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function  viewClassTree(directory)
% View a class inheritence hierarchy. All classes residing in the directory
% or any subdirectory are discovered. Parents of these classes are also
% discovered as long as they are in the matlab search path. 
% There are a few restrictions:
% (1) classes must be written using the new 2008a classdef syntax
% (2) classes must reside in their own @ directories.
% (3) requires the bioinformatics biograph class to display the tree.
% (4) works only on systems that support 'dir', i.e. windows. 
%  

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function matlab_alpha_bug
% Reproduce a bug on Matlab 2014b
% The peppers image will be plotted correctly; coins will not
% Both are plotted correctly in 2014a

% Daniel Golden (dan, followed by cellscope, followed by dot com)


%% Setup
close all;

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This is a method to using your Ubuntu 12.04 server without the Unity desktop on a very fast remote desktop program. This is by far the best method to managing your Ubuntu server if you like GUI.

apt-get install ubuntu-desktop
#apt-get --yes purge unity unity-2d unity-2d-places unity-2d-panel unity-2d-spread 
#apt-get --yes purge unity-asset-pool unity-services unity-lens-* unity-scope-*
#apt-get --yes purge liboverlay-scrollbar*
#apt-get --yes purge appmenu-gtk appmenu-gtk3 appmenu-qt
#apt-get --yes purge firefox-globalmenu thunderbird-globalmenu
#apt-get --yes purge unity-2d-common unity-common
#apt-get --yes purge libunity-misc4 libunity-core-5*

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## Refer to http://caffe.berkeleyvision.org/installation.html
# Contributions simplifying and improving our build system are welcome!

# No GPU
CPU_ONLY := 1

# CUDA directory contains bin/ and lib/ directories that we need.
CUDA_DIR := /usr/local/cuda

# CUDA architecture setting: going with all of them (up to CUDA 5.5 compatible).

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From d98e6fb63e689166a9919c59eed0ec37aaf782d6 Mon Sep 17 00:00:00 2001
From: Daniel Golden <dgolden1@gmail.com>
Date: Thu, 16 Oct 2014 10:46:08 -0700
Subject: [PATCH] Use accelerate instead of vecLib on OS X

Fix for https://github.com/BVLC/caffe/issues/1212
---
 Makefile | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

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function test_random_rotation
% Test random rotation logic for BVLC PR #1386
% https://github.com/BVLC/caffe/pull/1386
% 
% This code is meant to mirror as closely as possible the image rotation code in Caffe's
% data_transformer.cpp

% Author: Daniel Golden
% Date: 2014-10-31

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function verify_parse_log_equal(filename_old, filename_new)
% Verify that the old and new versions of the caffe parse_log.py output are the same

%% Setup
close all;

%% Read tables and homogenize variable names
t_old = readtable(filename_old, 'FileType', 'text', 'Delimiter', ',');
t_new = readtable(filename_new, 'FileType', 'text', 'Delimiter', ',');

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See http://stackoverflow.com/questions/27805096/wget-and-bash-error-bash-line-0-fg-no-job-control

Command:

export PS4='+($?) $BASH_SOURCE:$FUNCNAME:$LINENO:'
echo "wget --no-check-certificate --no-verbose -O a-very-long-folder-de090952623b4865c2c34bd6330f8a423ed05ed8de090952623b4865c2c34bd6330f8a423ed05ed8de090952623b4865c2c34bd6330f8a423ed05ed8/blah.jpg http://d4u3lqifjlxra.cloudfront.net/uploads/example/file/48/accordion.jpg" | xargs -J % bash -x -c %

Output:

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