Roman Valls Guimera brainstorm

## anritsu_bootlog.txt
[25 Sep 2019 at 22:14:46]:
...->      max contiguous free space:  26,544,177,156 bytes
           # of files:    1,348
         # of folders:    133
     total bytes in files:    115,534 Kb
         # of lost chains:    0
   total bytes in lost chains:  0
Checking for log file (/card0/sys/evt/evt.log)
Purge old events: Found 11 events in the log
Initializing keypad driver

## anritsu_symbols_dump.py
#!/usr/bin/env python

import re
import csv
import telnetlib
from collections import defaultdict

## EXAMPLE FROM MS2721B telnet session
TEST_PAYLOAD='''lkAddr 0\r\n0x0c002000 _usrEntry                 text    \r\n0x0c002040 _sysInit                  text    \r\n0x0c002064 _intPrioTable             text    \r\n0x0c0
 0216c _intPrioTableSize         text    \r\n0x0c002180 _ataDrv                   text    \r\n0x0c002e40 _ataDevCreate             text    \r\n0x0c0030c0 _ataRawio

## Makefile
all:
        ${CC} -g -Wall -I. -L. -I../rust-htslib/hts-sys/htslib -L../rust-htslib/hts-sys/htslib -I/usr/local/opt/bzip2/include -I/usr/local/Cellar/curl-openssl/7.68.0/include -I/usr/local/Cellar/xz/5.2.4/include -I/usr/local/opt/zlib/include s3_htslib.c -o s3_htslib -llzma -lz -lbz2 -lhts

clean:
        rm s3_htslib

## htsget-openapi-factored.yaml
openapi: 3.0.0
servers:
  - description: htsget genomics api
    url: https://virtserver.swaggerhub.com/brainkod/htsget/1.1.1
info:
  description: "This data retrieval API bridges from existing genomics bulk data transfers to a client/server model"
  version: "1.1.1"
  title: htsget
  contact:
    name: GA4GH

## igv_server_setup.md

      
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                brainstorm
                / igv_server_setup.md
            
            
              Created
              February 14, 2019 02:41
            
              
                IGV HTTP server setup
              
          
    Minimal NGINX configuration on the server side

WARNING: These notes are going to be eliminated by automation anytime soon (see Future section below).
Edit the file under /etc/nginx/sites-available/default to make sure it looks like this (read SSL section below for the encryption bits):
server {
        auth_basic "UMCCR AWS IGV Server";
        auth_basic_user_file /etc/nginx/htpasswd;


## igv_regenerate.sh
#!/bin/bash
##### CONFIG
S3FUSE_MNT=/mnt/igv
IGV_NGINX_MNT=/var/www/igv
IGV_XML_HEAD="<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<Global name=\"UMCCR AWS IGV server\" version=\"1\">\n<Category name=\"UMCCR Amazon IGV bucket\">"
IGV_XML_BODY_TMPL="<Resource name=\"SAMPLE\" path=\"URL\"></Resource>\n"
IGV_XML_TAIL="</Category>\n</Global>\n"

IGV_XML_BODY_ARRAY=()

## esc_motor_pseudo.c
#include <stdint.h>
#include <limits.h>

#define DISABLE_INTERRUPTS __asm(cli)
#define ENABLE_INTERRUPTS __asm(sei)

#define MEM_X ((uint16_t*)((r27 << 8) | r26))
#define MEM_Y ((uint16_t*)((r29 << 8) | r28))
#define MEM_Z ((uint16_t*)((r31 << 8) | r30))

## openscad_trolley.scad
/*

This is a titan bags (https://www.titan-bags.com/) custom part replacement. This piece goes inside the
"telescopic" handle bar after removing two screws. The mechanism is brittle and breaks with repeated
pressure to the main button, leading to an "always locked" position of the telescopic bars.

I've printed this part successfully with PETG 3D printing material via http://3dhubs.com.

*/

## XHC Mach3 CNC USB comms dump.ipynb

      
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                brainstorm
                / XHC Mach3 CNC USB comms dump.ipynb
            
            
              Last active
              March 26, 2018 06:30
            
              
                CNC Machine USBLyzer CSV dump for http://www.nvcnc.net/xhc-cnc-controller.html
              
          
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## pcgr.service
(venv) ubuntu@localhost:/etc/systemd/system$ sudo cat pcgr.service
[Unit]
Description=PCGR sample consumer process
After=network-online.target

[Service]
Type=simple
WorkingDirectory=/home/ubuntu
ExecStart=/mnt/pcgr/venv/bin/python3 /mnt/pcgr/pcgr_consumer.py pcgr ap-southeast-2 pcgr 10 10 /home/ubuntu
	[25 Sep 2019 at 22:14:46]:
	...-> max contiguous free space: 26,544,177,156 bytes
	# of files: 1,348
	# of folders: 133
	total bytes in files: 115,534 Kb
	# of lost chains: 0
	total bytes in lost chains: 0
	Checking for log file (/card0/sys/evt/evt.log)
	Purge old events: Found 11 events in the log
	Initializing keypad driver
	#!/usr/bin/env python

	import re
	import csv
	import telnetlib
	from collections import defaultdict

	## EXAMPLE FROM MS2721B telnet session
	TEST_PAYLOAD='''lkAddr 0\r\n0x0c002000 _usrEntry text \r\n0x0c002040 _sysInit text \r\n0x0c002064 _intPrioTable text \r\n0x0c0
	0216c _intPrioTableSize text \r\n0x0c002180 _ataDrv text \r\n0x0c002e40 _ataDevCreate text \r\n0x0c0030c0 _ataRawio
	all:
	${CC} -g -Wall -I. -L. -I../rust-htslib/hts-sys/htslib -L../rust-htslib/hts-sys/htslib -I/usr/local/opt/bzip2/include -I/usr/local/Cellar/curl-openssl/7.68.0/include -I/usr/local/Cellar/xz/5.2.4/include -I/usr/local/opt/zlib/include s3_htslib.c -o s3_htslib -llzma -lz -lbz2 -lhts

	clean:
	rm s3_htslib
	openapi: 3.0.0
	servers:
	- description: htsget genomics api
	url: https://virtserver.swaggerhub.com/brainkod/htsget/1.1.1
	info:
	description: "This data retrieval API bridges from existing genomics bulk data transfers to a client/server model"
	version: "1.1.1"
	title: htsget
	contact:
	name: GA4GH
	#!/bin/bash
	##### CONFIG
	S3FUSE_MNT=/mnt/igv
	IGV_NGINX_MNT=/var/www/igv
	IGV_XML_HEAD="<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<Global name=\"UMCCR AWS IGV server\" version=\"1\">\n<Category name=\"UMCCR Amazon IGV bucket\">"
	IGV_XML_BODY_TMPL="<Resource name=\"SAMPLE\" path=\"URL\"></Resource>\n"
	IGV_XML_TAIL="</Category>\n</Global>\n"

	IGV_XML_BODY_ARRAY=()
	#include <stdint.h>
	#include <limits.h>

	#define DISABLE_INTERRUPTS __asm(cli)
	#define ENABLE_INTERRUPTS __asm(sei)

	#define MEM_X ((uint16_t*)((r27 << 8) \| r26))
	#define MEM_Y ((uint16_t*)((r29 << 8) \| r28))
	#define MEM_Z ((uint16_t*)((r31 << 8) \| r30))
	/*

	This is a titan bags (https://www.titan-bags.com/) custom part replacement. This piece goes inside the
	"telescopic" handle bar after removing two screws. The mechanism is brittle and breaks with repeated
	pressure to the main button, leading to an "always locked" position of the telescopic bars.

	I've printed this part successfully with PETG 3D printing material via http://3dhubs.com.

	*/
	(venv) ubuntu@localhost:/etc/systemd/system$ sudo cat pcgr.service
	[Unit]
	Description=PCGR sample consumer process
	After=network-online.target

	[Service]
	Type=simple
	WorkingDirectory=/home/ubuntu
	ExecStart=/mnt/pcgr/venv/bin/python3 /mnt/pcgr/pcgr_consumer.py pcgr ap-southeast-2 pcgr 10 10 /home/ubuntu