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#compile source on Flux | |
module load matlab/2014a | |
mcc -m implicitthreads.m |
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"message" => "[3743] Wed Jul 16 09:34:54 2014 :: Transfer stats: DATE=20140716133454.587582 HOST=flux-xfer1.engin.umich.edu PROG=globus-gridftp-server NL.EVNT=FTP_INFO START=20140716133453.570157 USER=brockp FILE=/tmp/brockp/linux_x64_64_sfx.exe BUFFER=87380 BLOCK=262144 NBYTES=280590752 VOLUME=/ STREAMS=4 STRIPES=1 DEST=[141.212.30.10] TYPE=RETR CODE=226", |
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tar -xjf gt<version>-all-source-installer.tar.bz2 | |
cd gt<version>-all-source-installer | |
./configure --prefix=/home/brockp/gt5.0.4 | |
make globus-data-management-client | |
make gsi-myproxy | |
make install |
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#build hydra with PBS support | |
wget http://www.mpich.org/static/downloads/3.1/hydra-3.1.tar.gz | |
tar -xzf hydra-3.1.tar.gz | |
cd hydra-3.1 | |
#configure with needed path to libtroque.so | |
#<toque install prefix>/lib/libtroque.so | |
./configure \ | |
--prefix=<install prefix> \ | |
--with-toque=<torque install prefix> \ |
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#create an ssh tunnel vis flux-xfer to the machine with our VNC Display. | |
#this example works for Mac, Linux, and Cygwin | |
#find your vnchost and display number: | |
ls -rt ~/.vnc/ | |
# eg: nyx5330.engin.umich.edu:1.log | |
# eg: nyx5330.engin.umich.edu <== host running vnc | |
# eg: 1 <== display number |
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#PBS -N jobname | |
#PBS -A account_flux | |
#PBS -l qos=flux | |
#PBS -l walltime=1:00:00,nodes=1:ppn=12,pmem=3800mb | |
#PBS -q flux | |
#PBS -V | |
#brockp@umich.edu | |
#3/2014 |
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;----------------------------------------------------------------------------; | |
; Globus User Configuration | |
;----------------------------------------------------------------------------; | |
; These settings configure how to contact Globus when | |
; creating or modifying an endpoint. | |
[Globus] | |
; Globus user name. If not set, or left at its default, then the | |
; value of GLOBUS_USER environment variable is used, falling back to | |
; prompting if it is not present. |
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%Brock Palen brockp@umich.edu 1/2014 | |
%To compare against a single core run: | |
% hwloc-bind core:0 matlab -r gen\(1e4\) #first core | |
% hwloc-bind socket:0 matlab -r gen\(1e4\) #first socket all cores | |
function gen(dim) | |
if ischar(dim) | |
dim=str2num(dim); | |
end |
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