ehazlett

#!/usr/bin/env python

import os
import sys
import logging
from datetime import date
from optparse import OptionParser

IMAGE_TYPES = [
    'png',

ehazlett

#!/usr/bin/env python
# numpy and biopython are required -- pip install numpy biopython

from Bio import Entrez
from Bio import Medline

MAX_COUNT = 10
TERM = 'Tuberculosis'

print('Getting {0} publications containing {1}...'.format(MAX_COUNT, TERM))

ehazlett

#!/usr/bin/env
#
# Requirements:
#  argparse==1.2.1
#  pymongo==2.1
#  redis==2.4.10

import redis
import pymongo
import argparse

ehazlett

def find_in_sorted(arr, x): 
    ''' 
        Returns index of x in arr
        Precondition: arr is sorted
    '''
    def binsearch(start, end):
        mid = start + (end - start) // 2
        if start == end:
            return -1
        if x < arr[mid]:

ehazlett

#!/usr/bin/env python

from optparse import OptionParser
import boto.ec2
import logging
import sys
   
def get_ec2_connection(aws_key=None, aws_secret=None, region='us-east-1'):
    """
    Returns an EC2Connection to the specified region

ehazlett

class tomcat {
  $tomcat_url = "http://mirrors.axint.net/apache/tomcat/tomcat-7/v7.0.25/bin/apache-tomcat-7.0.25.tar.gz"
  $jdk_url = "http://download.oracle.com/otn-pub/java/jdk/6u25-b06/jdk-6u25-linux-x64.bin"

  Exec {
    path  => "${::path}",
  }
  group { "puppet":
    ensure  => present,
  }

ehazlett

[program:redis]
command=/usr/local/bin/redis-server /storage/redis_data/redis.conf
directory=/storage/redis_data
user=root
autostart=false
stopsignal=QUIT

ehazlett

[program:mongodb]
command=/opt/mongodb/bin/mongod --dbpath /storage/mongodb_data --rest
directory=/opt/mongodb
user=root
autostart=false

ehazlett

Benchmarks for COI API using ApacheBench

Tests performed using apache bench from Intech network using a wired connection.

API Host: t1.micro - ec2-184-72-205-178.compute-1.amazonaws.com
MongoDB Host: m1.large - ec2-23-20-88-122.compute-1.amazonaws.com
Redis Host: t1.micro - ec2-184-72-205-178.compute-1.amazonaws.com (same as API host)

-----
1000 req with 100 concurrent to Redis

ehazlett

-javaagent:/opt/tomcat7/webapps/ROOT/WEB-INF/lib/newrelic.jar