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## save our current directory so we can return to it | |
CURDIR=$(pwd) | |
## find the path to our conda bin dir (this _should_ be in our PATH) | |
CONDADIR=$(which conda) | |
CONDABIN=$(dirname $CONDADIR) | |
CONDAPKG=$(dirname $CONDABIN)/pkgs | |
## download linux CLUMPP into the conda pkgs dir | |
cd $CONDAPKG/ |
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## save our current directory so we can return to it | |
CURDIR=$(pwd) | |
## find the path to our conda bin dir (this _should_ be in our PATH) | |
CONDADIR=$(which conda) | |
CONDABIN=$(dirname $CONDADIR) | |
CONDAPKG=$(dirname $CONDABIN)/pkgs | |
## download linux no-console version into the conda pkgs dir | |
cd $CONDAPKG/ |
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## save our current directory so we can return to it | |
CURDIR=$(pwd) | |
## find the path to our conda bin dir (this _should_ be in our PATH) | |
CONDADIR=$(which conda) | |
CONDABIN=$(dirname $CONDADIR) | |
CONDAPKG=$(dirname $CONDABIN)/pkgs | |
## download bpp source into the conda pkgs dir | |
cd $CONDAPKG/ |
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## save our current directory so we can return to it | |
CURDIR=$(pwd) | |
## find the path to our conda bin dir (this _should_ be in our PATH) | |
CONDADIR=$(which conda) | |
CONDABIN=$(dirname $CONDADIR) | |
CONDAPKG=$(dirname $CONDABIN)/pkgs | |
## download bpp source into the conda pkgs dir | |
cd $CONDAPKG/ |
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## save our current directory so we can come back here when we're done | |
WORKDIR=$(pwd) | |
## To install local software I keep a directory in my home dir called 'local/' | |
## the command below will make this dir if it does not already exist. | |
mkdir -p ~/local/src/ | |
## move into your local/src directory | |
cd ~/local/src |
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## save our current directory so we can come back here when we're done | |
WORKDIR=$(pwd) | |
## To install local software I keep a directory in my home dir called 'local/' | |
## the command below will make this dir if it does not already exist. | |
mkdir -p ~/local/src/ | |
## move into your local/src directory | |
cd ~/local/src |
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#!/bin/bash | |
## reload .bashrc b/c I'm not sure it's reloaded on UW's Condor | |
source /mnt/gluster/jlmcdaniel/.bashrc | |
## change into the directory with your params file | |
cd /mnt/gluster/jlmcdaniel/ipyrad/porroglossum | |
## call ipyrad to run some step, by default it will use all available cores |
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<style> | |
html { | |
font-size: 62.5% !important; } | |
body { | |
font-size: 1.5em !important; /* currently ems cause chrome bug misinterpreting rems on body element */ | |
line-height: 1.6 !important; | |
font-weight: 400 !important; | |
font-family: "Raleway", "HelveticaNeue", "Helvetica Neue", Helvetica, Arial, sans-serif !important; | |
color: #222 !important; } |
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