CONFIGURE.OUT

checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether the Fortran 90 compiler (gfortran -g -O2 ) works... yes
checking if the fortran compiler supports iso c binding... 
checking for python... /Users/eschnett/anaconda3/bin/python
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /opt/local/bin/ggrep
checking for egrep... /opt/local/bin/ggrep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking Python.h usability... yes
checking Python.h presence... yes
checking for Python.h... yes
checking if possible to embed python... no
checking for java... /usr/bin/java
checking for javac... /usr/bin/javac
checking for jar... /usr/bin/jar
checking whether Java compiler works... yes
checking whether Java interpreter works... yes
checking Java environment... /Library/Java/JavaVirtualMachines/jdk1.8.0_60.jdk/Contents/Home/jre
checking Java version... 1.8
checking for mpiexec... /Users/eschnett/anaconda3/bin/mpiexec
checking for mpicxx... mpicxx
checking checking MPI C++ flags... flags found
checking for MPI_Init... yes
checking for mpi.h... yes
checking for mpicc... mpicc
checking checking MPI C flags... flags found
checking for mpi.h... yes
checking for mpif90... mpif90
checking checking MPI Fortran flags... could not determine c flags from show functions
checking for mpif.h... no
checking for OpenMP flag of C compiler... -fopenmp
checking for OpenMP flag of Fortran compiler... -fopenmp
checking if gfortran accepts -dumpversion option... yes
checking gfortran version... 8.2.0
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checking whether we are using the Microsoft C compiler... no
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checking windows.h usability... no
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checking for pkg-config... /opt/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
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checking fftw3.h presence... yes
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checking for fftw_plan_dft_r2c in -lfftw3... yes
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checking for __gmpz_init in -lgmp... yes
checking mpfr.h usability... yes
checking mpfr.h presence... yes
checking for mpfr.h... yes
checking for mpfr_init in -lmpfr... yes
checking how to run the C++ preprocessor... g++ -E
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checking mpreal.h presence... no
checking for mpreal.h... no
configure: WARNING: Cannot find header (mpreal.h) of the library MPFR with MPFR_FLAGS -I/opt/local/include.
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checking Fortran netcdf presence... configure: WARNING: Cannot compile or link against library Fortran NETCDF in /opt/local
checking for nc_inq_libvers in -lnetcdf... no
configure: WARNING: libnetcdf : library missing. (Cannot find symbol nc_inq_libvers) in /opt/local. Check if libnetcdf3 is installed and if the version is correct
checking for gcc option to produce PIC... -fPIC
checking for GSL... yes
checking for python module numpy... found (1.15.1)
checking for python module mpi4py... found (2.0.0)
checking for python module h5py... found (2.8.0)
checking for python module nose... found (1.3.7)
checking for python module docutils... found (0.14)
checking for python module zlib... found (1.0)
checking for python module matplotlib... found
configure: creating ./config.status
config.status: creating src/amuse/config.py
config.status: creating support/config.py
config.status: creating support3/config.py
config.status: creating config.mk
config.status: creating build.py

gistfile1.txt

checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether the Fortran 90 compiler (gfortran -g -O2 ) works... yes
checking if the fortran compiler supports iso c binding... 
checking for python... /Users/eschnett/anaconda3/bin/python
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /opt/local/bin/ggrep
checking for egrep... /opt/local/bin/ggrep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking Python.h usability... yes
checking Python.h presence... yes
checking for Python.h... yes
checking if possible to embed python... no
checking for java... /usr/bin/java
checking for javac... /usr/bin/javac
checking for jar... /usr/bin/jar
checking whether Java compiler works... yes
checking whether Java interpreter works... yes
checking Java environment... /Library/Java/JavaVirtualMachines/jdk1.8.0_60.jdk/Contents/Home/jre
checking Java version... 1.8
checking for mpiexec... /Users/eschnett/anaconda3/bin/mpiexec
checking for mpicxx... mpicxx
checking checking MPI C++ flags... flags found
checking for MPI_Init... yes
checking for mpi.h... yes
checking for mpicc... mpicc
checking checking MPI C flags... flags found
checking for mpi.h... yes
checking for mpif90... mpif90
checking checking MPI Fortran flags... could not determine c flags from show functions
checking for mpif.h... no
checking for OpenMP flag of C compiler... -fopenmp
checking for OpenMP flag of Fortran compiler... -fopenmp
checking if gfortran accepts -dumpversion option... yes
checking gfortran version... 8.2.0
checking for a sed that does not truncate output... /opt/local/bin/gsed
checking whether we are using the Microsoft C compiler... no
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checking CL/cl.h presence... no
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checking OpenCL/cl.h presence... yes
checking for OpenCL/cl.h... yes
checking windows.h usability... no
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checking for windows.h... no
checking for OpenCL library... no
checking for pkg-config... /opt/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking fftw3.h usability... yes
checking fftw3.h presence... yes
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checking for fftw_plan_dft_r2c in -lfftw3... yes
checking gmp.h usability... yes
checking gmp.h presence... yes
checking for gmp.h... yes
checking for __gmpz_init in -lgmp... yes
checking mpfr.h usability... yes
checking mpfr.h presence... yes
checking for mpfr.h... yes
checking for mpfr_init in -lmpfr... yes
checking how to run the C++ preprocessor... g++ -E
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checking mpreal.h presence... no
checking for mpreal.h... no
configure: WARNING: Cannot find header (mpreal.h) of the library MPFR with MPFR_FLAGS -I/opt/local/include.
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking for H5_init_library in -lhdf5... yes
checking netcdf.h usability... yes
checking netcdf.h presence... yes
checking for netcdf.h... yes
checking Fortran netcdf presence... configure: WARNING: Cannot compile or link against library Fortran NETCDF in /opt/local
checking for nc_inq_libvers in -lnetcdf... no
configure: WARNING: libnetcdf : library missing. (Cannot find symbol nc_inq_libvers) in /opt/local. Check if libnetcdf3 is installed and if the version is correct
checking for gcc option to produce PIC... -fPIC
checking for GSL... yes
checking for python module numpy... found (1.15.1)
checking for python module mpi4py... found (2.0.0)
checking for python module h5py... found (2.8.0)
checking for python module nose... found (1.3.7)
checking for python module docutils... found (0.14)
checking for python module zlib... found (1.0)
checking for python module matplotlib... found
configure: creating ./config.status
config.status: creating src/amuse/config.py
config.status: creating support/config.py
config.status: creating support3/config.py
config.status: creating config.mk
config.status: creating build.py

gistfile2.txt

/Users/eschnett/anaconda3/bin/python setup.py build
running build
running build_py
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running configure_codes
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building libraries and community codes
build, for logging, see 'build.log'
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/hacs64/test_multiples.py: ParseError: bad input: type=22, value='=', context=('', (89, 60))
Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/hacs64/test_hacs.py: ParseError: bad input: type=22, value='=', context=('', (52, 45))
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/mesa/patch_files.py: ParseError: bad input: type=22, value='=', context=('', (66, 52))
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/mocassin/patch_files.py: ParseError: bad input: type=22, value='=', context=('', (66, 52))
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/mpiamrvac/patch_files.py: ParseError: bad input: type=22, value='=', context=('', (66, 52))
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/ph4/test_sync.py: ParseError: bad input: type=22, value='=', context=('', (67, 34))
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/rebound/patch_files.py: ParseError: bad input: type=22, value='=', context=('', (66, 52))
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/smalln/test_smallN.py: ParseError: bad input: type=22, value='=', context=('', (209, 59))
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[15:20:47] building amuse_mpi-library
[15:20:47] building forsockets-library
[15:20:47] building g6-library
[15:20:47] building sapporo_2-library
[15:20:47] building sapporo_light-library
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[15:20:54] building fractalcluster
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[15:20:55] building galactics
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[15:21:22] skipping mesa
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[15:21:24] building smalln
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[15:21:25] building twobody
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mpiamrvac
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nbody6xx
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octgrav
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phigrape
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pikachu
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ramses
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rebound
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sakura
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seba
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secularmultiple
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sei
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simplex
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smalln
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sphray
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sse
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tupan
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twobody
Community codes not built (because of errors):
================================================================================
 * aarsethzare
 * athena
 * bse
 * capreole
 * evtwin
 * fi
 * flash
 * fractalcluster
 * galactics
 * galaxia
 * hacs64
 * kepler_orbiters
 * mercury
 * mikkola
 * mmc
 * nbody6xx
 * phigrape
 * ramses
 * sphray
 * sse
Optional builds failed, need special libraries:
 * bhtree - cython
 * distributed - java
 * fastkick - gpu
 * gadget2 - cython_periodic, cython_normal, cython_periodic_nogravity, cython_nogravity
 * hermite0 - cython
 * higpus - gpu
 * huayno - cython_cl, cl, cl, cl, cl, cl, cl.so, cl.so, cl.so, cl.so, cl.so, cython, mp, mp, mp, cython_mp, mp.so, mp.so, mp.so
 * kepler - cython
 * mi6 - gpu
 * ph4 - gpu
 * seba - cython
 * smalln - cython
Optional builds failed, need CUDA/GPU libraries:
 * sapporo_light
 * bonsai
 * etics
 * octgrav
 * pikachu
Optional builds failed, need separate download
 * krome , make krome.code DOWNLOAD_CODES=1
 * mocassin , make mocassin.code DOWNLOAD_CODES=1
 * mpiamrvac , make mpiamrvac.code DOWNLOAD_CODES=1
 * rebound , make rebound.code DOWNLOAD_CODES=1
 * tupan , make tupan.code DOWNLOAD_CODES=1
================================================================================
Community codes built
================================================================================
* adaptb
* asterisk (java)
* bhtree
* brutus
* distributed
* fastkick
* gadget2 (periodic,normal,periodic_nogravity,nogravity)
* halogen
* hermite0
* higpus
* hop
* huayno
* kepler
* mameclot
* mi6
* mmams
* ph4
* sakura
* seba
* secularmultiple
* sei
* simplex
* smalln
* twobody
================================================================================
24 out of 44 codes built, 4 out of 6 libraries built

MAKE.OUT

/Users/eschnett/anaconda3/bin/python setup.py build
running build
running build_py
copying src/amuse/config.py -> build/lib/amuse
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running configure_codes
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running build_codes
building libraries and community codes
build, for logging, see 'build.log'
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/hacs64/test_multiples.py: ParseError: bad input: type=22, value='=', context=('', (89, 60))
Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/hacs64/test_hacs.py: ParseError: bad input: type=22, value='=', context=('', (52, 45))
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/mesa/patch_files.py: ParseError: bad input: type=22, value='=', context=('', (66, 52))
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/mocassin/patch_files.py: ParseError: bad input: type=22, value='=', context=('', (66, 52))
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/mpiamrvac/patch_files.py: ParseError: bad input: type=22, value='=', context=('', (66, 52))
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/ph4/test_sync.py: ParseError: bad input: type=22, value='=', context=('', (67, 34))
Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/ph4/plotq.py: ParseError: bad input: type=22, value='=', context=('', (158, 29))
Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/ph4/test_multiples2.py: ParseError: bad input: type=22, value='=', context=('', (74, 30))
Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/ph4/test_ph4.py: ParseError: bad input: type=22, value='=', context=('', (59, 30))
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/rebound/patch_files.py: ParseError: bad input: type=22, value='=', context=('', (66, 52))
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Can't parse /Users/eschnett/src/amuse-11.2/build/temp.macosx-10.7-x86_64-3.6/codes/smalln/test_smallN.py: ParseError: bad input: type=22, value='=', context=('', (209, 59))
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[15:20:47] building amuse_mpi-library
[15:20:47] building forsockets-library
[15:20:47] building g6-library
[15:20:47] building sapporo_2-library
[15:20:47] building sapporo_light-library
[15:20:48] building simple_hash-library
[15:20:48] building stopcond-library
[15:20:48] building aarsethzare
[15:20:48] building adaptb
[15:20:48] building asterisk
[15:20:50] building athena
[15:20:51] building bhtree
[15:20:51] building bonsai
[15:20:52] building brutus
[15:20:52] building bse
[15:20:52] building capreole
[15:20:52] building distributed
[15:20:52] building etics
[15:20:52] building evtwin
[15:20:53] building fastkick
[15:20:53] building fi
[15:20:53] building flash
[15:20:54] building fractalcluster
[15:20:54] building gadget2
[15:20:55] building galactics
[15:20:55] building galaxia
[15:20:55] building hacs64
[15:20:57] building halogen
[15:20:57] building hermite0
[15:20:57] building higpus
[15:20:57] building hop
[15:20:57] building huayno
[15:21:20] building kepler
[15:21:20] building kepler_orbiters
[15:21:21] building krome
[15:21:22] building mameclot
[15:21:22] building mercury
[15:21:22] skipping mesa
[15:21:22] building mi6
[15:21:22] building mikkola
[15:21:22] building mmams
[15:21:22] building mmc
[15:21:22] building mocassin
[15:21:22] building mpiamrvac
[15:21:23] building nbody6xx
[15:21:23] building octgrav
[15:21:23] building ph4
[15:21:23] building phigrape
[15:21:23] building pikachu
[15:21:23] building ramses
[15:21:24] building rebound
[15:21:24] building sakura
[15:21:24] building seba
[15:21:24] building secularmultiple
[15:21:24] building sei
[15:21:24] building simplex
[15:21:24] building smalln
[15:21:24] building sphray
[15:21:25] building sse
[15:21:25] building tupan
[15:21:25] building twobody
will copy worker: src/amuse/community/aarsethzare
aarsethzare
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adaptb
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asterisk
copying build/temp.macosx-10.7-x86_64-3.6/codes/asterisk/asterisk_worker_java -> build/lib/amuse/_workers
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athena
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bhtree
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bonsai
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bse
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capreole
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distributed
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etics
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evtwin
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fi
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kepler
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nbody6xx
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ph4
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phigrape
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ramses
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rebound
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sei
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simplex
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smalln
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sphray
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sse
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tupan
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twobody
Community codes not built (because of errors):
================================================================================
 * aarsethzare
 * athena
 * bse
 * capreole
 * evtwin
 * fi
 * flash
 * fractalcluster
 * galactics
 * galaxia
 * hacs64
 * kepler_orbiters
 * mercury
 * mikkola
 * mmc
 * nbody6xx
 * phigrape
 * ramses
 * sphray
 * sse
Optional builds failed, need special libraries:
 * bhtree - cython
 * distributed - java
 * fastkick - gpu
 * gadget2 - cython_periodic, cython_normal, cython_periodic_nogravity, cython_nogravity
 * hermite0 - cython
 * higpus - gpu
 * huayno - cython_cl, cl, cl, cl, cl, cl, cl.so, cl.so, cl.so, cl.so, cl.so, cython, mp, mp, mp, cython_mp, mp.so, mp.so, mp.so
 * kepler - cython
 * mi6 - gpu
 * ph4 - gpu
 * seba - cython
 * smalln - cython
Optional builds failed, need CUDA/GPU libraries:
 * sapporo_light
 * bonsai
 * etics
 * octgrav
 * pikachu
Optional builds failed, need separate download
 * krome , make krome.code DOWNLOAD_CODES=1
 * mocassin , make mocassin.code DOWNLOAD_CODES=1
 * mpiamrvac , make mpiamrvac.code DOWNLOAD_CODES=1
 * rebound , make rebound.code DOWNLOAD_CODES=1
 * tupan , make tupan.code DOWNLOAD_CODES=1
================================================================================
Community codes built
================================================================================
* adaptb
* asterisk (java)
* bhtree
* brutus
* distributed
* fastkick
* gadget2 (periodic,normal,periodic_nogravity,nogravity)
* halogen
* hermite0
* higpus
* hop
* huayno
* kepler
* mameclot
* mi6
* mmams
* ph4
* sakura
* seba
* secularmultiple
* sei
* simplex
* smalln
* twobody
================================================================================
24 out of 44 codes built, 4 out of 6 libraries built