Instantly share code, notes, and snippets.

Embed
What would you like to do?
BIG meeting at MIT: bcbio and common workflow language
Topic: MIT BIG meeting: bcbio and CWL (http://openwetware.org/wiki/BioMicroCenter:BIG_meeting)
Time: Nov 2, 2017 11:00 AM (GMT-4:00) Eastern Time (US and Canada)
Location: MIT Koch Biology Building 68-156 (http://whereis.mit.edu/?go=68) or online
Online: https://zoom.us/j/223311944
Telephone: US: +1 646 876 9923 or +1 669 900 6833 or +1 408 638 0968 or international https://zoom.us/zoomconference?m=qoCDInqg9wlWdANSN9knRp5E41dRbRhy
Meeting ID: 223 311 944
Recording: https://youtu.be/nJEDS9Qol8M
Slides: https://github.com/chapmanb/bcbb/blob/master/talks/big2017_bcbio_cwl/big2017_bcbio_cwl.pdf

Blue Collar Bioinformatics (bcbio; http://bcb.io/) is community developed methods for variant calling, RNA-seq, small RNA and ChiP-seq analyses. We work together to build openly available, practical, validated tools for working with high throughput sequencing data.

At the MIT BIG meeting I'll provide a followup on our proposals last year to move bcbio to use Common Workflow Language (CWL; http://www.commonwl.org/) for describing workflows. We run full workflows across multiple environments using CWL and will discuss:

We support bcbio CWL development at the Harvard Chan Bioinformatics core (http://bioinformatics.sph.harvard.edu/) through collaborations with AstraZeneca Oncology (https://www.astrazeneca.com/our-focus-areas/oncology.html), AstraZeneca Centre for Genomics Research (https://www.astrazeneca.com/Harnessing-the-code-of-life-to-develop-new-treatments.html), The University of Melbourne Centre for Cancer Research (https://www.victorianccc.org.au/) and Veritas (https://www.veritasgenetics.com/).

You're welcome to attend in person at MIT if you're in the Boston area. The presentation will also be online through Zoom for remote participation and we'll record the talk and make it available.

@jasper1918

This comment has been minimized.

jasper1918 commented Oct 31, 2017

s/2016/2017/g

@chapmanb

This comment has been minimized.

Owner

chapmanb commented Nov 2, 2017

Jeff -- thanks much for catching the typo.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment