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GSEA/MSigDB LICENSE AGREEMENT

MASSACHUSETTS INSTITUTE OF TECHNOLOGY SINGLE USER LICENSE AGREEMENT FOR INTERNAL RESEARCH PURPOSES ONLY

This Agreement is made between Massachusetts Institute of Technology with a principal address at 77 Massachusetts Avenue, Cambridge, MA 02139 ("MIT") and the subscriber above ("LICENSEE"), and is effective at the date the downloading is completed and proper registration/licensee subscriber information submitted ("EFFECTIVE DATE").

WHEREAS, LICENSEE desires to license the PROGRAM and/or DATABASE, as defined hereinafter, MIT wishes to have this PROGRAM and DATABASE utilized in the public interest, subject only to the royalty-free, nonexclusive, nontransferable license rights of the United States Government pursuant to 48 CFR 52.227-14, and

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STANFORD NON-COMMERCIAL SOFTWARE LICENSE AGREEMENT

1. THE BOARD OF TRUSTEES OF THE LELAND STANFORD JUNIOR UNIVERSITY ("STANFORD") provides CIBERSORT software ("Program"), including any accompanying information, materials, or manuals, free of charge for non-commercial use only. By accepting, receiving, or using the Program, you ("RECIPIENT") agree to be bound by the terms of this agreement ("Agreement"). If you do not agree to the terms of this Agreement, then do not use the Program and promptly remove all copies of the program from your computer(s).
2. RECIPIENT acknowledges that the Program is a research tool still in the development stage and that it is being supplied as is, without any accompanying services, support, or improvements from STANFORD. STANFORD makes no representations and extends no warranties of any kind, neither express nor implied.
3. RECIPIENT shall not use the Program on behalf of any organization that is not a non-profit organization. RECIPIENT shall not use the Program for commercial

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EPID 600 Workshop

This page describes the activity for the EPID 600 lecture on Open Data Science (slides).

At the start of this class, every pupil was asked to list 3 databases / datasets / data resources that they have used in their research. For each of these three resources (time permitting), please report via the comments below the following information:

1. Is the data subject to copyright? If no, end.
2. Does the resource have a license?
3. If no, contact the creators and inquire whether there license that allows reuse?
4. If yes, does the license allow:

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"""
This file contains python functions for automatically retreiving DOI metadata
and creating bibtex references. `get_bibtex_entry(doi)` creates a bibtex entry
for a DOI. It fixes a Data Cite author name parsing issue. Short DOIs are used
for bibtex citation keys.

Created by Daniel Himmelstein and released under CC0 1.0.
"""

import urllib.request

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DATE ADDED TO CATALOG	PUBMEDID	FIRST AUTHOR	DATE	JOURNAL	LINK	STUDY	DISEASE/TRAIT	INITIAL SAMPLE SIZE	REPLICATION SAMPLE SIZE	REGION	CHR_ID	CHR_POS	REPORTED GENE(S)	MAPPED_GENE	UPSTREAM_GENE_ID	DOWNSTREAM_GENE_ID	SNP_GENE_IDS	UPSTREAM_GENE_DISTANCE	DOWNSTREAM_GENE_DISTANCE	STRONGEST SNP-RISK ALLELE	SNPS	MERGED	SNP_ID_CURRENT	CONTEXT	INTERGENIC	RISK ALLELE FREQUENCY	P-VALUE	PVALUE_MLOG	P-VALUE (TEXT)	OR or BETA	95% CI (TEXT)	PLATFORM [SNPS PASSING QC]	CNV
2013-12-01	23722424	Rietveld CA	2013-05-30	Science	www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 126,559 European ancestry individuals	NA	2q37.2	2	236149500	GBX2	AGAP1 - LOC105373944	116987	105373944		17700	11866	rs11687170-T	rs11687170		11687170	downstream_gene_variant	0	0.770	3.0000000000000004E-8	7.522878745280337	(Edu Years)	0.107	[NR]unit increase	Illumina, Affymetrix, Perlegen [up to 2,321,8963] (imputed)	N
2013-12-01	23722424	Rietveld CA