Skip to content

Instantly share code, notes, and snippets.

📓
Preparing E-Health/drishti for FHIR DevDays

Bell Eapen dermatologist

📓
Preparing E-Health/drishti for FHIR DevDays
Block or report user

Report or block dermatologist

Hide content and notifications from this user.

Learn more about blocking users

Contact Support about this user’s behavior.

Learn more about reporting abuse

Report abuse
View GitHub Profile
@dermatologist
dermatologist / public-gist.md
Last active Nov 27, 2019
Public Gist with code snippets
View public-gist.md
@dermatologist
dermatologist / dev-openfaas-env.sh
Created Nov 24, 2019 — forked from LucasRoesler/dev-openfaas-env.sh
Create a new dev environment using KinD and immediately forward the Gateway port
View dev-openfaas-env.sh
#!/bin/bash
DEVENV=${1:-devopenfaas}
kind create cluster --name "$DEVENV"
export KUBECONFIG="$(kind get kubeconfig-path --name="$DEVENV")"
kubectl rollout status deploy coredns --watch -n kube-system
# INSTALLING HELM
@dermatologist
dermatologist / docker.sh
Created Nov 18, 2019 — forked from monkeym4ster/docker.sh
Docker: save/load container using tgz file (tar.gz)
View docker.sh
#for not running docker, use save:
docker save <dockernameortag> | gzip > mycontainer.tgz
#for running or paused docker, use export:
docker export <dockernameortag> | gzip > mycontainer.tgz
#load
gunzip -c mycontainer.tgz | docker load
@dermatologist
dermatologist / doit.sh
Created Sep 1, 2019 — forked from charlesreid1/doit.sh
Download the Large-scale CelebFaces Attributes (CelebA) Dataset from their Google Drive link
View doit.sh
#!/bin/bash
#
# Download the Large-scale CelebFaces Attributes (CelebA) Dataset
# from their Google Drive link.
#
# CelebA: http://mmlab.ie.cuhk.edu.hk/projects/CelebA.html
#
# Google Drive: https://drive.google.com/drive/folders/0B7EVK8r0v71pWEZsZE9oNnFzTm8
python3 get_drive_file.py 0B7EVK8r0v71pZjFTYXZWM3FlRnM celebA.zip
@dermatologist
dermatologist / Dockerfile
Created Aug 14, 2019 — forked from orenitamar/Dockerfile
Installing numpy, scipy, pandas and matplotlib in Alpine (Docker)
View Dockerfile
# Below are the dependencies required for installing the common combination of numpy, scipy, pandas and matplotlib
# in an Alpine based Docker image.
FROM alpine:3.4
RUN echo "http://dl-8.alpinelinux.org/alpine/edge/community" >> /etc/apk/repositories
RUN apk --no-cache --update-cache add gcc gfortran python python-dev py-pip build-base wget freetype-dev libpng-dev openblas-dev
RUN ln -s /usr/include/locale.h /usr/include/xlocale.h
RUN pip install numpy scipy pandas matplotlib
@dermatologist
dermatologist / cui2vec2word2vec.py
Last active Aug 13, 2019
Convert pre-trained cui2vec to Glove and word2vec
View cui2vec2word2vec.py
import os
from gensim.models import KeyedVectors
from gensim.scripts.glove2word2vec import glove2word2vec
if os.path.exists('cui2vec_w.txt'):
wv_from_text = KeyedVectors.load_word2vec_format('cui2vec_w.txt', unicode_errors='ignore')
print(wv_from_text.most_similar("C0000052", topn=2))
wv_from_text.save_word2vec_format('cui2vec_w.bin', binary=True)
else:
with open("cui2vec_pretrained.csv",'r') as f:
@dermatologist
dermatologist / docker-compose-backup.sh
Created Aug 3, 2019 — forked from pirate/docker-compose-backup.sh
Backup a docker-compose project, including all images, named and unnamed volumes, container filesystems, config, logs, and databases.
View docker-compose-backup.sh
#!/usr/bin/env bash
# Fully backup a docker-compose project, including all images, named and unnamed volumes, container filesystems, config, logs, and databases.
project_dir="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && cd .. && pwd )"
cd "$project_dir"
project_name=$(basename "$project_dir")
backup_time=$(date +"%Y-%m-%d_%H-%M")
backup_dir="$project_dir/data/backups/$backup_time"
View Singularity cheat sheet
// Create a Singularity image from a Docker image that is in the Docker hub
// where /tmp/ is the folder where the image will be created and ubuntu:14.04
// is the docker image used to convert to the Singularity image
docker run \
-v /var/run/docker.sock:/var/run/docker.sock \
-v /tmp/:/output \
--privileged -t --rm \
singularityware/docker2singularity \
ubuntu:14.04
//
@dermatologist
dermatologist / NLP_Demo.py
Created Feb 11, 2019 — forked from narulkargunjan/NLP_Demo.py
Topic Modeling (LDA/Word2Vec) with Spacy
View NLP_Demo.py
import os
import codecs
data_directory = os.path.join('..', 'data',
'yelp_dataset_challenge_academic_dataset')
businesses_filepath = os.path.join(data_directory,
'yelp_academic_dataset_business.json')
with codecs.open(businesses_filepath, encoding='utf_8') as f:
@dermatologist
dermatologist / install.sh
Created Feb 10, 2019 — forked from cwant/install.sh
This is a script that takes a fresh Compute Canada Ubuntu 16.04 cloud instance, installs docker, docker-compose, ruby, grabs avalon source, and starts services
View install.sh
#!/bin/bash
BIND_NETWORK='192.168'
RUBY_VERSION='2.4'
BUNDLER_VERSION='1.14'
AVALON_REPO='https://github.com/cwant/avalon'
AVALON_BRANCH='cwant/docker-refactor'
SRC_DIR=$HOME/gitwork
AVALON_DIR=$SRC_DIR/avalon
You can’t perform that action at this time.