dyndna

Issue:

Upon sudo service docker start, docker daemon fails to start with tail /var/log/docker showing following error:

time="2015-04-07T00:28:43Z" level="info" msg="+job serveapi(unix:///var/run/docker.sock)" 
time="2015-04-07T00:28:43Z" level="info" msg="WARNING: You are running linux kernel version 2.6.32-504.12.2.el6.x86_64, which might be unstable running docker. Please upgrade your kernel to 3.8.0." 
time="2015-04-07T00:28:43Z" level="info" msg="Listening for HTTP on unix (/var/run/docker.sock)" 
time="2015-04-07T00:28:45Z" level="fatal" msg="Error loading device metadata file .tmp529617825" 

dyndna

sudo cp /etc/bluetooth/main.conf /etc/bluetooth/main.conf.OLD
sudo nano /etc/bluetooth/main.conf

#Search for the entry:
InitiallyPowered = true

#and change the value to:
InitiallyPowered = false

dyndna

bed to gtf conversion for syn3606092 file, rnaseq.gc19_extNc.bed was done as follows:

Ref.: http://onetipperday.blogspot.com/2012/08/convert-bed-to-gtf.html

#wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToGenePred
#wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToGtf
<workdir>/scripts/bedToGenePred rnaseq.gc19_extNc.bed rnaseq.gc19_extNc.btgp.genepred
<workdir>/scripts/genePredToGtf file rnaseq.gc19_extNc.btgp.genepred rnaseq.gc19_extNc.gptg.gtf

dyndna

#!/bin/bash

# Find disk usage per base directory, per user
# http://unix.stackexchange.com/a/77509/28675
# http://stackoverflow.com/a/32533111/1243763

BASEDIR="$1"
MYTIME="$(date +%d%b%y_%H%M%S%Z)"

if [ -z "$BASEDIR" ] || [ ! -d "$BASEDIR" ]; then

dyndna

Keybase proof

I hereby claim:

• I am dyndna on github.
• I am sbamin (https://keybase.io/sbamin) on keybase.
• I have a public key whose fingerprint is FC90 E95D 5E01 4D54 26FF 1163 13B4 0CB3 1EAE A07B

To claim this, I am signing this object:

dyndna

### An example of building a TensorFlow model from R using rPython ###
# For this script you need to 
# 1. Have python 2.7 installed.
# 2. Install the rPython package in R.
# 3. Install Google's TensorFlow library as per these instructions:
#     http://www.tensorflow.org/get_started/os_setup.md#binary_installation

### Here is how to setup and run a trivial TensorFlow model ###

# Load TensorFlow (I couldn't get this to work without setting sys.argv... )

dyndna

#### Parallel MPI BZIP2
## See man doc at http://compression.ca/mpibzip2/
### for .tar or tar.bz2 files,
## mpirun -np 4 mpibzip2 myfile.tar or  mpirun -np 4 mpibzip2 myfile.tar.bz2
### for tar.gz files, see pigz at http://serverfault.com/a/270825/149084
## pigz -dk -p 4 target.tar.gz | tar -xf
# remove -k to delete original file after decompression.

# Make file for MPI BZIP2
SHELL=/bin/sh

dyndna

'''
    This script will attempt to open your webbrowser,
    perform OAuth 2 authentication and print your access token.

    It depends on two libraries: oauth2client and gflags.

    To install dependencies from PyPI:

    $ pip install python-gflags oauth2client
    

dyndna

#### Get gene annotations ####
# By Michael Love, http://www.bioconductor.org/help/workflows/rnaseqGene/

library("AnnotationDbi")
library("org.Hs.eg.db")
columns(org.Hs.eg.db)

convertIDs <- function( ids, from, to, db, ifMultiple=c("putNA", "useFirst")) {
  stopifnot( inherits( db, "AnnotationDb" ) )
  ifMultiple <- match.arg( ifMultiple )

dyndna

Download Circos:

http://circos.ca/software/download/

wget http://circos.ca/distribution/circos-0.67-7.tgz
tar xvzf circos-0.67-7.tgz
cd circos-0.67-7/bin
ls