Docker is a tool for bundling together applications and their dependencies into images that can than be run as containers on many different types of computers.
Docker and other containerization tools are useful to scientists because:
October 7, 2016
Casey Dunn, http://dunnlab.org , @caseywdunn
These are some notes and annotated references from my talk at the Boston Evolutionary Genomics Supergroup Meeting.
| # Setting up virtualenv on macOS Yosemite | |
| brew update | |
| brew upgrade | |
| which python # check location of system version | |
| brew install python | |
| brew install freetype # Needed by some python packages | |
| brew install libxml2 # Needed by some python packages | |
| pip install virtualenv virtualenvwrapper pytest |
| ( | |
| Ctenophora, | |
| ( | |
| Porifera, | |
| ( | |
| Placozoa, | |
| ( | |
| Cnidaria, | |
| ( | |
| Xenacoelomorpha, |
| # This is a full set of commands to install [Agalma](https://bitbucket.org/caseywdunn/agalma) | |
| # from the on Ubuntu Server from the tarballs. It has been tested on the AWS Ubuntu Server AMI. | |
| # | |
| sudo apt-get update | |
| sudo apt-get install make | |
| wget https://bitbucket.org/caseywdunn/biolite/raw/master/install_biolite_ubuntu.sh | |
| sudo sh install_biolite_ubuntu.sh | |
| wget https://bitbucket.org/caseywdunn/agalma/raw/master/install_agalma_ubuntu.sh |