcore-11.2.0/lib:/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GMP/6.2.1-GCCcore-11.2.0/lib:/software/software/SQLite/3.36-GCCcore-11.2.0/lib:/software/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/.singularity.d/libs')
== 2022-09-02 08:20:47,260 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /software/software/Qhull/2020.2-GCCcore-11.2.0/lib:/software/software/LibTIFF/4.3.0-GCCcore-11.2.0/lib:/software/software/zstd/1.5.0-GCCcore-11.2.0/lib:/software/software/lz4/1.9.3-GCCcore-11.2.0/lib:/software/software/jbigkit/2.1-GCCcore-11.2.0/lib:/software/software/libjpeg-turbo/2.0.6-GCCcore-11.2.0/lib:/software/software/Tk/8.6.11-GCCcore-11.2.0/lib:/software/software/X11/20210802-GCCcore-11.2.0/lib:/software/software/fontconfig/2.13.94-GCCcore-11.2.0/lib:/software/software/util-linux/2.37-GCCcore-11.2.0/lib:/software/software/freetype/2.11.0-GCCcore-11.2.0/lib:/software/software/Brotli/1.0.9-GCCcore-11.2.0/lib:/software/software/libpng/1.6.37-GCCcore-11.2.0/lib:/software/software/Boost/1.77.0-GCC-11.2.0/lib:/software/software/ICU/69.1-GCCcore-11.2.0/lib:/software/software/DB/18.1.40-GCCcore-11.2.0/lib:/software/software/expat/2.4.1-GCCcore-11.2.0/lib:/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/software/software/Python/3.9.6-GCCcore-11.2.0/lib:/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GMP/6.2.1-GCCcore-11.2.0/lib:/software/software/SQLite/3.36-GCCcore-11.2.0/lib:/software/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/Qhull/2020.2-GCCcore-11.2.0/lib:/software/software/LibTIFF/4.3.0-GCCcore-11.2.0/lib:/software/software/zstd/1.5.0-GCCcore-11.2.0/lib:/software/software/lz4/1.9.3-GCCcore-11.2.0/lib:/software/software/jbigkit/2.1-GCCcore-11.2.0/lib:/software/software/libjpeg-turbo/2.0.6-GCCcore-11.2.0/lib:/software/software/Tk/8.6.11-GCCcore-11.2.0/lib:/software/software/X11/20210802-GCCcore-11.2.0/lib:/software/software/fontconfig/2.13.94-GCCcore-11.2.0/lib:/software/software/util-linux/2.37-GCCcore-11.2.0/lib:/software/software/freetype/2.11.0-GCCcore-11.2.0/lib:/software/software/Brotli/1.0.9-GCCcore-11.2.0/lib:/software/software/libpng/1.6.37-GCCcore-11.2.0/lib:/.singularity.d/libs')
== 2022-09-02 08:20:48,457 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /software/software/netCDF/4.8.1-gompi-2021b/lib:/software/software/HDF5/1.12.1-gompi-2021b/lib:/software/software/Szip/2.1.1-GCCcore-11.2.0/lib:/software/software/Qhull/2020.2-GCCcore-11.2.0/lib:/software/software/LibTIFF/4.3.0-GCCcore-11.2.0/lib:/software/software/zstd/1.5.0-GCCcore-11.2.0/lib:/software/software/lz4/1.9.3-GCCcore-11.2.0/lib:/software/software/jbigkit/2.1-GCCcore-11.2.0/lib:/software/software/libjpeg-turbo/2.0.6-GCCcore-11.2.0/lib:/software/software/Tk/8.6.11-GCCcore-11.2.0/lib:/software/software/X11/20210802-GCCcore-11.2.0/lib:/software/software/fontconfig/2.13.94-GCCcore-11.2.0/lib:/software/software/util-linux/2.37-GCCcore-11.2.0/lib:/software/software/freetype/2.11.0-GCCcore-11.2.0/lib:/software/software/Brotli/1.0.9-GCCcore-11.2.0/lib:/software/software/libpng/1.6.37-GCCcore-11.2.0/lib:/software/software/Boost/1.77.0-GCC-11.2.0/lib:/software/software/ICU/69.1-GCCcore-11.2.0/lib:/software/software/DB/18.1.40-GCCcore-11.2.0/lib:/software/software/expat/2.4.1-GCCcore-11.2.0/lib:/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/software/software/Python/3.9.6-GCCcore-11.2.0/lib:/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GMP/6.2.1-GCCcore-11.2.0/lib:/software/software/SQLite/3.36-GCCcore-11.2.0/lib:/software/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/netCDF/4.8.1-gompi-2021b/lib:/software/software/HDF5/1.12.1-gompi-2021b/lib:/software/software/Szip/2.1.1-GCCcore-11.2.0/lib:/.singularity.d/libs')
== 2022-09-02 08:20:49,719 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/lib:/software/software/netCDF/4.8.1-gompi-2021b/lib:/software/software/HDF5/1.12.1-gompi-2021b/lib:/software/software/Szip/2.1.1-GCCcore-11.2.0/lib:/software/software/Qhull/2020.2-GCCcore-11.2.0/lib:/software/software/LibTIFF/4.3.0-GCCcore-11.2.0/lib:/software/software/zstd/1.5.0-GCCcore-11.2.0/lib:/software/software/lz4/1.9.3-GCCcore-11.2.0/lib:/software/software/jbigkit/2.1-GCCcore-11.2.0/lib:/software/software/libjpeg-turbo/2.0.6-GCCcore-11.2.0/lib:/software/software/Tk/8.6.11-GCCcore-11.2.0/lib:/software/software/X11/20210802-GCCcore-11.2.0/lib:/software/software/fontconfig/2.13.94-GCCcore-11.2.0/lib:/software/software/util-linux/2.37-GCCcore-11.2.0/lib:/software/software/freetype/2.11.0-GCCcore-11.2.0/lib:/software/software/Brotli/1.0.9-GCCcore-11.2.0/lib:/software/software/libpng/1.6.37-GCCcore-11.2.0/lib:/software/software/Boost/1.77.0-GCC-11.2.0/lib:/software/software/ICU/69.1-GCCcore-11.2.0/lib:/software/software/DB/18.1.40-GCCcore-11.2.0/lib:/software/software/expat/2.4.1-GCCcore-11.2.0/lib:/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/software/software/Python/3.9.6-GCCcore-11.2.0/lib:/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GMP/6.2.1-GCCcore-11.2.0/lib:/software/software/SQLite/3.36-GCCcore-11.2.0/lib:/software/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/lib:/.singularity.d/libs')
== 2022-09-02 08:20:50,973 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /home/f115261/easybuildinstall/software/PnetCDF/1.12.3-gompi-2021b/lib:/home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/lib:/software/software/netCDF/4.8.1-gompi-2021b/lib:/software/software/HDF5/1.12.1-gompi-2021b/lib:/software/software/Szip/2.1.1-GCCcore-11.2.0/lib:/software/software/Qhull/2020.2-GCCcore-11.2.0/lib:/software/software/LibTIFF/4.3.0-GCCcore-11.2.0/lib:/software/software/zstd/1.5.0-GCCcore-11.2.0/lib:/software/software/lz4/1.9.3-GCCcore-11.2.0/lib:/software/software/jbigkit/2.1-GCCcore-11.2.0/lib:/software/software/libjpeg-turbo/2.0.6-GCCcore-11.2.0/lib:/software/software/Tk/8.6.11-GCCcore-11.2.0/lib:/software/software/X11/20210802-GCCcore-11.2.0/lib:/software/software/fontconfig/2.13.94-GCCcore-11.2.0/lib:/software/software/util-linux/2.37-GCCcore-11.2.0/lib:/software/software/freetype/2.11.0-GCCcore-11.2.0/lib:/software/software/Brotli/1.0.9-GCCcore-11.2.0/lib:/software/software/libpng/1.6.37-GCCcore-11.2.0/lib:/software/software/Boost/1.77.0-GCC-11.2.0/lib:/software/software/ICU/69.1-GCCcore-11.2.0/lib:/software/software/DB/18.1.40-GCCcore-11.2.0/lib:/software/software/expat/2.4.1-GCCcore-11.2.0/lib:/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/software/software/Python/3.9.6-GCCcore-11.2.0/lib:/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GMP/6.2.1-GCCcore-11.2.0/lib:/software/software/SQLite/3.36-GCCcore-11.2.0/lib:/software/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/home/f115261/easybuildinstall/software/PnetCDF/1.12.3-gompi-2021b/lib:/.singularity.d/libs')
== 2022-09-02 08:20:53,263 environment.py:91 INFO Environment variable LD_LIBRARY_PATH set to /home/f115261/easybuildinstall/software/PnetCDF/1.12.3-gompi-2021b/lib:/home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/lib:/software/software/netCDF/4.8.1-gompi-2021b/lib:/software/software/HDF5/1.12.1-gompi-2021b/lib:/software/software/Szip/2.1.1-GCCcore-11.2.0/lib:/software/software/Qhull/2020.2-GCCcore-11.2.0/lib:/software/software/LibTIFF/4.3.0-GCCcore-11.2.0/lib:/software/software/zstd/1.5.0-GCCcore-11.2.0/lib:/software/software/lz4/1.9.3-GCCcore-11.2.0/lib:/software/software/jbigkit/2.1-GCCcore-11.2.0/lib:/software/software/libjpeg-turbo/2.0.6-GCCcore-11.2.0/lib:/software/software/Tk/8.6.11-GCCcore-11.2.0/lib:/software/software/X11/20210802-GCCcore-11.2.0/lib:/software/software/fontconfig/2.13.94-GCCcore-11.2.0/lib:/software/software/util-linux/2.37-GCCcore-11.2.0/lib:/software/software/freetype/2.11.0-GCCcore-11.2.0/lib:/software/software/Brotli/1.0.9-GCCcore-11.2.0/lib:/software/software/libpng/1.6.37-GCCcore-11.2.0/lib:/software/software/Boost/1.77.0-GCC-11.2.0/lib:/software/software/ICU/69.1-GCCcore-11.2.0/lib:/software/software/DB/18.1.40-GCCcore-11.2.0/lib:/software/software/expat/2.4.1-GCCcore-11.2.0/lib:/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/software/software/Python/3.9.6-GCCcore-11.2.0/lib:/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GMP/6.2.1-GCCcore-11.2.0/lib:/software/software/SQLite/3.36-GCCcore-11.2.0/lib:/software/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/GCCcore/11.2.0/lib64:/.singularity.d/libs (previous value: '/software/software/X11/20210802-GCCcore-11.2.0/lib:/.singularity.d/libs')
== 2022-09-02 08:20:53,265 modules.py:626 INFO Checking whether foss/2021b exists...
== 2022-09-02 08:20:53,266 modules.py:634 INFO Module foss/2021b not found in list of available modules, checking via 'module show'...
== 2022-09-02 08:20:53,266 modules.py:654 INFO Result for existence check of foss/2021b module: True
== 2022-09-02 08:20:53,270 toolchain.py:760 INFO List of toolchain dependency modules and toolchain definition match!
== 2022-09-02 08:20:53,274 compiler.py:361 INFO _set_optimal_architecture: using march=native as optarch for x86_64.
== 2022-09-02 08:20:53,306 variables.py:201 WARNING flags_for_subdirs: directory /software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/include was not found
== 2022-09-02 08:20:53,314 variables.py:201 WARNING flags_for_subdirs: directory /software/software/CMake/3.21.1-GCCcore-11.2.0/include was not found
== 2022-09-02 08:20:53,315 variables.py:201 WARNING flags_for_subdirs: directory /software/software/CMake/3.21.1-GCCcore-11.2.0/lib64 was not found
== 2022-09-02 08:20:53,316 variables.py:201 WARNING flags_for_subdirs: directory /software/software/CMake/3.21.1-GCCcore-11.2.0/lib was not found
== 2022-09-02 08:20:53,316 variables.py:201 WARNING flags_for_subdirs: directory /software/software/pkg-config/0.29.2-GCCcore-11.2.0/include was not found
== 2022-09-02 08:20:53,317 variables.py:201 WARNING flags_for_subdirs: directory /software/software/pkg-config/0.29.2-GCCcore-11.2.0/lib64 was not found
== 2022-09-02 08:20:53,318 variables.py:201 WARNING flags_for_subdirs: directory /software/software/pkg-config/0.29.2-GCCcore-11.2.0/lib was not found
== 2022-09-02 08:20:53,319 variables.py:201 WARNING flags_for_subdirs: directory /software/software/Bison/3.7.6-GCCcore-11.2.0/include was not found
== 2022-09-02 08:20:53,328 variables.py:201 WARNING flags_for_subdirs: directory /home/f115261/easybuildinstall/software/make/4.3-GCCcore-11.2.0/lib64 was not found
== 2022-09-02 08:20:53,329 variables.py:201 WARNING flags_for_subdirs: directory /home/f115261/easybuildinstall/software/make/4.3-GCCcore-11.2.0/lib was not found
== 2022-09-02 08:20:53,335 variables.py:201 WARNING flags_for_subdirs: directory /software/software/SciPy-bundle/2021.10-foss-2021b/include was not found
== 2022-09-02 08:20:53,337 variables.py:201 WARNING flags_for_subdirs: directory /software/software/Perl/5.34.0-GCCcore-11.2.0/include was not found
== 2022-09-02 08:20:53,344 variables.py:201 WARNING flags_for_subdirs: directory /software/software/matplotlib/3.4.3-foss-2021b/include was not found
== 2022-09-02 08:20:53,352 variables.py:201 WARNING flags_for_subdirs: directory /software/software/Tkinter/3.9.6-GCCcore-11.2.0/include was not found
== 2022-09-02 08:20:53,362 environment.py:91 INFO Environment variable BLAS_INC_DIR set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined)
== 2022-09-02 08:20:53,362 environment.py:91 INFO Environment variable EBVARBLAS_INC_DIR set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined)
== 2022-09-02 08:20:53,362 environment.py:91 INFO Environment variable BLAS_LAPACK_INC_DIR set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined)
== 2022-09-02 08:20:53,362 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined)
== 2022-09-02 08:20:53,362 environment.py:91 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib (previously undefined)
== 2022-09-02 08:20:53,362 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib (previously undefined)
== 2022-09-02 08:20:53,363 environment.py:91 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,363 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,363 environment.py:91 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,363 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,363 environment.py:91 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,363 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,363 environment.py:91 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,363 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,364 environment.py:91 INFO Environment variable BLAS_LIB_DIR set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib (previously undefined)
== 2022-09-02 08:20:53,364 environment.py:91 INFO Environment variable EBVARBLAS_LIB_DIR set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib (previously undefined)
== 2022-09-02 08:20:53,364 environment.py:91 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,364 environment.py:91 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,364 environment.py:91 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,364 environment.py:91 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,364 environment.py:91 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,364 environment.py:91 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,364 environment.py:91 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,365 environment.py:91 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,365 environment.py:91 INFO Environment variable CC set to mpicc (previously undefined)
== 2022-09-02 08:20:53,365 environment.py:91 INFO Environment variable EBVARCC set to mpicc (previously undefined)
== 2022-09-02 08:20:53,365 environment.py:91 INFO Environment variable CC_SEQ set to gcc (previously undefined)
== 2022-09-02 08:20:53,365 environment.py:91 INFO Environment variable EBVARCC_SEQ set to gcc (previously undefined)
== 2022-09-02 08:20:53,365 environment.py:91 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
== 2022-09-02 08:20:53,365 environment.py:91 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
== 2022-09-02 08:20:53,365 environment.py:91 INFO Environment variable CPPFLAGS set to -I/software/software/X11/20210802-GCCcore-11.2.0/include -I/home/f115261/easybuildinstall/software/PnetCDF/1.12.3-gompi-2021b/include -I/home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/include -I/software/software/netCDF/4.8.1-gompi-2021b/include -I/software/software/libreadline/8.1-GCCcore-11.2.0/include -I/software/software/Boost/1.77.0-GCC-11.2.0/include -I/software/software/Python/3.9.6-GCCcore-11.2.0/include -I/software/software/bzip2/1.0.8-GCCcore-11.2.0/include -I/software/software/zlib/1.2.11-GCCcore-11.2.0/include -I/home/f115261/easybuildinstall/software/make/4.3-GCCcore-11.2.0/include -I/software/software/flex/2.6.4-GCCcore-11.2.0/include -I/software/software/FFTW/3.3.10-gompi-2021b/include -I/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/include -I/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined)
== 2022-09-02 08:20:53,365 environment.py:91 INFO Environment variable EBVARCPPFLAGS set to -I/software/software/X11/20210802-GCCcore-11.2.0/include -I/home/f115261/easybuildinstall/software/PnetCDF/1.12.3-gompi-2021b/include -I/home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/include -I/software/software/netCDF/4.8.1-gompi-2021b/include -I/software/software/libreadline/8.1-GCCcore-11.2.0/include -I/software/software/Boost/1.77.0-GCC-11.2.0/include -I/software/software/Python/3.9.6-GCCcore-11.2.0/include -I/software/software/bzip2/1.0.8-GCCcore-11.2.0/include -I/software/software/zlib/1.2.11-GCCcore-11.2.0/include -I/home/f115261/easybuildinstall/software/make/4.3-GCCcore-11.2.0/include -I/software/software/flex/2.6.4-GCCcore-11.2.0/include -I/software/software/FFTW/3.3.10-gompi-2021b/include -I/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/include -I/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined)
== 2022-09-02 08:20:53,366 environment.py:91 INFO Environment variable CXX set to mpicxx (previously undefined)
== 2022-09-02 08:20:53,366 environment.py:91 INFO Environment variable EBVARCXX set to mpicxx (previously undefined)
== 2022-09-02 08:20:53,366 environment.py:91 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
== 2022-09-02 08:20:53,366 environment.py:91 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
== 2022-09-02 08:20:53,366 environment.py:91 INFO Environment variable CXX_SEQ set to g++ (previously undefined)
== 2022-09-02 08:20:53,366 environment.py:91 INFO Environment variable EBVARCXX_SEQ set to g++ (previously undefined)
== 2022-09-02 08:20:53,366 environment.py:91 INFO Environment variable F77 set to mpifort (previously undefined)
== 2022-09-02 08:20:53,366 environment.py:91 INFO Environment variable EBVARF77 set to mpifort (previously undefined)
== 2022-09-02 08:20:53,367 environment.py:91 INFO Environment variable F77_SEQ set to gfortran (previously undefined)
== 2022-09-02 08:20:53,367 environment.py:91 INFO Environment variable EBVARF77_SEQ set to gfortran (previously undefined)
== 2022-09-02 08:20:53,367 environment.py:91 INFO Environment variable F90 set to mpifort (previously undefined)
== 2022-09-02 08:20:53,367 environment.py:91 INFO Environment variable EBVARF90 set to mpifort (previously undefined)
== 2022-09-02 08:20:53,367 environment.py:91 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
== 2022-09-02 08:20:53,367 environment.py:91 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
== 2022-09-02 08:20:53,367 environment.py:91 INFO Environment variable F90_SEQ set to gfortran (previously undefined)
== 2022-09-02 08:20:53,367 environment.py:91 INFO Environment variable EBVARF90_SEQ set to gfortran (previously undefined)
== 2022-09-02 08:20:53,367 environment.py:91 INFO Environment variable FC set to mpifort (previously undefined)
== 2022-09-02 08:20:53,368 environment.py:91 INFO Environment variable EBVARFC set to mpifort (previously undefined)
== 2022-09-02 08:20:53,368 environment.py:91 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
== 2022-09-02 08:20:53,368 environment.py:91 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
== 2022-09-02 08:20:53,368 environment.py:91 INFO Environment variable FC_SEQ set to gfortran (previously undefined)
== 2022-09-02 08:20:53,368 environment.py:91 INFO Environment variable EBVARFC_SEQ set to gfortran (previously undefined)
== 2022-09-02 08:20:53,368 environment.py:91 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
== 2022-09-02 08:20:53,368 environment.py:91 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
== 2022-09-02 08:20:53,368 environment.py:91 INFO Environment variable FFTW_INC_DIR set to /software/software/FFTW/3.3.10-gompi-2021b/include (previously undefined)
== 2022-09-02 08:20:53,368 environment.py:91 INFO Environment variable EBVARFFTW_INC_DIR set to /software/software/FFTW/3.3.10-gompi-2021b/include (previously undefined)
== 2022-09-02 08:20:53,369 environment.py:91 INFO Environment variable FFTW_LIB_DIR set to /software/software/FFTW/3.3.10-gompi-2021b/lib (previously undefined)
== 2022-09-02 08:20:53,369 environment.py:91 INFO Environment variable EBVARFFTW_LIB_DIR set to /software/software/FFTW/3.3.10-gompi-2021b/lib (previously undefined)
== 2022-09-02 08:20:53,369 environment.py:91 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined)
== 2022-09-02 08:20:53,369 environment.py:91 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined)
== 2022-09-02 08:20:53,369 environment.py:91 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined)
== 2022-09-02 08:20:53,369 environment.py:91 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined)
== 2022-09-02 08:20:53,369 environment.py:91 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined)
== 2022-09-02 08:20:53,369 environment.py:91 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined)
== 2022-09-02 08:20:53,370 environment.py:91 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2022-09-02 08:20:53,370 environment.py:91 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2022-09-02 08:20:53,370 environment.py:91 INFO Environment variable FFT_INC_DIR set to /software/software/FFTW/3.3.10-gompi-2021b/include (previously undefined)
== 2022-09-02 08:20:53,370 environment.py:91 INFO Environment variable EBVARFFT_INC_DIR set to /software/software/FFTW/3.3.10-gompi-2021b/include (previously undefined)
== 2022-09-02 08:20:53,370 environment.py:91 INFO Environment variable FFT_LIB_DIR set to /software/software/FFTW/3.3.10-gompi-2021b/lib (previously undefined)
== 2022-09-02 08:20:53,370 environment.py:91 INFO Environment variable EBVARFFT_LIB_DIR set to /software/software/FFTW/3.3.10-gompi-2021b/lib (previously undefined)
== 2022-09-02 08:20:53,370 environment.py:91 INFO Environment variable FFT_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined)
== 2022-09-02 08:20:53,370 environment.py:91 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined)
== 2022-09-02 08:20:53,370 environment.py:91 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined)
== 2022-09-02 08:20:53,371 environment.py:91 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined)
== 2022-09-02 08:20:53,371 environment.py:91 INFO Environment variable FFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined)
== 2022-09-02 08:20:53,371 environment.py:91 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined)
== 2022-09-02 08:20:53,371 environment.py:91 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2022-09-02 08:20:53,371 environment.py:91 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2022-09-02 08:20:53,371 environment.py:91 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
== 2022-09-02 08:20:53,371 environment.py:91 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
== 2022-09-02 08:20:53,371 environment.py:91 INFO Environment variable LAPACK_INC_DIR set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined)
== 2022-09-02 08:20:53,371 environment.py:91 INFO Environment variable EBVARLAPACK_INC_DIR set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined)
== 2022-09-02 08:20:53,372 environment.py:91 INFO Environment variable LAPACK_LIB_DIR set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib (previously undefined)
== 2022-09-02 08:20:53,372 environment.py:91 INFO Environment variable EBVARLAPACK_LIB_DIR set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib (previously undefined)
== 2022-09-02 08:20:53,372 environment.py:91 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,372 environment.py:91 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,372 environment.py:91 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,372 environment.py:91 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,372 environment.py:91 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,372 environment.py:91 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,372 environment.py:91 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,373 environment.py:91 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,373 environment.py:91 INFO Environment variable LDFLAGS set to -L/software/software/X11/20210802-GCCcore-11.2.0/lib64 -L/software/software/X11/20210802-GCCcore-11.2.0/lib -L/software/software/Tkinter/3.9.6-GCCcore-11.2.0/lib64 -L/software/software/Tkinter/3.9.6-GCCcore-11.2.0/lib -L/home/f115261/easybuildinstall/software/PnetCDF/1.12.3-gompi-2021b/lib64 -L/home/f115261/easybuildinstall/software/PnetCDF/1.12.3-gompi-2021b/lib -L/home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/lib64 -L/home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/lib -L/software/software/netCDF/4.8.1-gompi-2021b/lib64 -L/software/software/netCDF/4.8.1-gompi-2021b/lib -L/software/software/matplotlib/3.4.3-foss-2021b/lib64 -L/software/software/matplotlib/3.4.3-foss-2021b/lib -L/software/software/libreadline/8.1-GCCcore-11.2.0/lib64 -L/software/software/libreadline/8.1-GCCcore-11.2.0/lib -L/software/software/Boost/1.77.0-GCC-11.2.0/lib64 -L/software/software/Boost/1.77.0-GCC-11.2.0/lib -L/software/software/Perl/5.34.0-GCCcore-11.2.0/lib64 -L/software/software/Perl/5.34.0-GCCcore-11.2.0/lib -L/software/software/SciPy-bundle/2021.10-foss-2021b/lib64 -L/software/software/SciPy-bundle/2021.10-foss-2021b/lib -L/software/software/Python/3.9.6-GCCcore-11.2.0/lib64 -L/software/software/Python/3.9.6-GCCcore-11.2.0/lib -L/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib64 -L/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib -L/software/software/zlib/1.2.11-GCCcore-11.2.0/lib64 -L/software/software/zlib/1.2.11-GCCcore-11.2.0/lib -L/software/software/flex/2.6.4-GCCcore-11.2.0/lib64 -L/software/software/flex/2.6.4-GCCcore-11.2.0/lib -L/software/software/Bison/3.7.6-GCCcore-11.2.0/lib64 -L/software/software/Bison/3.7.6-GCCcore-11.2.0/lib -L/software/software/FFTW/3.3.10-gompi-2021b/lib64 -L/software/software/FFTW/3.3.10-gompi-2021b/lib -L/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib64 -L/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib -L/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64 -L/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib -L/software/software/GCCcore/11.2.0/lib64 -L/software/software/GCCcore/11.2.0/lib (previously undefined)
== 2022-09-02 08:20:53,373 environment.py:91 INFO Environment variable EBVARLDFLAGS set to -L/software/software/X11/20210802-GCCcore-11.2.0/lib64 -L/software/software/X11/20210802-GCCcore-11.2.0/lib -L/software/software/Tkinter/3.9.6-GCCcore-11.2.0/lib64 -L/software/software/Tkinter/3.9.6-GCCcore-11.2.0/lib -L/home/f115261/easybuildinstall/software/PnetCDF/1.12.3-gompi-2021b/lib64 -L/home/f115261/easybuildinstall/software/PnetCDF/1.12.3-gompi-2021b/lib -L/home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/lib64 -L/home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/lib -L/software/software/netCDF/4.8.1-gompi-2021b/lib64 -L/software/software/netCDF/4.8.1-gompi-2021b/lib -L/software/software/matplotlib/3.4.3-foss-2021b/lib64 -L/software/software/matplotlib/3.4.3-foss-2021b/lib -L/software/software/libreadline/8.1-GCCcore-11.2.0/lib64 -L/software/software/libreadline/8.1-GCCcore-11.2.0/lib -L/software/software/Boost/1.77.0-GCC-11.2.0/lib64 -L/software/software/Boost/1.77.0-GCC-11.2.0/lib -L/software/software/Perl/5.34.0-GCCcore-11.2.0/lib64 -L/software/software/Perl/5.34.0-GCCcore-11.2.0/lib -L/software/software/SciPy-bundle/2021.10-foss-2021b/lib64 -L/software/software/SciPy-bundle/2021.10-foss-2021b/lib -L/software/software/Python/3.9.6-GCCcore-11.2.0/lib64 -L/software/software/Python/3.9.6-GCCcore-11.2.0/lib -L/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib64 -L/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib -L/software/software/zlib/1.2.11-GCCcore-11.2.0/lib64 -L/software/software/zlib/1.2.11-GCCcore-11.2.0/lib -L/software/software/flex/2.6.4-GCCcore-11.2.0/lib64 -L/software/software/flex/2.6.4-GCCcore-11.2.0/lib -L/software/software/Bison/3.7.6-GCCcore-11.2.0/lib64 -L/software/software/Bison/3.7.6-GCCcore-11.2.0/lib -L/software/software/FFTW/3.3.10-gompi-2021b/lib64 -L/software/software/FFTW/3.3.10-gompi-2021b/lib -L/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib64 -L/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib -L/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64 -L/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib -L/software/software/GCCcore/11.2.0/lib64 -L/software/software/GCCcore/11.2.0/lib (previously undefined)
== 2022-09-02 08:20:53,373 environment.py:91 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,373 environment.py:91 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,373 environment.py:91 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,373 environment.py:91 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,373 environment.py:91 INFO Environment variable LIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined)
== 2022-09-02 08:20:53,373 environment.py:91 INFO Environment variable EBVARLIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined)
== 2022-09-02 08:20:53,374 environment.py:91 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2022-09-02 08:20:53,374 environment.py:91 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2022-09-02 08:20:53,374 environment.py:91 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,374 environment.py:91 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,374 environment.py:91 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,374 environment.py:91 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,374 environment.py:91 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,374 environment.py:91 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,374 environment.py:91 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,375 environment.py:91 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,375 environment.py:91 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
== 2022-09-02 08:20:53,375 environment.py:91 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
== 2022-09-02 08:20:53,375 environment.py:91 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,375 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined)
== 2022-09-02 08:20:53,375 environment.py:91 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined)
== 2022-09-02 08:20:53,375 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined)
== 2022-09-02 08:20:53,375 environment.py:91 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2022-09-02 08:20:53,375 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2022-09-02 08:20:53,376 environment.py:91 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2022-09-02 08:20:53,376 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2022-09-02 08:20:53,376 environment.py:91 INFO Environment variable MPICC set to mpicc (previously undefined)
== 2022-09-02 08:20:53,376 environment.py:91 INFO Environment variable EBVARMPICC set to mpicc (previously undefined)
== 2022-09-02 08:20:53,376 environment.py:91 INFO Environment variable MPICXX set to mpicxx (previously undefined)
== 2022-09-02 08:20:53,376 environment.py:91 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined)
== 2022-09-02 08:20:53,376 environment.py:91 INFO Environment variable MPIF77 set to mpifort (previously undefined)
== 2022-09-02 08:20:53,376 environment.py:91 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined)
== 2022-09-02 08:20:53,376 environment.py:91 INFO Environment variable MPIF90 set to mpifort (previously undefined)
== 2022-09-02 08:20:53,377 environment.py:91 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined)
== 2022-09-02 08:20:53,377 environment.py:91 INFO Environment variable MPIFC set to mpifort (previously undefined)
== 2022-09-02 08:20:53,377 environment.py:91 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined)
== 2022-09-02 08:20:53,377 environment.py:91 INFO Environment variable MPI_INC_DIR set to /software/software/OpenMPI/4.1.1-GCC-11.2.0/include (previously undefined)
== 2022-09-02 08:20:53,377 environment.py:91 INFO Environment variable EBVARMPI_INC_DIR set to /software/software/OpenMPI/4.1.1-GCC-11.2.0/include (previously undefined)
== 2022-09-02 08:20:53,377 environment.py:91 INFO Environment variable MPI_LIB_DIR set to /software/software/OpenMPI/4.1.1-GCC-11.2.0/lib64 (previously undefined)
== 2022-09-02 08:20:53,377 environment.py:91 INFO Environment variable EBVARMPI_LIB_DIR set to /software/software/OpenMPI/4.1.1-GCC-11.2.0/lib64 (previously undefined)
== 2022-09-02 08:20:53,377 environment.py:91 INFO Environment variable MPI_LIB_SHARED set to /software/software/OpenMPI/4.1.1-GCC-11.2.0/lib64/libmpi.so (previously undefined)
== 2022-09-02 08:20:53,377 environment.py:91 INFO Environment variable EBVARMPI_LIB_SHARED set to /software/software/OpenMPI/4.1.1-GCC-11.2.0/lib64/libmpi.so (previously undefined)
== 2022-09-02 08:20:53,378 environment.py:91 INFO Environment variable MPI_LIB_STATIC set to  (previously undefined)
== 2022-09-02 08:20:53,378 environment.py:91 INFO Environment variable EBVARMPI_LIB_STATIC set to  (previously undefined)
== 2022-09-02 08:20:53,378 environment.py:91 INFO Environment variable OMPI_CC set to gcc (previously undefined)
== 2022-09-02 08:20:53,378 environment.py:91 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined)
== 2022-09-02 08:20:53,378 environment.py:91 INFO Environment variable OMPI_CXX set to g++ (previously undefined)
== 2022-09-02 08:20:53,378 environment.py:91 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined)
== 2022-09-02 08:20:53,378 environment.py:91 INFO Environment variable OMPI_F77 set to gfortran (previously undefined)
== 2022-09-02 08:20:53,378 environment.py:91 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined)
== 2022-09-02 08:20:53,378 environment.py:91 INFO Environment variable OMPI_F90 set to gfortran (previously undefined)
== 2022-09-02 08:20:53,379 environment.py:91 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined)
== 2022-09-02 08:20:53,379 environment.py:91 INFO Environment variable OMPI_FC set to gfortran (previously undefined)
== 2022-09-02 08:20:53,379 environment.py:91 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined)
== 2022-09-02 08:20:53,379 environment.py:91 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
== 2022-09-02 08:20:53,379 environment.py:91 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
== 2022-09-02 08:20:53,379 environment.py:91 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined)
== 2022-09-02 08:20:53,379 environment.py:91 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined)
== 2022-09-02 08:20:53,379 environment.py:91 INFO Environment variable SCALAPACK_INC_DIR set to  (previously undefined)
== 2022-09-02 08:20:53,379 environment.py:91 INFO Environment variable EBVARSCALAPACK_INC_DIR set to  (previously undefined)
== 2022-09-02 08:20:53,380 environment.py:91 INFO Environment variable SCALAPACK_LIB_DIR set to /software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib (previously undefined)
== 2022-09-02 08:20:53,380 environment.py:91 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib (previously undefined)
== 2022-09-02 08:20:53,380 environment.py:91 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined)
== 2022-09-02 08:20:53,380 environment.py:91 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined)
== 2022-09-02 08:20:53,380 environment.py:91 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2022-09-02 08:20:53,380 environment.py:91 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2022-09-02 08:20:53,380 environment.py:91 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,380 environment.py:91 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined)
== 2022-09-02 08:20:53,380 environment.py:91 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,381 environment.py:91 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined)
== 2022-09-02 08:20:53,381 easyblock.py:2020 INFO Using /dev/shm/f115261/AmberTools/22.3/foss-2021b/ as start dir
== 2022-09-02 08:20:53,381 build_log.py:265 INFO ... (took 27 secs)
== 2022-09-02 08:20:53,385 build_log.py:265 INFO configuring...
== 2022-09-02 08:20:53,388 easyblock.py:3767 INFO Starting configure step
== 2022-09-02 08:20:53,388 easyconfig.py:1686 INFO Generating template values...
== 2022-09-02 08:20:53,388 mpi.py:120 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2022-09-02 08:20:53,389 mpi.py:305 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2022-09-02 08:20:53,389 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='ambertools', builddir='/dev/shm/f115261/AmberTools/22.3/foss-2021b', cuda_cc_semicolon_sep='3.5;6.1;7.0', cuda_cc_space_sep='3.5 6.1 7.0', cuda_compute_capabilities='3.5,6.1,7.0', cuda_sm_comma_sep='sm_35,sm_61,sm_70', cuda_sm_space_sep='sm_35 sm_61 sm_70', github_account='ambertools', installdir='/data/f115261/easybuildinstall/software/AmberTools/22.3-foss-2021b', module_name='AmberTools/22.3-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='AmberTools', nameletter='A', nameletterlower='a', namelower='ambertools', parallel='24', perlmajver='5', perlminver='34', perlshortver='5.34', perlver='5.34.0', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='22.3', version_major='22', version_major_minor='22.3', version_minor='3', versionprefix='', versionsuffix=''
== 2022-09-02 08:20:53,389 hooks.py:166 INFO Found pre_configure_hook hook
== 2022-09-02 08:20:53,389 hooks.py:198 INFO Running 'pre_configure_hook' hook function (arguments: [<easybuild.easyblocks.amber.EB_Amber object at 0x7fd1f4039518>])...
== 2022-09-02 08:20:53,389 easyblock.py:3775 INFO Running method configure_step part of step configure
== 2022-09-02 08:20:53,391 filetools.py:382 INFO Path /data/f115261/easybuildinstall/software/AmberTools/22.3-foss-2021b successfully removed.
== 2022-09-02 08:20:53,391 run.py:233 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))'
== 2022-09-02 08:20:53,784 environment.py:91 INFO Environment variable PYTHONPATH set to /data/f115261/easybuildinstall/software/AmberTools/22.3-foss-2021b/lib/python3.9/site-packages:/software/software/Tkinter/3.9.6-GCCcore-11.2.0/lib/python3.9/site-packages:/software/software/matplotlib/3.4.3-foss-2021b/lib/python3.9/site-packages:/software/software/Pillow/8.3.2-GCCcore-11.2.0/lib/python3.9/site-packages:/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages:/software/software/pybind11/2.7.1-GCCcore-11.2.0/lib/python3.9/site-packages:/software/software/Python/3.9.6-GCCcore-11.2.0/easybuild/python (previous value: '/software/software/Tkinter/3.9.6-GCCcore-11.2.0/lib/python3.9/site-packages:/software/software/matplotlib/3.4.3-foss-2021b/lib/python3.9/site-packages:/software/software/Pillow/8.3.2-GCCcore-11.2.0/lib/python3.9/site-packages:/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages:/software/software/pybind11/2.7.1-GCCcore-11.2.0/lib/python3.9/site-packages:/software/software/Python/3.9.6-GCCcore-11.2.0/easybuild/python')
== 2022-09-02 08:20:53,786 environment.py:91 INFO Environment variable CMAKE_INCLUDE_PATH set to /software/software/FlexiBLAS/3.0.4-GCC-11.2.0/include:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas:/software/software/FFTW/3.3.10-gompi-2021b/include:/software/software/flex/2.6.4-GCCcore-11.2.0/include:/home/f115261/easybuildinstall/software/make/4.3-GCCcore-11.2.0/include:/software/software/zlib/1.2.11-GCCcore-11.2.0/include:/software/software/bzip2/1.0.8-GCCcore-11.2.0/include:/software/software/Python/3.9.6-GCCcore-11.2.0/include:/software/software/Boost/1.77.0-GCC-11.2.0/include:/software/software/libreadline/8.1-GCCcore-11.2.0/include:/software/software/netCDF/4.8.1-gompi-2021b/include:/home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/include:/home/f115261/easybuildinstall/software/PnetCDF/1.12.3-gompi-2021b/include:/software/software/X11/20210802-GCCcore-11.2.0/include:/software/software/HDF5/1.12.1-gompi-2021b/include:/software/software/Szip/2.1.1-GCCcore-11.2.0/include:/software/software/Qhull/2020.2-GCCcore-11.2.0/qhull/include:/software/software/Qhull/2020.2-GCCcore-11.2.0/include:/software/software/LibTIFF/4.3.0-GCCcore-11.2.0/include:/software/software/zstd/1.5.0-GCCcore-11.2.0/include:/software/software/lz4/1.9.3-GCCcore-11.2.0/include:/software/software/jbigkit/2.1-GCCcore-11.2.0/include:/software/software/libjpeg-turbo/2.0.6-GCCcore-11.2.0/include:/software/software/Tk/8.6.11-GCCcore-11.2.0/include:/software/software/fontconfig/2.13.94-GCCcore-11.2.0/include:/software/software/util-linux/2.37-GCCcore-11.2.0/include:/software/software/freetype/2.11.0-GCCcore-11.2.0/include/freetype2:/software/software/Brotli/1.0.9-GCCcore-11.2.0/include:/software/software/libpng/1.6.37-GCCcore-11.2.0/include:/software/software/ICU/69.1-GCCcore-11.2.0/include:/software/software/DB/18.1.40-GCCcore-11.2.0/include:/software/software/expat/2.4.1-GCCcore-11.2.0/include:/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/include:/software/software/pybind11/2.7.1-GCCcore-11.2.0/include:/software/software/libffi/3.4.2-GCCcore-11.2.0/include:/software/software/GMP/6.2.1-GCCcore-11.2.0/include:/software/software/SQLite/3.36-GCCcore-11.2.0/include:/software/software/Tcl/8.6.11-GCCcore-11.2.0/include:/software/software/libarchive/3.5.1-GCCcore-11.2.0/include:/software/software/cURL/7.78.0-GCCcore-11.2.0/include:/software/software/OpenSSL/1.1/include:/software/software/ncurses/6.2-GCCcore-11.2.0/include:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/include:/software/software/OpenMPI/4.1.1-GCC-11.2.0/include:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/include:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/include:/software/software/hwloc/2.5.0-GCCcore-11.2.0/include:/software/software/libpciaccess/0.16-GCCcore-11.2.0/include:/software/software/libxml2/2.9.10-GCCcore-11.2.0/include/libxml2:/software/software/libxml2/2.9.10-GCCcore-11.2.0/include:/software/software/XZ/5.2.5-GCCcore-11.2.0/include:/software/software/numactl/2.0.14-GCCcore-11.2.0/include:/software/software/binutils/2.37-GCCcore-11.2.0/include (previously undefined)
== 2022-09-02 08:20:53,786 environment.py:91 INFO Environment variable CMAKE_LIBRARY_PATH set to /software/software/GCCcore/11.2.0/lib64:/software/software/GCCcore/11.2.0/lib:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64:/software/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib64:/software/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/software/software/FFTW/3.3.10-gompi-2021b/lib64:/software/software/FFTW/3.3.10-gompi-2021b/lib:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib64:/software/software/Bison/3.7.6-GCCcore-11.2.0/lib:/software/software/flex/2.6.4-GCCcore-11.2.0/lib64:/software/software/flex/2.6.4-GCCcore-11.2.0/lib:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib64:/software/software/zlib/1.2.11-GCCcore-11.2.0/lib:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib64:/software/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/software/software/Python/3.9.6-GCCcore-11.2.0/lib64:/software/software/Python/3.9.6-GCCcore-11.2.0/lib:/software/software/SciPy-bundle/2021.10-foss-2021b/lib64:/software/software/SciPy-bundle/2021.10-foss-2021b/lib:/software/software/Perl/5.34.0-GCCcore-11.2.0/lib64:/software/software/Perl/5.34.0-GCCcore-11.2.0/lib:/software/software/Boost/1.77.0-GCC-11.2.0/lib64:/software/software/Boost/1.77.0-GCC-11.2.0/lib:/software/software/libreadline/8.1-GCCcore-11.2.0/lib64:/software/software/libreadline/8.1-GCCcore-11.2.0/lib:/software/software/matplotlib/3.4.3-foss-2021b/lib64:/software/software/matplotlib/3.4.3-foss-2021b/lib:/software/software/netCDF/4.8.1-gompi-2021b/lib64:/software/software/netCDF/4.8.1-gompi-2021b/lib:/home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/lib64:/home/f115261/easybuildinstall/software/netCDF-Fortran/4.5.3-gompi-2021b/lib:/home/f115261/easybuildinstall/software/PnetCDF/1.12.3-gompi-2021b/lib64:/home/f115261/easybuildinstall/software/PnetCDF/1.12.3-gompi-2021b/lib:/software/software/Tkinter/3.9.6-GCCcore-11.2.0/lib64:/software/software/Tkinter/3.9.6-GCCcore-11.2.0/lib:/software/software/X11/20210802-GCCcore-11.2.0/lib64:/software/software/X11/20210802-GCCcore-11.2.0/lib:/software/software/HDF5/1.12.1-gompi-2021b/lib:/software/software/Szip/2.1.1-GCCcore-11.2.0/lib:/software/software/Qhull/2020.2-GCCcore-11.2.0/lib:/software/software/LibTIFF/4.3.0-GCCcore-11.2.0/lib:/software/software/zstd/1.5.0-GCCcore-11.2.0/lib:/software/software/lz4/1.9.3-GCCcore-11.2.0/lib:/software/software/jbigkit/2.1-GCCcore-11.2.0/lib:/software/software/libjpeg-turbo/2.0.6-GCCcore-11.2.0/lib:/software/software/Tk/8.6.11-GCCcore-11.2.0/lib:/software/software/fontconfig/2.13.94-GCCcore-11.2.0/lib:/software/software/util-linux/2.37-GCCcore-11.2.0/lib:/software/software/freetype/2.11.0-GCCcore-11.2.0/lib:/software/software/Brotli/1.0.9-GCCcore-11.2.0/lib:/software/software/libpng/1.6.37-GCCcore-11.2.0/lib:/software/software/ICU/69.1-GCCcore-11.2.0/lib:/software/software/DB/18.1.40-GCCcore-11.2.0/lib:/software/software/expat/2.4.1-GCCcore-11.2.0/lib:/software/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GMP/6.2.1-GCCcore-11.2.0/lib:/software/software/SQLite/3.36-GCCcore-11.2.0/lib:/software/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/software/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/software/software/cURL/7.78.0-GCCcore-11.2.0/lib:/software/software/OpenSSL/1.1/lib:/software/software/ncurses/6.2-GCCcore-11.2.0/lib:/software/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/software/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/home/f115261/easybuildinstall/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/home/f115261/easybuildinstall/software/UCX/1.11.2-GCCcore-11.2.0/lib:/software/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/software/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/software/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/software/software/XZ/5.2.5-GCCcore-11.2.0/lib:/software/software/numactl/2.0.14-GCCcore-11.2.0/lib:/software/software/binutils/2.37-GCCcore-11.2.0/lib:/.singularity.d/libs (previous value: '/software/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/software/software/GCCcore/11.2.0/lib64')
== 2022-09-02 08:20:53,793 run.py:233 INFO running cmd:  cmake -DCMAKE_INSTALL_PREFIX=/data/f115261/easybuildinstall/software/AmberTools/22.3-foss-2021b -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER='mpicc' -DCMAKE_C_FLAGS='-O2 -ftree-vectorize -march=native -fno-math-errno' -DCMAKE_CXX_COMPILER='mpicxx' -DCMAKE_CXX_FLAGS='-O2 -ftree-vectorize -march=native -fno-math-errno' -DCMAKE_Fortran_COMPILER='mpifort' -DCMAKE_Fortran_FLAGS='-O2 -ftree-vectorize -march=native -fno-math-errno' -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=FALSE -DBOOST_ROOT=/software/software/Boost/1.77.0-GCC-11.2.0 -DBoost_NO_SYSTEM_PATHS=ON  -DMPI=TRUE  -DDOWNLOAD_MINICONDA=FALSE  -DPYTHON_EXECUTABLE=/software/software/Python/3.9.6-GCCcore-11.2.0/bin/python  -DFORCE_EXTERNAL_LIBS='fftw;netcdf;netcdf-fortran;zlib;boost;pnetcdf'  -DUSE_FFT=TRUE  -DCHECK_UPDATES=FALSE  -DAPPLY_UPDATES=FALSE  -DTRUST_SYSTEM_LIBS=TRUE  -DCOLOR_CMAKE_MESSAGES=FALSE  -DINSTALL_TESTS=FALSE  -DCOMPILER=AUTO  /dev/shm/f115261/AmberTools/22.3/foss-2021b/
== 2022-09-02 08:20:57,704 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): cmd " cmake -DCMAKE_INSTALL_PREFIX=/data/f115261/easybuildinstall/software/AmberTools/22.3-foss-2021b -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER='mpicc' -DCMAKE_C_FLAGS='-O2 -ftree-vectorize -march=native -fno-math-errno' -DCMAKE_CXX_COMPILER='mpicxx' -DCMAKE_CXX_FLAGS='-O2 -ftree-vectorize -march=native -fno-math-errno' -DCMAKE_Fortran_COMPILER='mpifort' -DCMAKE_Fortran_FLAGS='-O2 -ftree-vectorize -march=native -fno-math-errno' -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=FALSE -DBOOST_ROOT=/software/software/Boost/1.77.0-GCC-11.2.0 -DBoost_NO_SYSTEM_PATHS=ON  -DMPI=TRUE  -DDOWNLOAD_MINICONDA=FALSE  -DPYTHON_EXECUTABLE=/software/software/Python/3.9.6-GCCcore-11.2.0/bin/python  -DFORCE_EXTERNAL_LIBS='fftw;netcdf;netcdf-fortran;zlib;boost;pnetcdf'  -DUSE_FFT=TRUE  -DCHECK_UPDATES=FALSE  -DAPPLY_UPDATES=FALSE  -DTRUST_SYSTEM_LIBS=TRUE  -DCOLOR_CMAKE_MESSAGES=FALSE  -DINSTALL_TESTS=FALSE  -DCOMPILER=AUTO  /dev/shm/f115261/AmberTools/22.3/foss-2021b/" exited with exit code 1 and output:
-- **************************************************************************
-- Starting configuration of Amber version 22.0.0...
-- CMake Version: 3.21.1
-- For how to use this build system, please read this wiki:
--     http://ambermd.org/pmwiki/pmwiki.php/Main/CMake
-- For a list of important CMake variables, check here:
--     http://ambermd.org/pmwiki/pmwiki.php/Main/CMake-Common-Options
-- **************************************************************************
-- Amber source not found, only building AmberTools
-- The C compiler identification is GNU 11.2.0
-- The CXX compiler identification is GNU 11.2.0
-- The Fortran compiler identification is GNU 11.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - failed
-- Check for working C compiler: /software/software/OpenMPI/4.1.1-GCC-11.2.0/bin/mpicc
-- Check for working C compiler: /software/software/OpenMPI/4.1.1-GCC-11.2.0/bin/mpicc - broken
CMake Error at /apps/haswell/software/CMake/3.21.1-GCCcore-11.2.0/share/cmake-3.21/Modules/CMakeTestCCompiler.cmake:69 (message):
  The C compiler

    "/software/software/OpenMPI/4.1.1-GCC-11.2.0/bin/mpicc"

  is not able to compile a simple test program.

  It fails with the following output:

    Change Dir: /dev/shm/f115261/AmberTools/22.3/foss-2021b/easybuild_obj/CMakeFiles/CMakeTmp

    Run Build Command(s):/home/f115261/easybuildinstall/software/make/4.3-GCCcore-11.2.0/bin/gmake -f Makefile cmTC_7323f/fast && /home/f115261/easybuildinstall/software/make/4.3-GCCcore-11.2.0/bin/gmake: error while loading shared libraries: libguile-2.0.so.22: cannot open shared object file: No such file or directory


  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  CMakeLists.txt:109 (enable_language)


-- Configuring incomplete, errors occurred!
See also "/dev/shm/f115261/AmberTools/22.3/foss-2021b/easybuild_obj/CMakeFiles/CMakeOutput.log".
See also "/dev/shm/f115261/AmberTools/22.3/foss-2021b/easybuild_obj/CMakeFiles/CMakeError.log".
 (at easybuild/tools/run.py:618 in parse_cmd_output)
== 2022-09-02 08:20:57,706 build_log.py:265 INFO ... (took 4 secs)
== 2022-09-02 08:20:57,710 filetools.py:2014 INFO Removing lock /data/f115261/easybuildinstall/software/.locks/_data_f115261_easybuildinstall_software_AmberTools_22.3-foss-2021b.lock...
== 2022-09-02 08:20:57,711 filetools.py:382 INFO Path /data/f115261/easybuildinstall/software/.locks/_data_f115261_easybuildinstall_software_AmberTools_22.3-foss-2021b.lock successfully removed.
== 2022-09-02 08:20:57,711 filetools.py:2018 INFO Lock removed: /data/f115261/easybuildinstall/software/.locks/_data_f115261_easybuildinstall_software_AmberTools_22.3-foss-2021b.lock
== 2022-09-02 08:20:57,711 easyblock.py:4098 WARNING build failed (first 300 chars): cmd " cmake -DCMAKE_INSTALL_PREFIX=/data/f115261/easybuildinstall/software/AmberTools/22.3-foss-2021b -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER='mpicc' -DCMAKE_C_FLAGS='-O2 -ftree-vectorize -march=native -fno-math-errno' -DCMAKE_CXX_COMPILER='mpicxx' -DCMAKE_CXX_FLAGS='-O2 -ftree-vectorize -marc
== 2022-09-02 08:20:57,711 easyblock.py:318 INFO Closing log for application name AmberTools version 22.3