ctrueden

Started application as PID 272117
imagej-launcher version bigger that non-working version (6.0.1 vs. 4.0.5), all good.
This is sciview / scenery, development version ( /  (9877ce))
Resetting language to Python
WARNING did not load JythonAutoCompletions
Loaded Deferred Shading (Deferred Shading, with HDR postprocessing and FXAA)
Creating Vulkan instance with extensions VK_KHR_xlib_surface,VK_KHR_surface and layers 
Physical devices: 
  0: Nvidia NVIDIA GeForce GT 1030 (DiscreteGPU, driver version 470.252.64, Vulkan API 1.2.175) (selected)
  1: (Unknown vendor) llvmpipe (LLVM 12.0.0, 256 bits) (CPU, driver version 0.0.1, Vulkan API 1.0.2) 

ctrueden

#!/usr/bin/perl

#
# maven-cp.pl
#

# A script to output a Java classpath for the given Maven GAVs,
# including their dependencies.

# Requires command line mvn to be installed.

ctrueden

#@ CommandService cs
#@ ModuleService ms
#@ ScriptService ss

modules = ms.getModules() // get all modules!
future = ms.run(modules[0], true, listOrMapOfArguments)
// if you want to block till completion:
m = future.get()
outputs = m.getOutputs() // is a dict

ctrueden

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>

	<parent>
		<groupId>org.scijava</groupId>
		<artifactId>pom-scijava</artifactId>
		<version>29.2.0</version>
		<relativePath />
	</parent>

ctrueden

$ conda create -n gh-pages rb-github-pages
...
$ conda activate gh-pages
$ conda list
# packages in environment at /usr/local/miniconda3/envs/gh-pages:
#
# Name                    Version                   Build  Channel
ca-certificates           2019.6.16            hecc5488_0    conda-forge
gdbm                      1.18                 h0da4bb5_1    conda-forge
gettext                   0.19.8.1          h46ab8bc_1002    conda-forge

ctrueden

jars/api-common-1.8.1.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/api-common-1.9.0.jar)
jars/auto-value-annotations-1.7.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/auto-value-annotations-1.7.jar)
jars/aws-java-sdk-core-1.11.719.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/aws-java-sdk-core-1.11.796.jar)
jars/aws-java-sdk-kms-1.11.719.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/aws-java-sdk-kms-1.11.796.jar)
jars/aws-java-sdk-s3-1.11.719.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/aws-java-sdk-s3-1.11.796.jar)
jars/commons-compress-1.19.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/commons-compress-1.20.jar)
jars/error_prone_annotations-2.3.4.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/error_prone_annotations-2.3.4.jar)
jars/gax-1.54.0.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/gax-1.56.0.jar)
jars/gax-httpjson-0.71.0.jar -- IS OBSOLETE (Java-8 file is: Fiji-Pristine.app/jars/gax-httpjson-0.73.

ctrueden

   2 ca.mcgill:Sholl_Analysis:3.6.13
   1 ca.mcgill:Sholl_Analysis:3.6.2
   1 ca.mcgill:Sholl_Analysis:3.7.4
   1 ca.mcgill:Sholl_Analysis:4.0.1
   1 ch.unibas.biozentrum.imcf:imcf-fiji-toolbars:2.0.2
  24 com.github.jeanollion.bacmman:bacmman-core:2.2.4
   2 com.github.jeanollion.bacmman:bacmman-core:2.2.5
   5 com.github.jeanollion.bacmman:bacmman-core:2.2.9
   2 com.github.jeanollion.bacmman:bacmman-core:v2.2.1
   1 com.github.jeanollion.bacmman:bacmman-core:v2.2.2

ctrueden

diff --git a/curtis-deps.txt b/tobias-deps.txt
index 11c28a1..cd26f14 100644
--- a/curtis-deps.txt
+++ b/tobias-deps.txt
@@ -111,6 +111,71 @@
 [INFO] +- net.imagej:imagej-notebook:jar:0.7.1:compile
 [INFO] |  \- org.knowm.xchart:xchart:jar:3.5.4:compile
 [INFO] |     \- de.erichseifert.vectorgraphics2d:VectorGraphics2D:jar:0.13:compile
+[INFO] +- net.imagej:imagej-omero:jar:0.8.1:compile
+[INFO] |  \- omero:blitz:jar:5.4.9-ice36-b101:compile

ctrueden

#@ LUTService lut
#@ DatasetView dv
#@ boolean verbose

def printColorTable = { t ->
	if (t == null) {
		println(" null")
		return
	}
	for (comp = 0; comp < t.getComponentCount(); comp++) {

ctrueden

WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by org.openjdk.jmh.util.Utils (file:/Users/curtis/code/imglib/imglib2/target/dependency/jmh-core-1.19.jar) to field java.io.PrintStream.charOut
WARNING: Please consider reporting this to the maintainers of org.openjdk.jmh.util.Utils
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release
# JMH version: 1.19
# VM version: JDK 11.0.2, VM 11.0.2+9
# VM invoker: /Library/Java/JavaVirtualMachines/adoptopenjdk-11.jdk/Contents/Home/bin/java
# VM options: -XX:+UnlockExperimentalVMOptions -XX:+EnableJVMCI -XX:+UseJVMCICompiler
# Warmup: 4 iterations, 200 ms each