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Shing Wan Choi choishingwan

  • Mount Sinai
  • New York
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View handle_meta.nf
import java.util.ArrayList;
def reformat_meta(input, index, column){
def arrayItems = []
if(input instanceof nextflow.util.ArrayTuple){
arrayItems = new java.util.ArrayList(input)
}else{
arrayItems = input.clone()
}
def meta = arrayItems.remove(index)
View programs.txt
bcbio-nextgen,0.7.3
htseq,0.5.4p1
bamtools,2.2.3
bedtools,v2.17.0
bowtie2,2.0.0-beta5
bwa,0.7.5a-r405
cufflinks,v2.0.0
cutadapt,
fastqc,v0.10.1
freebayes,v0.9.9.2-14-g8e44a20-dirty