createQS.groovy

@Grab(group='io.github.egonw.bacting', module='managers-ui', version='1.0.0')
@Grab(group='io.github.egonw.bacting', module='net.bioclipse.managers.wikidata', version='1.0.0')

import java.util.*;
import java.text.SimpleDateFormat;

workspaceRoot = "."
ui = new net.bioclipse.managers.UIManager(workspaceRoot);
wikidata = new net.bioclipse.managers.WikidataManager(workspaceRoot);

citoIntents = new HashMap<String,String>()
citoIntents.put("cites","Q96471816")
citoIntents.put("citesasevidence","Q111736347")
citoIntents.put("citesasrecommendedreading","Q111736358")
citoIntents.put("citesforinformation","Q96479970")
citoIntents.put("credits","Q117121919")
citoIntents.put("critiques","Q105624924")
citoIntents.put("describes","Q117358004")
citoIntents.put("discusses","Q96471822")
citoIntents.put("disputes","Q117121923")
citoIntents.put("extends","Q96472100")
citoIntents.put("includesexcerptfrom","Q117121925")
citoIntents.put("obtainsbackgroundfrom","Q96480394")
citoIntents.put("obtainssupportfrom","Q115470993")
citoIntents.put("qualifies","Q117121930")
citoIntents.put("refutes","Q107710355")
citoIntents.put("ridicules","Q117121932")
citoIntents.put("updates","Q96473628")
citoIntents.put("usesconclusionsfrom","Q117121934")
citoIntents.put("usesdatafrom","Q101149476")
citoIntents.put("usesmethodin","Q96472102")

Map<String,List<String>> data = new HashMap();

new File("cits_clean.csv").eachLine { line ->
  fields = line.trim().split(",")
  data.put(fields[0], fields[1])
}

entityIDs = wikidata.getEntityIDsForDOIs(data.keySet().asList())

def outputCitation(String doi, String wikidata, String intention) {
  intention = intention.trim().toLowerCase()
  if (intention.isEmpty()) { // do nothing
  } else if (citoIntents.containsKey(intention)) {
    today = new SimpleDateFormat("yyyy-MM-dd").format(new Date());
    println "${wikidata},Q28264479,${citoIntents.get(intention)},Q128383261,+${today}T00:00:00Z/11"
  } else {
    println "# unrecognized intention: ${intention} Wakefield"
  }
}

println "qid,P2860,qal3712,S248,s813"
entityIDs.each { doi, wikidataIRI ->
  wikidata = wikidataIRI.substring(31)
  intentions = data.get(doi).replaceAll(" ", "")
  println "# data: ${doi} = ${wikidata} ${intentions}"
  if (intentions.contains(";")) {
    intentions.split(";").each { intention ->
      outputCitation(doi, wikidata, intention)
    }
  } else {
    outputCitation(doi, wikidata, intention)
  }
}