Created
June 17, 2025 08:17
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(partial) EasyBuild log for failed build of /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.3-foss-2023b.eb (PR(s) #22019)
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| == 2025-06-17 08:17:16,653 easyblock.py:365 INFO This is EasyBuild 5.1.1.dev0-rfbd88e67ebdf87cf8b2fa5ba0244d1487bc6dc32 (framework: 5.1.1.dev0-rfbd88e67ebdf87cf8b2fa5ba0244d1487bc6dc32, easyblocks: 5.1.1.dev0-rbacc8b3ffdb3943538ecef1d3cffe802ba93b299) on host jsczen3c1.int.jsc-zen3.fz-juelich.de. | |
| == 2025-06-17 08:17:16,654 easyblock.py:371 INFO This is easyblock PythonPackage from module easybuild.easyblocks.generic.pythonpackage (/home/boegelbot/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonpackage.py) | |
| == 2025-06-17 08:17:16,654 easyblock.py:1145 INFO Build dir set to /tmp/boegelbot/ETE/3.1.3/foss-2023b | |
| == 2025-06-17 08:17:16,654 config.py:770 DEBUG software install path as specified by 'installpath' and 'subdir_software': /project/def-maintainers/boegelbot/rocky9/zen3/software | |
| == 2025-06-17 08:17:16,654 easyconfig.py:2808 DEBUG Determining software installation subdir for ETE EasyConfig @ /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.3-foss-2023b.eb | |
| == 2025-06-17 08:17:16,654 easyconfig.py:2811 DEBUG Using fixed naming software installation subdir: ETE/3.1.3-foss-2023b | |
| == 2025-06-17 08:17:16,654 easyblock.py:1205 INFO Software install dir set to /project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b | |
| == 2025-06-17 08:17:16,654 config.py:770 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /project/def-maintainers/boegelbot/rocky9/zen3/modules | |
| == 2025-06-17 08:17:16,654 easyblock.py:1210 INFO Module install dir set to /project/def-maintainers/boegelbot/rocky9/zen3/modules/all | |
| == 2025-06-17 08:17:16,654 easyblock.py:339 INFO Init completed for application name ETE version 3.1.3 | |
| == 2025-06-17 08:17:16,654 pythonpackage.py:517 INFO Using pip with --no-deps option | |
| == 2025-06-17 08:17:16,654 pythonpackage.py:545 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command | |
| == 2025-06-17 08:17:16,654 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) | |
| == 2025-06-17 08:17:16,654 environment.py:93 INFO Environment variable PIP_REQUIRE_VIRTUALENV set to false (previously undefined) | |
| == 2025-06-17 08:17:16,655 environment.py:93 INFO Environment variable PIP_DISABLE_PIP_VERSION_CHECK set to true (previously undefined) | |
| == 2025-06-17 08:17:16,655 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/eb-edmku9lp/xdg-cache-home (previously undefined) | |
| == 2025-06-17 08:17:16,655 python.py:264 INFO Using /tmp/eb-edmku9lp/xdg-cache-home as pip cache directory | |
| == 2025-06-17 08:17:16,655 easyblock.py:4988 INFO Obtained application instance for ETE (easyblock: PythonPackage) | |
| == 2025-06-17 08:17:16,655 easyblock.py:5001 DEBUG Skip set to False | |
| == 2025-06-17 08:17:16,655 easyconfig.py:1812 INFO Generating template values... | |
| == 2025-06-17 08:17:16,655 templates.py:297 DEBUG config: ETE EasyConfig @ /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.3-foss-2023b.eb | |
| == 2025-06-17 08:17:16,655 templates.py:333 DEBUG version found in easyconfig is 3.1.3 | |
| == 2025-06-17 08:17:16,655 templates.py:433 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2025-06-17 08:17:16,655 templates.py:433 DEBUG name: github_account, config: %(namelower)s | |
| == 2025-06-17 08:17:16,655 templates.py:433 DEBUG name: name, config: ETE | |
| == 2025-06-17 08:17:16,655 templates.py:433 DEBUG name: version, config: 3.1.3 | |
| == 2025-06-17 08:17:16,656 templates.py:433 DEBUG name: versionsuffix, config: | |
| == 2025-06-17 08:17:16,656 templates.py:433 DEBUG name: versionprefix, config: | |
| == 2025-06-17 08:17:16,656 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2025-06-17 08:17:16,656 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2025-06-17 08:17:16,656 easyconfig.py:1831 INFO Template values: arch='x86_64', bitbucket_account='ete', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_cc_space_sep_no_period='80', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='ete', module_name='ETE/3.1.3-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='ETE', nameletter='E', nameletterlower='e', namelower='ete', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', rpath_enabled='true', software_commit='', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.1.3', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2025-06-17 08:17:16,656 one.py:149 DEBUG Not copying '__builtins__' variable from parsed easyconfig | |
| == 2025-06-17 08:17:16,656 one.py:528 DEBUG Extracted comments: | |
| {'above': {}, 'header': [], 'inline': {}, 'iterabove': {}, 'iterinline': {}, 'tail': []} | |
| == 2025-06-17 08:17:16,657 one.py:179 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2025-06-17 08:17:16,658 easyconfig.py:1371 DEBUG Dumped easyconfig: easyblock = 'PythonPackage' | |
| name = 'ETE' | |
| version = '3.1.3' | |
| homepage = 'http://etetoolkit.org' | |
| description = "A Python framework for the analysis and visualization of trees" | |
| toolchain = {'name': 'foss', 'version': '2023b'} | |
| source_urls = ['https://pypi.python.org/packages/source/e/ete3'] | |
| sources = ['ete3-%(version)s.tar.gz'] | |
| patches = ['%(name)s-%(version_major_minor)s.2-%(toolchain_name)s-2021b_fix_binpath.patch'] | |
| checksums = [ | |
| {'ete3-%(version)s.tar.gz': '06a3b7fa8ed90187b076a8dbbe5b1b62acee94201d3c6e822f55f449601ef6f2'}, | |
| {'%(name)s-%(version_major_minor)s.2-%(toolchain_name)s-2021b_fix_binpath.patch': 'f71d1135e87e1035736f67b92ebcfebd2ae4d57e48f45e25c1a6144c60f11fbd'}, | |
| ] | |
| dependencies = [ | |
| ('Python', '3.11.5', '', ('GCCcore', '13.2.0')), | |
| ('SciPy-bundle', '2023.11', '', ('gfbf', '2023b')), | |
| ('lxml', '4.9.3', '', ('GCCcore', '13.2.0')), | |
| ('PyQt5', '5.15.10', '', ('GCCcore', '13.2.0')), | |
| ] | |
| download_dep_fail = True | |
| options = {'modulename': 'ete3'} | |
| sanity_check_paths = { | |
| 'files': ['bin/ete3'], | |
| 'dirs': ['lib/python%(pyshortver)s/site-packages'], | |
| } | |
| moduleclass = 'vis' | |
| == 2025-06-17 08:17:16,658 filetools.py:2029 INFO Creating directory /tmp/eb-edmku9lp/reprod_20250617081716_1504924 (parents: True, set_gid: True, sticky: False) | |
| == 2025-06-17 08:17:16,658 filetools.py:1881 INFO Adjusting permissions recursively for /tmp/eb-edmku9lp/reprod_20250617081716_1504924 | |
| == 2025-06-17 08:17:16,658 filetools.py:1911 DEBUG Current permissions for /tmp/eb-edmku9lp/reprod_20250617081716_1504924: 0o40755 | |
| == 2025-06-17 08:17:16,658 filetools.py:1916 DEBUG Adding permissions for /tmp/eb-edmku9lp/reprod_20250617081716_1504924: 0o2000 | |
| == 2025-06-17 08:17:16,658 filetools.py:1931 DEBUG Changing permissions for /tmp/eb-edmku9lp/reprod_20250617081716_1504924 to 0o42755 | |
| == 2025-06-17 08:17:16,658 easyblock.py:5249 INFO Dumped easyconfig instance to /tmp/eb-edmku9lp/reprod_20250617081716_1504924/ETE-3.1.3-foss-2023b.eb | |
| == 2025-06-17 08:17:16,658 filetools.py:2029 INFO Creating directory /tmp/eb-edmku9lp/reprod_20250617081716_1504924/easyblocks (parents: True, set_gid: True, sticky: False) | |
| == 2025-06-17 08:17:16,659 filetools.py:1881 INFO Adjusting permissions recursively for /tmp/eb-edmku9lp/reprod_20250617081716_1504924/easyblocks | |
| == 2025-06-17 08:17:16,659 filetools.py:1911 DEBUG Current permissions for /tmp/eb-edmku9lp/reprod_20250617081716_1504924/easyblocks: 0o42755 | |
| == 2025-06-17 08:17:16,659 filetools.py:1916 DEBUG Adding permissions for /tmp/eb-edmku9lp/reprod_20250617081716_1504924/easyblocks: 0o2000 | |
| == 2025-06-17 08:17:16,659 filetools.py:1929 DEBUG Current permissions for /tmp/eb-edmku9lp/reprod_20250617081716_1504924/easyblocks are already OK: 0o42755 | |
| == 2025-06-17 08:17:16,660 filetools.py:2513 INFO /home/boegelbot/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonpackage.py copied to /tmp/eb-edmku9lp/reprod_20250617081716_1504924/easyblocks/pythonpackage.py | |
| == 2025-06-17 08:17:16,660 easyblock.py:5229 INFO Dumped easyblock pythonpackage.py required for reproduction to /tmp/eb-edmku9lp/reprod_20250617081716_1504924/easyblocks | |
| == 2025-06-17 08:17:16,660 filetools.py:2029 INFO Creating directory /tmp/eb-edmku9lp/reprod_20250617081716_1504924/hooks (parents: True, set_gid: True, sticky: False) | |
| == 2025-06-17 08:17:16,660 filetools.py:1881 INFO Adjusting permissions recursively for /tmp/eb-edmku9lp/reprod_20250617081716_1504924/hooks | |
| == 2025-06-17 08:17:16,660 filetools.py:1911 DEBUG Current permissions for /tmp/eb-edmku9lp/reprod_20250617081716_1504924/hooks: 0o42755 | |
| == 2025-06-17 08:17:16,660 filetools.py:1916 DEBUG Adding permissions for /tmp/eb-edmku9lp/reprod_20250617081716_1504924/hooks: 0o2000 | |
| == 2025-06-17 08:17:16,660 filetools.py:1929 DEBUG Current permissions for /tmp/eb-edmku9lp/reprod_20250617081716_1504924/hooks are already OK: 0o42755 | |
| == 2025-06-17 08:17:16,661 filetools.py:2513 INFO /home/boegelbot/boegelbot/eb_hooks.py copied to /tmp/eb-edmku9lp/reprod_20250617081716_1504924/hooks/eb_hooks.py | |
| == 2025-06-17 08:17:16,661 easyblock.py:5261 INFO Dumped hooks file /home/boegelbot/boegelbot/eb_hooks.py which is (potentially) required for reproduction to /tmp/eb-edmku9lp/reprod_20250617081716_1504924/hooks/eb_hooks.py | |
| == 2025-06-17 08:17:16,678 easyblock.py:2437 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2025-06-17 08:17:16,678 build_log.py:322 INFO building and installing ETE/3.1.3-foss-2023b... | |
| == 2025-06-17 08:17:16,678 config.py:770 DEBUG software install path as specified by 'installpath' and 'subdir_software': /project/def-maintainers/boegelbot/rocky9/zen3/software | |
| == 2025-06-17 08:17:16,678 filetools.py:2112 INFO Lock /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_ETE_3.1.3-foss-2023b.lock does not exist | |
| == 2025-06-17 08:17:16,678 config.py:770 DEBUG software install path as specified by 'installpath' and 'subdir_software': /project/def-maintainers/boegelbot/rocky9/zen3/software | |
| == 2025-06-17 08:17:16,679 filetools.py:2069 INFO Creating lock at /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_ETE_3.1.3-foss-2023b.lock... | |
| == 2025-06-17 08:17:16,679 filetools.py:2029 INFO Creating directory /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_ETE_3.1.3-foss-2023b.lock (parents: True, set_gid: True, sticky: False) | |
| == 2025-06-17 08:17:16,679 filetools.py:1881 INFO Adjusting permissions recursively for /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_ETE_3.1.3-foss-2023b.lock | |
| == 2025-06-17 08:17:16,680 filetools.py:1911 DEBUG Current permissions for /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_ETE_3.1.3-foss-2023b.lock: 0o42755 | |
| == 2025-06-17 08:17:16,680 filetools.py:1916 DEBUG Adding permissions for /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_ETE_3.1.3-foss-2023b.lock: 0o2000 | |
| == 2025-06-17 08:17:16,680 filetools.py:1929 DEBUG Current permissions for /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_ETE_3.1.3-foss-2023b.lock are already OK: 0o42755 | |
| == 2025-06-17 08:17:16,680 filetools.py:2078 INFO Lock created: /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_ETE_3.1.3-foss-2023b.lock | |
| == 2025-06-17 08:17:16,680 easyblock.py:2473 INFO Setting parallelism: 8 | |
| == 2025-06-17 08:17:16,680 easyblock.py:4650 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False, skip_sanity_check: False) | |
| == 2025-06-17 08:17:16,680 build_log.py:322 INFO fetching files and verifying checksums... | |
| == 2025-06-17 08:17:16,681 easyblock.py:4659 INFO Starting fetch step | |
| == 2025-06-17 08:17:16,681 easyconfig.py:1812 INFO Generating template values... | |
| == 2025-06-17 08:17:16,681 templates.py:297 DEBUG config: ETE EasyConfig @ /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.3-foss-2023b.eb | |
| == 2025-06-17 08:17:16,681 templates.py:333 DEBUG version found in easyconfig is 3.1.3 | |
| == 2025-06-17 08:17:16,681 templates.py:433 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2025-06-17 08:17:16,681 templates.py:433 DEBUG name: github_account, config: %(namelower)s | |
| == 2025-06-17 08:17:16,681 templates.py:433 DEBUG name: name, config: ETE | |
| == 2025-06-17 08:17:16,681 templates.py:433 DEBUG name: version, config: 3.1.3 | |
| == 2025-06-17 08:17:16,681 templates.py:433 DEBUG name: versionsuffix, config: | |
| == 2025-06-17 08:17:16,681 templates.py:433 DEBUG name: versionprefix, config: | |
| == 2025-06-17 08:17:16,681 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2025-06-17 08:17:16,681 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2025-06-17 08:17:16,681 easyconfig.py:1831 INFO Template values: arch='x86_64', bitbucket_account='ete', builddir='/tmp/boegelbot/ETE/3.1.3/foss-2023b', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_cc_space_sep_no_period='80', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='ete', installdir='/project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b', module_name='ETE/3.1.3-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='ETE', nameletter='E', nameletterlower='e', namelower='ete', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', rpath_enabled='true', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.1.3', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2025-06-17 08:17:16,681 easyblock.py:4667 INFO Running method fetch_step part of step fetch | |
| == 2025-06-17 08:17:16,682 easyblock.py:2574 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2025-06-17 08:17:16,682 easyblock.py:888 INFO Considering directory in which easyconfig file is located when searching for ete3-3.1.3.tar.gz: /tmp/eb-edmku9lp/files_pr22019/e/ETE | |
| == 2025-06-17 08:17:16,682 tools.py:275 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/boegelbot/easybuild/easybuild-framework/eb | |
| == 2025-06-17 08:17:16,682 tools.py:291 INFO Not considering /home/boegelbot/easybuild (no easybuild/easyconfigs subdir found) | |
| == 2025-06-17 08:17:16,682 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,683 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-edmku9lp/files_pr22019/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,683 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-edmku9lp/fake_vsc_6dvzrk4s/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,683 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/boegelbot/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,683 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/.local/lib/python3.9/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,683 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/easybuild-framework/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,683 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/easybuild-easyblocks/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,683 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/easybuild-easyconfigs/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,683 tools.py:308 DEBUG Added /home/boegelbot/easybuild/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,683 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python39.zip/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,684 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,684 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/lib-dynload/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,684 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/.local/lib/python3.9/site-packages/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,684 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/site-packages/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,684 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.9/site-packages/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,747 easyblock.py:930 INFO Found file ete3-3.1.3.tar.gz at /project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz | |
| == 2025-06-17 08:17:16,747 easyblock.py:529 DEBUG File /project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz found for source ete3-3.1.3.tar.gz | |
| == 2025-06-17 08:17:16,747 easyblock.py:573 INFO Added sources: [{'name': 'ete3-3.1.3.tar.gz', 'path': '/project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz', 'cmd': None, 'checksum': {'ete3-3.1.3.tar.gz': '06a3b7fa8ed90187b076a8dbbe5b1b62acee94201d3c6e822f55f449601ef6f2'}, 'finalpath': '/tmp/boegelbot/ETE/3.1.3/foss-2023b'}] | |
| == 2025-06-17 08:17:16,748 easyblock.py:888 INFO Considering directory in which easyconfig file is located when searching for ETE-3.1.2-foss-2021b_fix_binpath.patch: /tmp/eb-edmku9lp/files_pr22019/e/ETE | |
| == 2025-06-17 08:17:16,748 tools.py:275 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/boegelbot/easybuild/easybuild-framework/eb | |
| == 2025-06-17 08:17:16,748 tools.py:291 INFO Not considering /home/boegelbot/easybuild (no easybuild/easyconfigs subdir found) | |
| == 2025-06-17 08:17:16,748 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,748 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-edmku9lp/files_pr22019/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,748 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-edmku9lp/fake_vsc_6dvzrk4s/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,748 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/boegelbot/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,748 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/.local/lib/python3.9/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,748 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/easybuild-framework/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,748 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/easybuild-easyblocks/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,748 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/easybuild-easyconfigs/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,748 tools.py:308 DEBUG Added /home/boegelbot/easybuild/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,748 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python39.zip/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,748 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,748 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/lib-dynload/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,749 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/.local/lib/python3.9/site-packages/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,749 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/site-packages/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,749 tools.py:304 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.9/site-packages/easybuild/easyconfigs | |
| == 2025-06-17 08:17:16,749 easyblock.py:930 INFO Found file ETE-3.1.2-foss-2021b_fix_binpath.patch at /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.2-foss-2021b_fix_binpath.patch | |
| == 2025-06-17 08:17:16,749 easyblock.py:597 DEBUG File /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.2-foss-2021b_fix_binpath.patch found for patch ETE-3.1.2-foss-2021b_fix_binpath.patch | |
| == 2025-06-17 08:17:16,749 easyblock.py:612 INFO Added patches: [{'name': 'ETE-3.1.2-foss-2021b_fix_binpath.patch', 'postinstall': False, 'path': '/tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.2-foss-2021b_fix_binpath.patch', 'checksum': {'ETE-3.1.2-foss-2021b_fix_binpath.patch': 'f71d1135e87e1035736f67b92ebcfebd2ae4d57e48f45e25c1a6144c60f11fbd'}}] | |
| == 2025-06-17 08:17:16,749 filetools.py:1305 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2025-06-17 08:17:16,814 easyblock.py:2628 INFO sha256 checksum for /project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz: 06a3b7fa8ed90187b076a8dbbe5b1b62acee94201d3c6e822f55f449601ef6f2 | |
| == 2025-06-17 08:17:16,814 filetools.py:1305 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2025-06-17 08:17:16,814 easyblock.py:2628 INFO sha256 checksum for /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.2-foss-2021b_fix_binpath.patch: f71d1135e87e1035736f67b92ebcfebd2ae4d57e48f45e25c1a6144c60f11fbd | |
| == 2025-06-17 08:17:16,814 easyconfig.py:2795 DEBUG Determining full module name for ETE EasyConfig @ /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.3-foss-2023b.eb (force_visible: False) | |
| == 2025-06-17 08:17:16,814 easyconfig.py:2772 DEBUG No alternative software name specified to determine module name with | |
| == 2025-06-17 08:17:16,814 utilities.py:114 DEBUG Module name ETE/3.1.3-foss-2023b validated | |
| == 2025-06-17 08:17:16,815 easyconfig.py:2803 DEBUG Obtained valid full module name ETE/3.1.3-foss-2023b | |
| == 2025-06-17 08:17:16,815 config.py:770 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /project/def-maintainers/boegelbot/rocky9/zen3/modules | |
| == 2025-06-17 08:17:16,815 easyblock.py:2663 INFO Checking dirs that need to be created: ['/project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b', '/project/def-maintainers/boegelbot/rocky9/zen3/modules/all/ETE', '/project/def-maintainers/boegelbot/rocky9/zen3/modules/vis/ETE'] | |
| == 2025-06-17 08:17:16,815 filetools.py:2029 INFO Creating directory /project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b (parents: True, set_gid: True, sticky: False) | |
| == 2025-06-17 08:17:16,815 filetools.py:1881 INFO Adjusting permissions recursively for /project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b | |
| == 2025-06-17 08:17:16,816 filetools.py:1911 DEBUG Current permissions for /project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b: 0o42755 | |
| == 2025-06-17 08:17:16,816 filetools.py:1916 DEBUG Adding permissions for /project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b: 0o2000 | |
| == 2025-06-17 08:17:16,816 filetools.py:1929 DEBUG Current permissions for /project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b are already OK: 0o42755 | |
| == 2025-06-17 08:17:16,816 filetools.py:2054 DEBUG Not creating existing path /project/def-maintainers/boegelbot/rocky9/zen3/modules/all/ETE | |
| == 2025-06-17 08:17:16,830 filetools.py:2054 DEBUG Not creating existing path /project/def-maintainers/boegelbot/rocky9/zen3/modules/vis/ETE | |
| == 2025-06-17 08:17:16,830 easyblock.py:4667 INFO Running method checksum_step part of step fetch | |
| == 2025-06-17 08:17:16,830 filetools.py:1305 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2025-06-17 08:17:16,834 filetools.py:1390 DEBUG Computed sha256 checksum for /project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz: 06a3b7fa8ed90187b076a8dbbe5b1b62acee94201d3c6e822f55f449601ef6f2 (correct checksum: 06a3b7fa8ed90187b076a8dbbe5b1b62acee94201d3c6e822f55f449601ef6f2) | |
| == 2025-06-17 08:17:16,834 easyblock.py:2681 INFO Checksum verification for /project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz using {'ete3-3.1.3.tar.gz': '06a3b7fa8ed90187b076a8dbbe5b1b62acee94201d3c6e822f55f449601ef6f2'} passed. | |
| == 2025-06-17 08:17:16,834 filetools.py:1305 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2025-06-17 08:17:16,834 filetools.py:1390 DEBUG Computed sha256 checksum for /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.2-foss-2021b_fix_binpath.patch: f71d1135e87e1035736f67b92ebcfebd2ae4d57e48f45e25c1a6144c60f11fbd (correct checksum: f71d1135e87e1035736f67b92ebcfebd2ae4d57e48f45e25c1a6144c60f11fbd) | |
| == 2025-06-17 08:17:16,834 easyblock.py:2681 INFO Checksum verification for /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.2-foss-2021b_fix_binpath.patch using {'ETE-3.1.2-foss-2021b_fix_binpath.patch': 'f71d1135e87e1035736f67b92ebcfebd2ae4d57e48f45e25c1a6144c60f11fbd'} passed. | |
| == 2025-06-17 08:17:16,834 build_log.py:322 INFO ... (took < 1 sec) | |
| == 2025-06-17 08:17:16,834 easyblock.py:4650 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False, skip_sanity_check: False) | |
| == 2025-06-17 08:17:16,834 build_log.py:322 INFO creating build dir, resetting environment... | |
| == 2025-06-17 08:17:16,834 easyblock.py:4659 INFO Starting ready step | |
| == 2025-06-17 08:17:16,834 easyconfig.py:1812 INFO Generating template values... | |
| == 2025-06-17 08:17:16,834 templates.py:297 DEBUG config: ETE EasyConfig @ /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.3-foss-2023b.eb | |
| == 2025-06-17 08:17:16,834 templates.py:333 DEBUG version found in easyconfig is 3.1.3 | |
| == 2025-06-17 08:17:16,834 templates.py:433 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2025-06-17 08:17:16,835 templates.py:433 DEBUG name: github_account, config: %(namelower)s | |
| == 2025-06-17 08:17:16,835 templates.py:433 DEBUG name: name, config: ETE | |
| == 2025-06-17 08:17:16,835 templates.py:433 DEBUG name: version, config: 3.1.3 | |
| == 2025-06-17 08:17:16,835 templates.py:433 DEBUG name: versionsuffix, config: | |
| == 2025-06-17 08:17:16,835 templates.py:433 DEBUG name: versionprefix, config: | |
| == 2025-06-17 08:17:16,835 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2025-06-17 08:17:16,835 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2025-06-17 08:17:16,835 easyconfig.py:1831 INFO Template values: arch='x86_64', bitbucket_account='ete', builddir='/tmp/boegelbot/ETE/3.1.3/foss-2023b', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_cc_space_sep_no_period='80', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='ete', installdir='/project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b', module_name='ETE/3.1.3-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='ETE', nameletter='E', nameletterlower='e', namelower='ete', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', rpath_enabled='true', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.1.3', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2025-06-17 08:17:16,835 easyblock.py:4667 INFO Running method check_readiness_step part of step ready | |
| == 2025-06-17 08:17:16,835 modules.py:1240 DEBUG Current MODULEPATH: /project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
| == 2025-06-17 08:17:16,835 modules.py:1249 DEBUG Changing LD_LIBRARY_PATH from '/opt/software/slurm/lib64' to '/opt/software/slurm/lib64:/opt/software/slurm/lib64' in environment for module command | |
| == 2025-06-17 08:17:16,835 run.py:502 INFO Running shell command '/usr/share/lmod/lmod/libexec/lmod python --terse list' in /home/boegelbot/boegelbot | |
| == 2025-06-17 08:17:16,871 run.py:610 INFO Output of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stdout only): | |
| import os | |
| os.environ["MODULEPATH"] = "/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "cmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsCn0K"; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| _mlstatus = True | |
| == 2025-06-17 08:17:16,871 run.py:611 INFO Warnings and errors of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stderr only): | |
| No modules loaded | |
| == 2025-06-17 08:17:16,871 run.py:616 INFO Shell command completed successfully (see output above): /usr/share/lmod/lmod/libexec/lmod python --terse list | |
| == 2025-06-17 08:17:16,871 modules.py:1937 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine | |
| == 2025-06-17 08:17:16,872 easyblock.py:4667 INFO Running method make_builddir part of step ready | |
| == 2025-06-17 08:17:16,872 easyblock.py:1155 DEBUG Creating the build directory /tmp/boegelbot/ETE/3.1.3/foss-2023b (cleanup: True) | |
| == 2025-06-17 08:17:16,872 filetools.py:2029 INFO Creating directory /tmp/boegelbot/ETE/3.1.3/foss-2023b (parents: True, set_gid: True, sticky: False) | |
| == 2025-06-17 08:17:16,873 filetools.py:1881 INFO Adjusting permissions recursively for /tmp/boegelbot/ETE | |
| == 2025-06-17 08:17:16,873 filetools.py:1911 DEBUG Current permissions for /tmp/boegelbot/ETE: 0o42755 | |
| == 2025-06-17 08:17:16,873 filetools.py:1916 DEBUG Adding permissions for /tmp/boegelbot/ETE: 0o2000 | |
| == 2025-06-17 08:17:16,873 filetools.py:1929 DEBUG Current permissions for /tmp/boegelbot/ETE are already OK: 0o42755 | |
| == 2025-06-17 08:17:16,873 filetools.py:1911 DEBUG Current permissions for /tmp/boegelbot/ETE/3.1.3: 0o42755 | |
| == 2025-06-17 08:17:16,873 filetools.py:1916 DEBUG Adding permissions for /tmp/boegelbot/ETE/3.1.3: 0o2000 | |
| == 2025-06-17 08:17:16,873 filetools.py:1929 DEBUG Current permissions for /tmp/boegelbot/ETE/3.1.3 are already OK: 0o42755 | |
| == 2025-06-17 08:17:16,873 filetools.py:1911 DEBUG Current permissions for /tmp/boegelbot/ETE/3.1.3/foss-2023b: 0o42755 | |
| == 2025-06-17 08:17:16,873 filetools.py:1916 DEBUG Adding permissions for /tmp/boegelbot/ETE/3.1.3/foss-2023b: 0o2000 | |
| == 2025-06-17 08:17:16,873 filetools.py:1929 DEBUG Current permissions for /tmp/boegelbot/ETE/3.1.3/foss-2023b are already OK: 0o42755 | |
| == 2025-06-17 08:17:16,873 easyblock.py:4667 INFO Running method reset_env part of step ready | |
| == 2025-06-17 08:17:16,874 easyblock.py:4667 INFO Running method handle_iterate_opts part of step ready | |
| == 2025-06-17 08:17:16,874 easyconfig.py:1812 INFO Generating template values... | |
| == 2025-06-17 08:17:16,874 templates.py:297 DEBUG config: ETE EasyConfig @ /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.3-foss-2023b.eb | |
| == 2025-06-17 08:17:16,874 templates.py:333 DEBUG version found in easyconfig is 3.1.3 | |
| == 2025-06-17 08:17:16,874 templates.py:433 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2025-06-17 08:17:16,874 templates.py:433 DEBUG name: github_account, config: %(namelower)s | |
| == 2025-06-17 08:17:16,874 templates.py:433 DEBUG name: name, config: ETE | |
| == 2025-06-17 08:17:16,874 templates.py:433 DEBUG name: version, config: 3.1.3 | |
| == 2025-06-17 08:17:16,874 templates.py:433 DEBUG name: versionsuffix, config: | |
| == 2025-06-17 08:17:16,874 templates.py:433 DEBUG name: versionprefix, config: | |
| == 2025-06-17 08:17:16,874 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2025-06-17 08:17:16,874 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2025-06-17 08:17:16,875 easyconfig.py:1831 INFO Template values: arch='x86_64', bitbucket_account='ete', builddir='/tmp/boegelbot/ETE/3.1.3/foss-2023b', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_cc_space_sep_no_period='80', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='ete', installdir='/project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b', module_name='ETE/3.1.3-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='ETE', nameletter='E', nameletterlower='e', namelower='ete', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', rpath_enabled='true', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.1.3', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2025-06-17 08:17:16,875 build_log.py:322 INFO ... (took < 1 sec) | |
| == 2025-06-17 08:17:16,875 easyblock.py:4650 DEBUG Not skipping extract step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False, skip_sanity_check: False) | |
| == 2025-06-17 08:17:16,875 build_log.py:322 INFO unpacking... | |
| == 2025-06-17 08:17:16,875 easyblock.py:4659 INFO Starting extract step | |
| == 2025-06-17 08:17:16,875 easyconfig.py:1812 INFO Generating template values... | |
| == 2025-06-17 08:17:16,875 templates.py:297 DEBUG config: ETE EasyConfig @ /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.3-foss-2023b.eb | |
| == 2025-06-17 08:17:16,875 templates.py:333 DEBUG version found in easyconfig is 3.1.3 | |
| == 2025-06-17 08:17:16,875 templates.py:433 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2025-06-17 08:17:16,875 templates.py:433 DEBUG name: github_account, config: %(namelower)s | |
| == 2025-06-17 08:17:16,875 templates.py:433 DEBUG name: name, config: ETE | |
| == 2025-06-17 08:17:16,875 templates.py:433 DEBUG name: version, config: 3.1.3 | |
| == 2025-06-17 08:17:16,875 templates.py:433 DEBUG name: versionsuffix, config: | |
| == 2025-06-17 08:17:16,875 templates.py:433 DEBUG name: versionprefix, config: | |
| == 2025-06-17 08:17:16,876 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2025-06-17 08:17:16,876 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2025-06-17 08:17:16,876 easyconfig.py:1831 INFO Template values: arch='x86_64', bitbucket_account='ete', builddir='/tmp/boegelbot/ETE/3.1.3/foss-2023b', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_cc_space_sep_no_period='80', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='ete', installdir='/project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b', module_name='ETE/3.1.3-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='ETE', nameletter='E', nameletterlower='e', namelower='ete', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', rpath_enabled='true', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.1.3', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2025-06-17 08:17:16,876 easyblock.py:4667 INFO Running method extract_step part of step extract | |
| == 2025-06-17 08:17:16,876 easyblock.py:2812 INFO Unpacking source ete3-3.1.3.tar.gz | |
| == 2025-06-17 08:17:16,876 filetools.py:2054 DEBUG Not creating existing path /tmp/boegelbot/ETE/3.1.3/foss-2023b | |
| == 2025-06-17 08:17:16,876 filetools.py:491 DEBUG Unpacking /project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz in directory /tmp/boegelbot/ETE/3.1.3/foss-2023b | |
| == 2025-06-17 08:17:16,876 filetools.py:500 DEBUG Using command derived from file extension to unpack /project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz: tar xzf /project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz | |
| == 2025-06-17 08:17:16,876 run.py:454 INFO run_shell_cmd: command environment of "tar xzf /project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz" will be saved to /tmp/eb-edmku9lp/run-shell-cmd-output/tar-5gnr9224 | |
| == 2025-06-17 08:17:16,876 run.py:457 INFO run_shell_cmd: Output of "tar xzf /project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz" will be logged to /tmp/eb-edmku9lp/run-shell-cmd-output/tar-5gnr9224/out.txt | |
| == 2025-06-17 08:17:16,889 run.py:491 INFO Path to bash that will be used to run shell commands: /usr/bin/bash | |
| == 2025-06-17 08:17:16,889 run.py:502 INFO Running shell command 'tar xzf /project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz' in /tmp/boegelbot/ETE/3.1.3/foss-2023b | |
| == 2025-06-17 08:17:16,985 run.py:613 INFO Output of 'tar ...' shell command (stdout + stderr): | |
| == 2025-06-17 08:17:16,985 run.py:616 INFO Shell command completed successfully (see output above): tar xzf /project/def-maintainers/boegelbot/sources/e/ETE/ete3-3.1.3.tar.gz | |
| == 2025-06-17 08:17:16,986 filetools.py:1445 DEBUG Last dir list ['CITATION.txt', 'LICENSE', 'MANIFEST.in', 'PKG-INFO', 'README.rst', 'THANKS.rst', 'VERSION', 'ete3', 'ete3.egg-info', 'examples', 'ez_setup.py', 'setup.cfg', 'setup.py'] | |
| == 2025-06-17 08:17:16,986 filetools.py:1446 DEBUG Possible new dir /tmp/boegelbot/ETE/3.1.3/foss-2023b/ete3-3.1.3 found | |
| == 2025-06-17 08:17:16,986 build_log.py:322 INFO ... (took < 1 sec) | |
| == 2025-06-17 08:17:16,986 easyblock.py:4650 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False, skip_sanity_check: False) | |
| == 2025-06-17 08:17:16,986 build_log.py:322 INFO patching... | |
| == 2025-06-17 08:17:16,986 easyblock.py:4659 INFO Starting patch step | |
| == 2025-06-17 08:17:16,986 easyconfig.py:1812 INFO Generating template values... | |
| == 2025-06-17 08:17:16,986 templates.py:297 DEBUG config: ETE EasyConfig @ /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.3-foss-2023b.eb | |
| == 2025-06-17 08:17:16,986 templates.py:333 DEBUG version found in easyconfig is 3.1.3 | |
| == 2025-06-17 08:17:16,987 templates.py:433 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2025-06-17 08:17:16,987 templates.py:433 DEBUG name: github_account, config: %(namelower)s | |
| == 2025-06-17 08:17:16,987 templates.py:433 DEBUG name: name, config: ETE | |
| == 2025-06-17 08:17:16,987 templates.py:433 DEBUG name: version, config: 3.1.3 | |
| == 2025-06-17 08:17:16,987 templates.py:433 DEBUG name: versionsuffix, config: | |
| == 2025-06-17 08:17:16,987 templates.py:433 DEBUG name: versionprefix, config: | |
| == 2025-06-17 08:17:16,987 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2025-06-17 08:17:16,987 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2025-06-17 08:17:16,987 easyconfig.py:1831 INFO Template values: arch='x86_64', bitbucket_account='ete', builddir='/tmp/boegelbot/ETE/3.1.3/foss-2023b', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_cc_space_sep_no_period='80', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='ete', installdir='/project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b', module_name='ETE/3.1.3-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='ETE', nameletter='E', nameletterlower='e', namelower='ete', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', rpath_enabled='true', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.1.3', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2025-06-17 08:17:16,987 easyblock.py:4667 INFO Running method patch_step part of step patch | |
| == 2025-06-17 08:17:16,987 easyblock.py:2830 INFO Applying patch ETE-3.1.2-foss-2021b_fix_binpath.patch | |
| == 2025-06-17 08:17:16,988 easyblock.py:2843 DEBUG Source index: 0; patch level: None; source path suffix: ; copy patch: False; options: None | |
| == 2025-06-17 08:17:16,988 easyblock.py:2849 DEBUG Determine begin path for patch ETE-3.1.2-foss-2021b_fix_binpath.patch: /tmp/boegelbot/ETE/3.1.3/foss-2023b/ete3-3.1.3 | |
| == 2025-06-17 08:17:16,988 easyblock.py:2858 DEBUG Applying patch {'name': 'ETE-3.1.2-foss-2021b_fix_binpath.patch', 'postinstall': False, 'path': '/tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.2-foss-2021b_fix_binpath.patch', 'checksum': {'ETE-3.1.2-foss-2021b_fix_binpath.patch': 'f71d1135e87e1035736f67b92ebcfebd2ae4d57e48f45e25c1a6144c60f11fbd'}, 'sha256': 'f71d1135e87e1035736f67b92ebcfebd2ae4d57e48f45e25c1a6144c60f11fbd'} in path /tmp/boegelbot/ETE/3.1.3/foss-2023b/ete3-3.1.3 | |
| == 2025-06-17 08:17:16,988 filetools.py:1706 DEBUG Guessed patch level 1 for patch /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.2-foss-2021b_fix_binpath.patch | |
| == 2025-06-17 08:17:16,988 run.py:454 INFO run_shell_cmd: command environment of "patch -p1 -i /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.2-foss-2021b_fix_binpath.patch" will be saved to /tmp/eb-edmku9lp/run-shell-cmd-output/patch-1mwwb5xz | |
| == 2025-06-17 08:17:16,988 run.py:457 INFO run_shell_cmd: Output of "patch -p1 -i /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.2-foss-2021b_fix_binpath.patch" will be logged to /tmp/eb-edmku9lp/run-shell-cmd-output/patch-1mwwb5xz/out.txt | |
| == 2025-06-17 08:17:17,002 run.py:491 INFO Path to bash that will be used to run shell commands: /usr/bin/bash | |
| == 2025-06-17 08:17:17,002 run.py:502 INFO Running shell command 'patch -p1 -i /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.2-foss-2021b_fix_binpath.patch' in /tmp/boegelbot/ETE/3.1.3/foss-2023b/ete3-3.1.3 | |
| == 2025-06-17 08:17:17,016 run.py:613 INFO Output of 'patch ...' shell command (stdout + stderr): | |
| patching file ete3/evol/evoltree.py | |
| Hunk #1 succeeded at 251 with fuzz 2 (offset 3 lines). | |
| == 2025-06-17 08:17:17,016 run.py:616 INFO Shell command completed successfully (see output above): patch -p1 -i /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.2-foss-2021b_fix_binpath.patch | |
| == 2025-06-17 08:17:17,016 build_log.py:322 INFO ... (took < 1 sec) | |
| == 2025-06-17 08:17:17,016 easyblock.py:4650 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False, skip_sanity_check: False) | |
| == 2025-06-17 08:17:17,016 build_log.py:322 INFO preparing... | |
| == 2025-06-17 08:17:17,016 easyblock.py:4659 INFO Starting prepare step | |
| == 2025-06-17 08:17:17,016 easyconfig.py:1812 INFO Generating template values... | |
| == 2025-06-17 08:17:17,017 templates.py:297 DEBUG config: ETE EasyConfig @ /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.3-foss-2023b.eb | |
| == 2025-06-17 08:17:17,017 templates.py:333 DEBUG version found in easyconfig is 3.1.3 | |
| == 2025-06-17 08:17:17,017 templates.py:433 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2025-06-17 08:17:17,017 templates.py:433 DEBUG name: github_account, config: %(namelower)s | |
| == 2025-06-17 08:17:17,017 templates.py:433 DEBUG name: name, config: ETE | |
| == 2025-06-17 08:17:17,017 templates.py:433 DEBUG name: version, config: 3.1.3 | |
| == 2025-06-17 08:17:17,017 templates.py:433 DEBUG name: versionsuffix, config: | |
| == 2025-06-17 08:17:17,017 templates.py:433 DEBUG name: versionprefix, config: | |
| == 2025-06-17 08:17:17,017 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2025-06-17 08:17:17,017 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2025-06-17 08:17:17,018 easyconfig.py:1831 INFO Template values: arch='x86_64', bitbucket_account='ete', builddir='/tmp/boegelbot/ETE/3.1.3/foss-2023b', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_cc_space_sep_no_period='80', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='ete', installdir='/project/def-maintainers/boegelbot/rocky9/zen3/software/ETE/3.1.3-foss-2023b', module_name='ETE/3.1.3-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='ETE', nameletter='E', nameletterlower='e', namelower='ete', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', rpath_enabled='true', software_commit='', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.1.3', version_major='3', version_major_minor='3.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2025-06-17 08:17:17,018 easyblock.py:4667 INFO Running method prepare_step part of step prepare | |
| == 2025-06-17 08:17:17,018 easyconfig.py:2863 DEBUG Determining initial module paths for ETE EasyConfig @ /tmp/eb-edmku9lp/files_pr22019/e/ETE/ETE-3.1.3-foss-2023b.eb | |
| == 2025-06-17 08:17:17,018 easyconfig.py:2865 DEBUG Obtained initial module paths: [] | |
| == 2025-06-17 08:17:17,018 easyconfig.py:1215 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'Python/3.11.5-GCCcore-13.2.0', 'short_mod_name': 'Python/3.11.5-GCCcore-13.2.0', 'name': 'Python', 'version': '3.11.5', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'SciPy-bundle/2023.11-gfbf-2023b', 'short_mod_name': 'SciPy-bundle/2023.11-gfbf-2023b', 'name': 'SciPy-bundle', 'version': '2023.11', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'lxml/4.9.3-GCCcore-13.2.0', 'short_mod_name': 'lxml/4.9.3-GCCcore-13.2.0', 'name': 'lxml', 'version': '4.9.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PyQt5/5.15.10-GCCcore-13.2.0', 'short_mod_name': 'PyQt5/5.15.10-GCCcore-13.2.0', 'name': 'PyQt5', 'version': '5.15.10', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
| == 2025-06-17 08:17:17,018 easyconfig.py:1218 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'Python/3.11.5-GCCcore-13.2.0', 'short_mod_name': 'Python/3.11.5-GCCcore-13.2.0', 'name': 'Python', 'version': '3.11.5', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'SciPy-bundle/2023.11-gfbf-2023b', 'short_mod_name': 'SciPy-bundle/2023.11-gfbf-2023b', 'name': 'SciPy-bundle', 'version': '2023.11', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'lxml/4.9.3-GCCcore-13.2.0', 'short_mod_name': 'lxml/4.9.3-GCCcore-13.2.0', 'name': 'lxml', 'version': '4.9.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PyQt5/5.15.10-GCCcore-13.2.0', 'short_mod_name': 'PyQt5/5.15.10-GCCcore-13.2.0', 'name': 'PyQt5', 'version': '5.15.10', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
| == 2025-06-17 08:17:17,018 toolchain.py:540 DEBUG _check_dependencies: adding toolchain dependencies [{'full_mod_name': 'Python/3.11.5-GCCcore-13.2.0', 'short_mod_name': 'Python/3.11.5-GCCcore-13.2.0', 'name': 'Python', 'version': '3.11.5', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'SciPy-bundle/2023.11-gfbf-2023b', 'short_mod_name': 'SciPy-bundle/2023.11-gfbf-2023b', 'name': 'SciPy-bundle', 'version': '2023.11', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'lxml/4.9.3-GCCcore-13.2.0', 'short_mod_name': 'lxml/4.9.3-GCCcore-13.2.0', 'name': 'lxml', 'version': '4.9.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PyQt5/5.15.10-GCCcore-13.2.0', 'short_mod_name': 'PyQt5/5.15.10-GCCcore-13.2.0', 'name': 'PyQt5', 'version': '5.15.10', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
| == 2025-06-17 08:17:17,018 toolchain.py:550 DEBUG _check_dependencies: MODULEPATH: /project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
| == 2025-06-17 08:17:17,019 modules.py:920 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', '--show-hidden')': ['4ti2/1.6.10-GCC-13.2.0', '4ti2/1.6.9-GCC-11.3.0', 'ABINIT/10.2.5-intel-2023a', 'ABINIT/9.6.2-foss-2022a', 'ABRicate/1.0.0-gompi-2023a', 'ABRicate/1.0.0-gompi-2023b', 'ABySS/2.3.7-foss-2023a', 'ACTC/1.1-GCCcore-12.3.0', 'AFNI/24.0.02-foss-2023a', 'AFNI/25.1.01-foss-2024a', 'AGAT/1.4.0-GCC-12.3.0', 'AICSImageIO/4.14.0-foss-2022a', 'AMICA/2024.1.19-intel-2023a', 'AMOS/3.1.0-foss-2021b', 'AMOS/3.1.0-foss-2023a', 'AMPtk/1.5.4-foss-2021b', 'AMRFinderPlus/3.11.18-gompi-2021b', 'AMRFinderPlus/3.12.8-gompi-2023a', 'ANIcalculator/1.0-GCCcore-11.3.0', 'ANTIC/0.2.5-gfbf-2022a', 'ANTLR/2.7.7-GCCcore-10.3.0-Java-11', 'ANTLR/2.7.7-GCCcore-11.3.0-Java-11', 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'virtualenv/20.29.2-GCCcore-14.2.0', 'visdom/0.2.4-foss-2022a', 'vispr/0.4.14-foss-2022a', 'vitessce-python/20230222-foss-2022a', 'vitessceR/0.99.0-20230110-foss-2022a-R-4.2.1', 'vsc-mympirun/5.3.0', 'vsc-mympirun/5.3.1', 'vsc-mympirun/5.4.0', 'vt/0.57721-GCC-11.2.0', 'waLBerla/6.1-foss-2022b', 'waLBerla/6.1-foss-2023a', 'waLBerla/6.1-foss-2023a-CUDA-12.1.1', 'wandb/0.13.4-GCCcore-11.3.0', 'wandb/0.16.1-GCC-12.3.0', 'weblogo/2.8.2-foss-2022b', 'webvtt-py/0.5.1-GCCcore-12.3.0', 'wfdb/4.1.2-foss-2022a', 'wget/1.21.1-GCCcore-10.3.0', 'wget/1.21.2-GCCcore-11.2.0', 'wget/1.21.3-GCCcore-11.3.0', 'wget/1.21.4-GCCcore-12.2.0', 'wget/1.21.4-GCCcore-13.2.0', 'wget/1.24.5-GCCcore-12.3.0', 'wget/1.24.5-GCCcore-13.2.0', 'wget/1.25.0-GCCcore-13.3.0', 'wgsim/20111017-GCC-11.2.0', 'whisper-ctranslate2/0.5.2-foss-2023a-CUDA-12.1.1', 'whisper-ctranslate2/0.5.2-foss-2023a-CUDA-12.6.0', 'worker/1.6.13-iimpi-2023a', 'wpebackend-fdo/1.13.1-GCCcore-11.2.0', 'wpebackend-fdo/1.14.1-GCCcore-11.3.0', 'wpebackend-fdo/1.15.90-GCCcore-12.3.0', 'wradlib/2.0.3-foss-2022a', 'wradlib/2.0.3-foss-2023a', 'wrapt/1.15.0-foss-2022a', 'wrapt/1.15.0-gfbf-2022b', 'wrapt/1.15.0-gfbf-2023a', 'wrapt/1.15.0-intel-2022a', 'wrapt/1.16.0-GCCcore-13.2.0', 'wrapt/1.16.0-gfbf-2023b', 'wrapt/1.16.0-gfbf-2024a', 'wrf-python/1.3.4.1-20241111-foss-2024a', 'wurlitzer/3.1.1-GCCcore-13.2.0', 'wxPython/4.2.1-foss-2022a', 'wxPython/4.2.1-foss-2023a', 'wxWidgets/3.1.5-GCC-10.3.0', 'wxWidgets/3.2.0-GCC-11.2.0', 'wxWidgets/3.2.1-GCC-11.3.0', 'wxWidgets/3.2.2.1-GCC-12.2.0', 'wxWidgets/3.2.2.1-GCC-12.3.0', 'wxWidgets/3.2.6-GCC-13.2.0', 'wxWidgets/3.2.6-GCC-13.3.0', 'x264/20210414-GCCcore-10.3.0', 'x264/20210613-GCCcore-11.2.0', 'x264/20220620-GCCcore-11.3.0', 'x264/20230226-GCCcore-12.2.0', 'x264/20230226-GCCcore-12.3.0', 'x264/20231019-GCCcore-13.2.0', 'x264/20240513-GCCcore-13.3.0', 'x265/3.5-GCCcore-10.3.0', 'x265/3.5-GCCcore-11.2.0', 'x265/3.5-GCCcore-11.3.0', 'x265/3.5-GCCcore-12.2.0', 'x265/3.5-GCCcore-12.3.0', 'x265/3.5-GCCcore-13.2.0', 'x265/3.6-GCCcore-13.3.0', 'xESMF/0.8.6-foss-2023a', 'xarray/0.20.1-foss-2021b', 'xarray/2022.6.0-foss-2022a', 'xarray/2023.4.2-gfbf-2022b', 'xarray/2023.8.0-gfbf-2023a', 'xarray/2023.9.0-gfbf-2023a', 'xarray/2024.11.0-gfbf-2024a', 'xarray/2024.5.0-gfbf-2023b', 'xclim/0.55.1-foss-2024a', 'xformers/0.0.23.post1-foss-2023a-CUDA-12.1.1', 'xmlf90/1.6.3-GCC-12.3.0', 'xmlf90/1.6.3-GCC-13.3.0', 'xmlto/0.0.28-GCCcore-12.3.0', 'xorg-macros/1.19.2-GCCcore-10.2.0', 'xorg-macros/1.19.2-GCCcore-9.3.0', 'xorg-macros/1.19.3-GCCcore-10.3.0', 'xorg-macros/1.19.3-GCCcore-11.2.0', 'xorg-macros/1.19.3-GCCcore-11.3.0', 'xorg-macros/1.19.3-GCCcore-12.2.0', 'xorg-macros/1.20.0-GCCcore-12.3.0', 'xorg-macros/1.20.0-GCCcore-13.2.0', 'xorg-macros/1.20.1-GCCcore-13.3.0', 'xorg-macros/1.20.2-GCCcore-14.2.0', 'xorg-macros/1.20.2-GCCcore-14.3.0', 'xpdf/4.04-GCCcore-12.3.0', 'xprop/1.2.5-GCCcore-10.3.0', 'xprop/1.2.5-GCCcore-11.3.0', 'xprop/1.2.6-GCCcore-12.3.0', 'xprop/1.2.7-GCCcore-13.2.0', 'xprop/1.2.8-GCCcore-13.3.0', 'xproto/7.0.31-GCCcore-13.2.0', 'xproto/7.0.31-GCCcore-13.3.0', 'xskillscore/0.0.26-foss-2023a', 'xtb-IFF/1.1', 'xtb/6.4.1-foss-2021b', 'xtb/6.4.1-intel-2021a', 'xtb/6.5.0-foss-2021b', 'xtb/6.6.0-foss-2022a', 'xtb/6.6.1-foss-2022b', 'xtb/6.6.1-gfbf-2022b', 'xtb/6.6.1-gfbf-2023a', 'xtb/6.7.0-gfbf-2023a', 'xtb/6.7.1-gfbf-2023b', 'xtensor/0.24.0-foss-2021b', 'xtensor/0.24.7-foss-2023a', 'xxHash/0.8.1-GCCcore-11.3.0', 'xxHash/0.8.1-GCCcore-12.2.0', 'xxHash/0.8.2-GCCcore-12.3.0', 'xxHash/0.8.2-GCCcore-13.2.0', 'xxd/8.2.4220-GCCcore-10.3.0', 'xxd/8.2.4220-GCCcore-11.2.0', 'xxd/8.2.4220-GCCcore-11.3.0', 'xxd/9.0.1696-GCCcore-12.2.0', 'xxd/9.0.2112-GCCcore-12.3.0', 'xxd/9.1.0307-GCCcore-13.2.0', 'xxd/9.1.0785-GCCcore-13.3.0', 'xxd/9.1.1275-GCCcore-13.3.0', 'xxd/9.1.1457-GCCcore-14.2.0', 'yMMSL-dot/0.1.2-GCCcore-13.2.0', 'yacrd/1.0.0-foss-2023a', 'yaff/1.6.0-foss-2023a', 'yaml-cpp/0.7.0-GCCcore-11.3.0', 'yaml-cpp/0.7.0-GCCcore-12.3.0', 'yaml-cpp/0.8.0-GCCcore-13.2.0', 'yaml-cpp/0.8.0-GCCcore-13.3.0', 'yell/2.2.2-GCC-12.3.0', 'yelp-tools/42.1-GCCcore-12.3.0', 'yelp-xsl/42.1-GCCcore-12.3.0', 'yt/4.3.0-foss-2022a', 'z5py/2.0.17-foss-2023a', 'zUMIs/2.9.7-foss-2023a-R-4.3.2', 'zarr/2.13.3-foss-2021b', 'zarr/2.13.3-foss-2022a', 'zarr/2.17.1-foss-2023a', 'zarr/2.18.3-foss-2023b', 'zarr/2.18.4-foss-2023b', 'zarr/2.18.4-foss-2024a', 'zfp/1.0.0-GCCcore-11.3.0', 'zfp/1.0.1-GCCcore-12.3.0', 'zfp/1.0.1-GCCcore-13.2.0', 'zlib-ng/2.0.7-GCCcore-11.3.0', 'zlib-ng/2.1.6-GCCcore-12.3.0', 'zlib-ng/2.2.1-GCCcore-12.3.0', 'zlib-ng/2.2.1-GCCcore-13.3.0', 'zlib-ng/2.2.2-GCCcore-13.2.0', 'zlib/1.2.11', 'zlib/1.2.11-GCCcore-10.2.0', 'zlib/1.2.11-GCCcore-10.3.0', 'zlib/1.2.11-GCCcore-11.2.0', 'zlib/1.2.11-GCCcore-9.3.0', 'zlib/1.2.12', 'zlib/1.2.12-GCCcore-11.3.0', 'zlib/1.2.12-GCCcore-12.1.0', 'zlib/1.2.12-GCCcore-12.2.0', 'zlib/1.2.13', 'zlib/1.2.13-GCCcore-12.3.0', 'zlib/1.2.13-GCCcore-13.1.0', 'zlib/1.2.13-GCCcore-13.2.0', 'zlib/1.2.8', 'zlib/1.3.1', 'zlib/1.3.1-GCCcore-13.3.0', 'zlib/1.3.1-GCCcore-14.1.0', 'zlib/1.3.1-GCCcore-14.2.0', 'zlib/1.3.1-GCCcore-14.3.0', 'zlib/1.3.1-GCCcore-15.1.0', 'zsh/5.9-GCCcore-13.3.0', 'zstd/1.4.4-GCCcore-9.3.0', 'zstd/1.4.5-GCCcore-10.2.0', 'zstd/1.4.9-GCCcore-10.3.0', 'zstd/1.5.0-GCCcore-11.2.0', 'zstd/1.5.2-GCCcore-11.3.0', 'zstd/1.5.2-GCCcore-12.2.0', 'zstd/1.5.5-GCCcore-12.3.0', 'zstd/1.5.5-GCCcore-13.2.0', 'zstd/1.5.6-GCCcore-13.3.0', 'zstd/1.5.6-GCCcore-14.2.0'] | |
| == 2025-06-17 08:17:17,022 modules.py:1053 INFO Checking whether Python/3.11.5-GCCcore-13.2.0 exists... | |
| == 2025-06-17 08:17:17,022 modules.py:1058 INFO Module Python/3.11.5-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2025-06-17 08:17:17,022 modules.py:1081 INFO Result for existence check of Python/3.11.5-GCCcore-13.2.0 module: True | |
| == 2025-06-17 08:17:17,022 modules.py:1053 INFO Checking whether SciPy-bundle/2023.11-gfbf-2023b exists... | |
| == 2025-06-17 08:17:17,022 modules.py:1058 INFO Module SciPy-bundle/2023.11-gfbf-2023b exists (found in list of available modules) | |
| == 2025-06-17 08:17:17,022 modules.py:1081 INFO Result for existence check of SciPy-bundle/2023.11-gfbf-2023b module: True | |
| == 2025-06-17 08:17:17,022 modules.py:1053 INFO Checking whether lxml/4.9.3-GCCcore-13.2.0 exists... | |
| == 2025-06-17 08:17:17,022 modules.py:1058 INFO Module lxml/4.9.3-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2025-06-17 08:17:17,022 modules.py:1081 INFO Result for existence check of lxml/4.9.3-GCCcore-13.2.0 module: True | |
| == 2025-06-17 08:17:17,023 modules.py:1053 INFO Checking whether PyQt5/5.15.10-GCCcore-13.2.0 exists... | |
| == 2025-06-17 08:17:17,023 modules.py:1060 INFO Module PyQt5/5.15.10-GCCcore-13.2.0 not found in list of available modules, checking via 'module show'... | |
| == 2025-06-17 08:17:17,023 modules.py:996 DEBUG Checking whether PyQt5/5.15.10-GCCcore-13.2.0 exists based on output of 'module show' | |
| == 2025-06-17 08:17:17,023 modules.py:1144 DEBUG Found cached result for 'module show PyQt5/5.15.10-GCCcore-13.2.0' with key '('MODULEPATH=/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', 'PyQt5/5.15.10-GCCcore-13.2.0')': | |
| == 2025-06-17 08:17:17,023 modules.py:1006 DEBUG Checking line '' to determine whether PyQt5/5.15.10-GCCcore-13.2.0 exists... | |
| == 2025-06-17 08:17:17,023 modules.py:1010 DEBUG Treating line '' as whitespace, so skipping it | |
| == 2025-06-17 08:17:17,023 modules.py:1074 INFO Module PyQt5/5.15.10-GCCcore-13.2.0 not found via module avail/show, checking whether it is a wrapper | |
| == 2025-06-17 08:17:17,024 modules.py:1081 INFO Result for existence check of PyQt5/5.15.10-GCCcore-13.2.0 module: False | |
| == 2025-06-17 08:17:17,026 build_log.py:226 ERROR EasyBuild encountered an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): Missing modules for dependencies (use --robot?): PyQt5/5.15.10-GCCcore-13.2.0 (at easybuild/easybuild-framework/easybuild/tools/toolchain/toolchain.py:576 in _check_dependencies) | |
| == 2025-06-17 08:17:17,026 build_log.py:322 INFO ... (took < 1 sec) | |
| == 2025-06-17 08:17:17,027 config.py:770 DEBUG software install path as specified by 'installpath' and 'subdir_software': /project/def-maintainers/boegelbot/rocky9/zen3/software | |
| == 2025-06-17 08:17:17,027 filetools.py:2120 INFO Removing lock /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_ETE_3.1.3-foss-2023b.lock... | |
| == 2025-06-17 08:17:17,027 filetools.py:403 INFO Path /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_ETE_3.1.3-foss-2023b.lock successfully removed. | |
| == 2025-06-17 08:17:17,027 filetools.py:2124 INFO Lock removed: /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_ETE_3.1.3-foss-2023b.lock | |
| == 2025-06-17 08:17:17,028 easyblock.py:383 INFO Closing log for application name ETE version 3.1.3 |
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