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drigodwin/gist:1778783b446795b1fcf99ba036e6956d

Created October 11, 2017 20:54
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gistfile1.txt
//========================== featureCounts setting ===========================\\
|| ||
|| Input files : 1 BAM file ||
|| P esc.bam ||
|| ||
|| Dir for temp files : . ||
|| Threads : 1 ||
|| Level : meta-feature level ||
|| Paired-end : no ||
|| Strand specific : no ||
|| Multimapping reads : not counted ||
|| Multi-overlapping reads : not counted ||
|| Min overlapping bases : 1 ||
|| ||
\\===================== http://subread.sourceforge.net/ ======================//
//================================= Running ==================================\\
|| ||
|| Load annotation file ../../../genomes/Mus_musculus/Ensembl/NCBIM37/Ann ... ||
|| Features : 427945 ||
|| Meta-features : 50068 ||
|| Chromosomes/contigs : 136 ||
|| ||
|| Process BAM file esc.bam... ||
|| Paired-end reads are included. ||
|| Assign reads to features... ||
|| Total reads : 98780617 ||
|| Successfully assigned reads : 24339057 (24.6%) ||
|| Running time : 2.07 minutes ||
|| ||
|| Read assignment finished. ||
|| ||
\\===================== http://subread.sourceforge.net/ ======================//
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