plink --file <name-without-map-or-ped-ending> --linear \
--pheno <name(.pheno)> --pheno-name <column> --covar \
--covar-name <names-of-covariants,separated,by,commas> \
--out <output-file-name-root> \
--noweb \ # don't check for update of PLINK
[--qq-plot] \ # gives expected distribution of p-values
[--adjust] \ # has some different ways of calculating p-val
Daniel Jay Haskin djhaskin987
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| This is a Gist File. | |
| 25 years of my life and STILL |
djhaskin987
/ Masterless RPM or DEB Puppet Module Files List
Last active
December 21, 2015 11:58
— forked from jordansissel/site.pp
A suggested layout for an RPM or a DEB package which installs a masterless puppet module named 'foo'.
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| /usr/share/puppet/modules/foo | |
| /usr/share/puppet/modules/foo/manifests | |
| /usr/share/puppet/modules/foo/manifests/init.pp | |
| /usr/share/puppet/modules/foo/files | |
| /usr/share/puppet/modules/foo/files/hello | |
| /usr/share/puppet/masterless/foo.pp |
djhaskin987
/ document.tex
Created
September 11, 2013 20:55
A sample latex document that can be used as a template for general latex usage.
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| \documentclass[12pt]{article} | |
| \usepackage{amsmath,amsfonts,amssymb,amsthm} | |
| \usepackage[pdftex]{graphicx} | |
| \setlength{\pdfpagewidth}{8.5in} | |
| \setlength{\pdfpageheight}{11in} | |
| \setlength{\topmargin}{0.0in} | |
| \setlength{\voffset}{0.0in} | |
| \setlength{\headheight}{0.0in} |
djhaskin987
/ gist:6642667
Created
September 20, 2013 19:33
— forked from lukewpatterson/gist:4242707
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| Tricks to add encrypted private SSH key to .travis.yml file | |
| To encrypt the private SSH key into the "-secure: xxxxx....." lines to place in the .travis.yml file, generate a deploy key then run: (to see what the encrypted data looks like, see an example here: https://github.com/veewee-community/veewee-push/blob/486102e6f508214b04414074c921475e5943f682/.travis.yml#L21 | |
| base64 --wrap=0 ~/.ssh/id_rsa > ~/.ssh/id_rsa_base64 | |
| ENCRYPTION_FILTER="echo \$(echo \"-\")\$(travis encrypt veewee-community/veewee-push \"\$FILE='\`cat $FILE\`'\" | grep secure:)" | |
| split --bytes=100 --numeric-suffixes --suffix-length=2 --filter="$ENCRYPTION_FILTER" ~/.ssh/id_rsa_base64 id_rsa_ | |
djhaskin987
/ plink.md
Last active
December 25, 2015 15:29
djhaskin987
/ PFDS_Chapter2.ml
Created
December 18, 2013 01:53
Chris Okasaki's "Purely Functional Data Structures", Chapter 2 Excercises
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| (* Excercise 2.1 | |
| * We proceed by induction. | |
| * If 'lst' is an empty list, we simply return lst itself. | |
| * If 'lst' is a non-empty list, we store the pointer to the tail of the list, | |
| * plus any pointers stored by a recursive call to suffixes. | |
| * [] | |
| *) | |
| let rec suffixes lst = | |
| match lst with | |
| [] -> lst |
djhaskin987
/ fpm_jar.sh
Last active
August 29, 2015 14:02
— forked from anonymous/gist:5c7c5134ec049b277615
Create an #FPM jar using #JRuby and #Warbler
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| #!/bin/sh | |
| # Main idea largely taken from http://stackoverflow.com/a/8410010/850326 | |
| prefix="${HOME}/Software" # Another viable option: /opt/ | |
| wget http://jruby.org.s3.amazonaws.com/downloads/1.7.12/jruby-bin-1.7.12.zip | |
| unzip jruby-bin-1.7.12.zip | |
| mkdir -p "${prefix}" | |
| mv jruby-1.7.12 "${prefix}" | |
| export PATH="${PATH}:${prefix}/jruby-1.17.12" |
Possible first-hack at the debian scripts for install-upgrade-configure: preinst
if [ "${1}" = "install" -a -z "${1}" ]
then
# "before install" goes here
elif [ "${1}" = "upgrade" -a -n "${2}" ]
then
upgradeVersion="${2}"
# "before upgrade" goes here
djhaskin987
/ clojure-deftype-scaffolding.clj
Last active
August 29, 2015 14:12
— forked from semperos/clojure-deftype-scaffolding.clj
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| ;; Big thanks to Christophe Grand - https://groups.google.com/d/msg/clojure/L1GiqSyQVVg/m-WJogaqU8sJ | |
| (defn scaffold [iface] | |
| (doseq [[iface methods] (->> iface .getMethods | |
| (map #(vector (.getName (.getDeclaringClass %)) | |
| (symbol (.getName %)) | |
| (count (.getParameterTypes %)))) | |
| (group-by first))] | |
| (println (str " " iface)) | |
| (doseq [[_ name argcount] methods] | |
| (println |
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