dandanxu

dandanxu

#  ---------------------------------------------------------------------------
#
#  Description:  This file holds all my BASH configurations and aliases
#
#  Sections:
#  1.   Environment Configuration
#  2.   Make Terminal Better (remapping defaults and adding functionality)
#  3.   File and Folder Management
#  4.   Searching
#  5.   Process Management

dandanxu

#’ Create a Kaplan-Meier plot using ggplot2
#’
#’ @param sfit a \code{\link[survival]{survfit}} object
#’ @param returns logical: if \code{TRUE}, return an ggplot object
#’ @param xlabs x-axis label
#’ @param ylabs y-axis label
#’ @param ystratalabs The strata labels. \code{Default = levels(summary(sfit)$strata)}
#’ @param ystrataname The legend name. Default = “Strata”
#’ @param timeby numeric: control the granularity along the time-axis
#’ @param main plot title

dandanxu

print '\nBuongiorno\n'

print "WELCOME! This script will take sequenom data and make plink files"

resultsFile = open("mappedSeqResults.txt", "r")
resultsMatrix = [[0 for col in range(0)] for row in range(0)]

for line in resultsFile:
	inputInfo = line.split()
	resultsMatrix.append(inputInfo)