Dockerfile to build PDAL with the MB-System driver

Dockerfile

FROM ubuntu:20.04

ENV DEBIAN_FRONTEND=noninteractive
ENV PYTHONUNBUFFERED=1

ARG MBSYS_VERSION=5.7.5
RUN apt-get update && apt-get upgrade -y 

# main build dependencies

RUN apt-get install -y \
	    python3-pip \
        build-essential \
        gfortran \
        libeigen3-dev \
        cmake \
        git \
        wget \
        unzip \
        pkg-config \
        pkg-config \
        python3-dev \
        python3-numpy \
        pylint \
        libgdal-dev \
        cmake-curses-gui \
        nano 
        
# MB-System dependencies

RUN apt-get update && apt-get install -y gmt \
                       libgmt-dev \
                       libfftw3-dev \
                       libgl1-mesa-dev \
                       libglu1-mesa-dev \
                       cmake-curses-gui \
                       liblaszip-dev \
                       python3-all-dev \
                       libtirpc-dev \
                       libntirpc-dev \
                       libmotif-dev \
    && rm -rf /var/lib/apt/lists/*
                       
COPY OTPS.tar.Z OTPS.tar.Z
RUN tar -zxvf OTPS.tar.Z && rm -rf OTPS.tar.Z && cd OTPS && make && make predict_tide

RUN ls /usr/include/tirpc/
RUN ls /usr/include/tirpc/rpc

# Install the last working version  5.7.5 of MB-System which is known to work with the PDAL MBIO driver
RUN mkdir -p /opt/mb && cd /opt/mb && wget https://github.com/dwcaress/MB-System/archive/$MBSYS_VERSION.tar.gz && \
    tar -zxf $MBSYS_VERSION.tar.gz && \
    cd MB-System-$MBSYS_VERSION && \
    sh autogen.sh && \
    ./configure --disable-mbtools --with-proj-include=/usr/include \
                --with-otps-dir='OTPS/' && \
    make -j"$(nproc)" && \
    make install

# comment the previous MB-System build instruction and uncomment the one below 
# to enable the build of MB-System from github master branch


# RUN mkdir -p /opt/mb && cd /opt/mb && git clone https://github.com/dwcaress/MB-System/ && \
#     cd MB-System && \
#     ./configure --disable-mbtools --with-proj-include=/usr/include \
#                 --with-otps-dir='OTPS/' && \
#     make -j"$(nproc)" && \
#     make install

RUN mkdir -p /opt/pdal && cd /opt/pdal && git clone https://github.com/hobu/laz-perf.git && \
    cd laz-perf && \
    mkdir build && \
    cd build && \
    cmake .. && \
    make -j"$(nproc)" && \
    make install

RUN mkdir -p /opt/pdal && cd /opt/pdal && git clone https://github.com/PDAL/PDAL && \
    cd PDAL && \
    mkdir build && \
    cd build && \
    cmake -DBUILD_PLUGIN_MBIO=ON -DCMAKE_BUILD_TYPE=Debug .. && \
    make -j"$(nproc)" && \
    make install

RUN /usr/bin/python3 -m pip install --upgrade pip && pip install scikit-build && pip install pybind11[global]
RUN pip3 install Cython

RUN cd /opt/pdal && \
    git clone https://github.com/PDAL/python && \
    cd python && \ 
    python3 setup.py build && \ 
    python3 setup.py install

RUN ldconfig /etc/ld.so.conf.d

# Download (or copy) a sonar test file into the docker image 
RUN wget --directory-prefix=/opt/mb-data/ https://cloud.epinux.com/s/5MWBzBEssoK7AEM/download/170_001_1942.hsx
# COPY 170_001_1942.hsx /opt/mb-data/170_001_1942.hsx

# uncooment the line below to run a simple test 
# RUN pdal info --driver readers.mbio --readers.mbio.format="MBF_HYSWEEP1" /opt/mb-data/170_001_1942.hsx