dmyersturnbull

import pandas as pd
import itertools
import time
import multiprocessing
from typing import Callable, Tuple, Union

def groupby_parallel(
  groupby_df: pd.core.groupby.DataFrameGroupBy,
  func: Callable[[Tuple[str, pd.DataFrame]], Union[pd.DataFrame, pd.Series]],
  num_cpus: int = multiprocessing.cpu_count() - 1,

dmyersturnbull

/**
 * Recommended exit codes from {@code /usr/include/sysexits.h}.
 */
public final class ExitStatus {
    public static final int OK = 0;
    public static final int GENERIC_ERROR = 1;
    public static final int BASE = 64;
    public static final int USAGE = 64;
    public static final int NO_DATA = 65;
    public static final int NO_INPUT = 66;

dmyersturnbull

*.backup
/data

dmyersturnbull

[metadata]
description-file = "README.md"

[build-system]
requires = ["poetry>=1.0", "coverage[toml]"]
build-backend = "poetry.masonry.api"


#########################################################################################
# Poetry metadata

dmyersturnbull

class FancyCmaps:
    """
    Useful colormaps for matplotlib. Most importantly:
        - white_red
        - white_blue
        - blue_white
        - white_black
    The built-in matplotlib ones don't actually go between pure color values!!
    For ex, 'Greys' doesn't go from pure white to pure black!
    So colormaps to consider avoiding include Greys, Blues, Greens, (etc), bwr, and seismic.

dmyersturnbull

import argparse, sys, re, logging
from pathlib import Path
from typing import Mapping, Any, Sequence, Collection
from typing import Tuple as Tup

logger = logging.getLogger('paperpile-latex')


class Paperpiler:

dmyersturnbull

[
    {
        "code": "100",
        "phrase": "Continue",
        "description": "The initial part of a request has been received and has not yet been rejected by the server.",
        "spec_title": "RFC7231#6.2.1",
        "spec_href": "https://tools.ietf.org/html/rfc7231#section-6.2.1"
    },
    {
        "code": "101",

dmyersturnbull

import sys
import re
from pathlib import Path

def fix(path: Path, accent_file: Path, output_path: Path) -> None:
    """
    Reformat my bib file.
    
    * Remove PMC and DOI URLs because they're listed as IDs anyway.
    * Replace accent-like escape characters with their UTF equivalents. I mean, it's 2020.

dmyersturnbull

See https://github.com/dmyersturnbull/genomics-io/tree/master/core/src/main/java/org/pharmgkb/parsers/escape

package org.pharmgkb.parsers.escape;

import com.google.common.base.Preconditions;
import com.google.common.collect.ImmutableSet;

import javax.annotation.Nonnull;
import javax.annotation.concurrent.NotThreadSafe;
import javax.annotation.concurrent.ThreadSafe;

dmyersturnbull

// copied from https://github.com/dmyersturnbull/genomics-io/blob/master/core/src/main/java/org/pharmgkb/parsers/utils/HttpHeadResponse.java
package org.pharmgkb.parsers.utils;

import com.google.common.collect.ImmutableMap;

import javax.annotation.Nonnegative;
import javax.annotation.Nonnull;
import javax.annotation.concurrent.Immutable;
import java.io.IOException;
import java.net.HttpURLConnection;