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/*
 * Is your Fiji installation's Plugins menu too tall on Linux,
 * where it runs past the bottom of your screen?
 * Here is a hacky script to shrink the font, so that you can
 * fit more items before running out of screen real estate!
 *
 * License: CC0
 */

#@ Float squashFactor (value=0.75f)

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Operation	IntelliJ calls it	IntelliJ (Win/Linux)	IntelliJ (macOS)	Eclipse calls it	Eclipse (Win/Linux)	Eclipse (macOS)
Look up where a variable or class is actually used/referenced	Find usages	alt+shift+7	alt+F7	Global lookup	ctrl+shift+G	cmd+shift+G
Move the cursor to the next compile error or warning	Jump to next problem	F2	F2	Next	ctrl+.	cmd+.
Show recommended fixes for the selected problem	Pop up context actions	alt+enter	alt+enter	Show quick fixes	ctrl+1

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package net.imglib2.mesh.alg;

import java.io.IOException;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.function.BiConsumer;

import net.imglib2.Localizable;
import net.imglib2.mesh.io.ply.PLYMeshIO;

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import java.io.File;
import java.io.IOException;

import net.imagej.Dataset;
import net.imagej.ImageJ;
import net.imagej.mesh.Mesh;
import net.imagej.mesh.io.ply.PLYMeshIO;
import net.imagej.ops.OpService;
import net.imglib2.RandomAccessibleInterval;
import net.imglib2.converter.Converters;

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#@ DatasetService ds
#@ net.imagej.units.UnitService units
#@ UIService ui

// Parameters to play with!

// log-linear equation: cal(raw) = a + b * ln(c + d*raw)
xa = 0; xb = 10; xc = 1; xd = 1   // cal(xRaw) = 10*ln(1+xRaw)
ya = 0; yb = 5000; yc = 1; yd = 3000 // cal(yRaw) = 5000*ln(1+3000*yRaw)
// units

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Background and Context

We have a set of many components (software libraries and/or applications) known as a Bill of Materials (BOM). Many of these components depend on other components, forming a dependency graph (no cycles).

These components are under active development, with new versions being released over time. The BOM lists each component at a specific version, with the idea that all components of the BOM will work successfully together when used as dependencies of a derivative work.

For example, suppose we have the following components:

• Guava v21 ← no dependencies
• Math v1 ← depends on Guava v21

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#!/usr/env/bin python

# Generate pyramidal OME-TIFF.
# Adapted from:
# https://github.com/ome/bio-formats-examples/blob/88d3f109093fb3350242061b00624af001f495e8/src/main/java/GeneratePyramidResolutions.java#L39-L43

import sys

import scyjava

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Started application as PID 272117
imagej-launcher version bigger that non-working version (6.0.1 vs. 4.0.5), all good.
This is sciview / scenery, development version ( /  (9877ce))
Resetting language to Python
WARNING did not load JythonAutoCompletions
Loaded Deferred Shading (Deferred Shading, with HDR postprocessing and FXAA)
Creating Vulkan instance with extensions VK_KHR_xlib_surface,VK_KHR_surface and layers 
Physical devices: 
  0: Nvidia NVIDIA GeForce GT 1030 (DiscreteGPU, driver version 470.252.64, Vulkan API 1.2.175) (selected)
  1: (Unknown vendor) llvmpipe (LLVM 12.0.0, 256 bits) (CPU, driver version 0.0.1, Vulkan API 1.0.2) 

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#@ CommandService cs
#@ ModuleService ms
#@ ScriptService ss

modules = ms.getModules() // get all modules!
future = ms.run(modules[0], true, listOrMapOfArguments)
// if you want to block till completion:
m = future.get()
outputs = m.getOutputs() // is a dict

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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>

	<parent>
		<groupId>org.scijava</groupId>
		<artifactId>pom-scijava</artifactId>
		<version>29.2.0</version>
		<relativePath />
	</parent>