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benfasoli/chpc_r_configuration.sh

Last active October 21, 2019 23:48
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Configure R for user-scoped package management
Raw
chpc_r_configuration.sh
#!/bin/bash
# wget https://gist.github.com/benfasoli/268c55ba75f33a997c58f8fcc46dd3af/raw/ -O - | bash
mkdir -p $HOME/.Rpackages && \
echo "system('source $HOME/.bashrc')
.libPaths(
c(
'$HOME/.Rpackages',
.libPaths()
)
)
local({
repo <- getOption('repos')
repo['CRAN'] <- 'https://cloud.r-project.org/'
options(repos = repo)
})" > $HOME/.Rprofile
echo "
R_USER=$(whoami)
R_LIBS=$HOME/.Rpackages
" > $HOME/.Renviron
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