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dereneaton/install_structure_conda.sh

Last active February 13, 2017 23:26
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installs structure 2.3.4. into your conda dir
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install_structure_conda.sh
## save our current directory so we can return to it
CURDIR=$(pwd)
## find the path to our conda bin dir (this _should_ be in our PATH)
CONDADIR=$(which conda)
CONDABIN=$(dirname $CONDADIR)
CONDAPKG=$(dirname $CONDABIN)/pkgs
## download linux no-console version into the conda pkgs dir
cd $CONDAPKG/
curl -LkO http://pritchardlab.stanford.edu/structure_software/release_versions/v2.3.4/release/structure_linux_console.tar.gz
tar -xzvf structure_linux_console.tar.gz
rm structure_linux_console.tar.gz
## rename dir b/c 'console' is a dumb name
mv console structure-2.3.4
## copy the binary to the CONDABIN
cp structure-2.3.4/structure $CONDABIN/
## cd back to start
cd $CURDIR
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