Created
May 29, 2020 13:14
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| Not working 3.4.3: | |
| conda activate env-88033d724551c454e7407016525c652d/ | |
| (/mnt/flash_scratch/nextflow_conda/env-88033d724551c454e7407016525c652d) [langhorst@login-0-0 nextflow_conda]$ bamCompare | |
| Traceback (most recent call last): | |
| File "/mnt/flash_scratch/nextflow_conda/env-88033d724551c454e7407016525c652d/bin/bamCompare", line 5, in <module> | |
| from deeptools.bamCompare import main | |
| File "/mnt/flash_scratch/nextflow_conda/env-88033d724551c454e7407016525c652d/lib/python3.6/site-packages/deeptools/bamCompare.py", line 9, in <module> | |
| from deeptools import writeBedGraph | |
| File "/mnt/flash_scratch/nextflow_conda/env-88033d724551c454e7407016525c652d/lib/python3.6/site-packages/deeptools/writeBedGraph.py", line 9, in <module> | |
| from deeptools.utilities import getCommonChrNames | |
| File "/mnt/flash_scratch/nextflow_conda/env-88033d724551c454e7407016525c652d/lib/python3.6/site-packages/deeptools/utilities.py", line 4, in <module> | |
| from deeptools.bamHandler import openBam | |
| File "/mnt/flash_scratch/nextflow_conda/env-88033d724551c454e7407016525c652d/lib/python3.6/site-packages/deeptools/bamHandler.py", line 2, in <module> | |
| import pysam | |
| File "/mnt/flash_scratch/nextflow_conda/env-88033d724551c454e7407016525c652d/lib/python3.6/site-packages/pysam/__init__.py", line 5, in <module> | |
| from pysam.libchtslib import * | |
| ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory | |
| # packages in environment at /mnt/flash_scratch/nextflow_conda/env-88033d724551c454e7407016525c652d: | |
| # | |
| # Name Version Build Channel | |
| _libgcc_mutex 0.1 conda_forge conda-forge | |
| _openmp_mutex 4.5 1_llvm conda-forge | |
| bcftools 1.8 h4da6232_3 bioconda | |
| bzip2 1.0.8 h516909a_2 conda-forge | |
| ca-certificates 2020.4.5.1 hecc5488_0 conda-forge | |
| certifi 2020.4.5.1 py36h9f0ad1d_0 conda-forge | |
| curl 7.69.1 h33f0ec9_0 conda-forge | |
| cycler 0.10.0 py_2 conda-forge | |
| deeptools 3.4.3 py_0 bioconda | |
| deeptoolsintervals 0.1.9 py36h8c4c3a4_1 bioconda | |
| freetype 2.10.2 he06d7ca_0 conda-forge | |
| htslib 1.7 0 bioconda | |
| icu 64.2 he1b5a44_1 conda-forge | |
| kiwisolver 1.2.0 py36hdb11119_0 conda-forge | |
| krb5 1.17.1 h2fd8d38_0 conda-forge | |
| ld_impl_linux-64 2.34 h53a641e_4 conda-forge | |
| libblas 3.8.0 16_openblas conda-forge | |
| libcblas 3.8.0 16_openblas conda-forge | |
| libcurl 7.69.1 hf7181ac_0 conda-forge | |
| libdeflate 1.6 h516909a_0 conda-forge | |
| libedit 3.1.20170329 hf8c457e_1001 conda-forge | |
| libffi 3.2.1 he1b5a44_1007 conda-forge | |
| libgcc 7.2.0 h69d50b8_2 conda-forge | |
| libgcc-ng 9.2.0 h24d8f2e_2 conda-forge | |
| libgfortran-ng 7.5.0 hdf63c60_6 conda-forge | |
| liblapack 3.8.0 16_openblas conda-forge | |
| libopenblas 0.3.9 h5ec1e0e_0 conda-forge | |
| libpng 1.6.37 hed695b0_1 conda-forge | |
| libssh2 1.9.0 hab1572f_2 conda-forge | |
| libstdcxx-ng 9.2.0 hdf63c60_2 conda-forge | |
| llvm-openmp 10.0.0 hc9558a2_0 conda-forge | |
| matplotlib-base 3.2.1 py36hb8e4980_0 conda-forge | |
| ncurses 6.1 hf484d3e_1002 conda-forge | |
| numpy 1.18.4 py36h7314795_0 conda-forge | |
| openssl 1.1.1g h516909a_0 conda-forge | |
| pip 20.1.1 py_1 conda-forge | |
| plotly 4.8.0 pyh9f0ad1d_0 conda-forge | |
| py2bit 0.3.0 py36h8c4c3a4_3 bioconda | |
| pybigwig 0.3.17 py36h1b7067a_1 bioconda | |
| pyparsing 2.4.7 pyh9f0ad1d_0 conda-forge | |
| pysam 0.14.1 py36hae42fb6_1 bioconda | |
| python 3.6.10 h8356626_1011_cpython conda-forge | |
| python-dateutil 2.8.1 py_0 conda-forge | |
| python_abi 3.6 1_cp36m conda-forge | |
| readline 8.0 hf8c457e_0 conda-forge | |
| retrying 1.3.3 py_2 conda-forge | |
| samtools 1.7 1 bioconda | |
| scipy 1.4.1 py36h2d22cac_3 conda-forge | |
| setuptools 47.1.0 py36h9f0ad1d_0 conda-forge | |
| six 1.15.0 pyh9f0ad1d_0 conda-forge | |
| sqlite 3.30.1 hcee41ef_0 conda-forge | |
| tk 8.6.10 hed695b0_0 conda-forge | |
| tornado 6.0.4 py36h8c4c3a4_1 conda-forge | |
| wheel 0.34.2 py_1 conda-forge | |
| xz 5.2.5 h516909a_0 conda-forge | |
| zlib 1.2.11 h516909a_1006 conda-forge | |
| Working 3.3.2 | |
| # packages in environment at /mnt/flash_scratch/nextflow_conda/env-5b72c836001a26854dc4519399aab4c0: | |
| # | |
| # Name Version Build Channel | |
| _libgcc_mutex 0.1 conda_forge conda-forge | |
| _openmp_mutex 4.5 0_gnu conda-forge | |
| bzip2 1.0.8 h516909a_2 conda-forge | |
| ca-certificates 2019.11.28 hecc5488_0 conda-forge | |
| certifi 2019.11.28 py37_0 conda-forge | |
| curl 7.65.3 hf8cf82a_0 conda-forge | |
| cycler 0.10.0 py_2 conda-forge | |
| deeptools 3.3.2 py_1 bioconda | |
| deeptoolsintervals 0.1.9 py37h516909a_0 bioconda | |
| freetype 2.10.0 he983fc9_1 conda-forge | |
| icu 64.2 he1b5a44_1 conda-forge | |
| kiwisolver 1.1.0 py37hc9558a2_0 conda-forge | |
| krb5 1.16.4 h2fd8d38_0 conda-forge | |
| ld_impl_linux-64 2.33.1 h53a641e_7 conda-forge | |
| libblas 3.8.0 14_openblas conda-forge | |
| libcblas 3.8.0 14_openblas conda-forge | |
| libcurl 7.65.3 hda55be3_0 conda-forge | |
| libdeflate 1.5 h516909a_0 conda-forge | |
| libedit 3.1.20170329 hf8c457e_1001 conda-forge | |
| libffi 3.2.1 he1b5a44_1006 conda-forge | |
| libgcc-ng 9.2.0 h24d8f2e_2 conda-forge | |
| libgfortran-ng 7.3.0 hdf63c60_4 conda-forge | |
| libgomp 9.2.0 h24d8f2e_2 conda-forge | |
| liblapack 3.8.0 14_openblas conda-forge | |
| libopenblas 0.3.7 h5ec1e0e_6 conda-forge | |
| libpng 1.6.37 hed695b0_0 conda-forge | |
| libssh2 1.8.2 h22169c7_2 conda-forge | |
| libstdcxx-ng 9.2.0 hdf63c60_2 conda-forge | |
| matplotlib-base 3.1.2 py37h250f245_1 conda-forge | |
| ncurses 6.1 hf484d3e_1002 conda-forge | |
| numpy 1.17.5 py37h95a1406_0 conda-forge | |
| openssl 1.1.1d h516909a_0 conda-forge | |
| pip 20.0.2 py37_0 conda-forge | |
| plotly 4.5.0 py_0 conda-forge | |
| py2bit 0.3.0 py37h14c3975_2 bioconda | |
| pybigwig 0.3.17 py37hc013797_0 bioconda | |
| pyparsing 2.4.6 py_0 conda-forge | |
| pysam 0.15.4 py37hbcae180_0 bioconda | |
| python 3.7.6 h357f687_2 conda-forge | |
| python-dateutil 2.8.1 py_0 conda-forge | |
| readline 8.0 hf8c457e_0 conda-forge | |
| retrying 1.3.3 py_2 conda-forge | |
| scipy 1.4.1 py37h921218d_0 conda-forge | |
| setuptools 45.1.0 py37_0 conda-forge | |
| six 1.14.0 py37_0 conda-forge | |
| sqlite 3.30.1 hcee41ef_0 conda-forge | |
| tk 8.6.10 hed695b0_0 conda-forge | |
| tornado 6.0.3 py37h516909a_0 conda-forge | |
| wheel 0.34.1 py37_0 conda-forge | |
| xz 5.2.4 h14c3975_1001 conda-forge | |
| zlib 1.2.11 h516909a_1006 conda-forge |
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