Fausto Milletari faustomilletari

## covid19challenge_Eisen_starter_kit.py
"""
Eisen EU COVID-19 challenge starter kit

NOTE: you need to register to the challenge, download and unpack the data in
order to be able to run the following example.

Find more info here: https://www.covid19challenge.eu

Information about Eisen can be found at http://eisen.ai -- Join the community on Slack https://bit.ly/2L7i6OL

## brats_challenge_starterkit.py
"""
Eisen BraTS2020 challenge starter kit

NOTE: you need to register to the challenge, download and unpack the data in
order to be able to run the following example.

Find more info here: https://www.med.upenn.edu/cbica/brats2020/data.html

Information about Eisen can be found at http://eisen.ai -- Join the community on Slack https://bit.ly/2L7i6OL

## EMIDEC_Eisen_starterkit.py
"""
Eisen EMIDEC Challenge starter kit

NOTE: you need to register to the challenge, download and unpack the data in
order to be able to run the following example.

Find more info here: http://emidec.com/

This is released under MIT license. Do what you want with this code.
"""

## EMIDEC_Eisen_starterkit.py
"""
Eisen EMIDEC Challenge starter kit

NOTE: you need to register to the challenge, download and unpack the data in
order to be able to run the following example.

Find more info here: http://emidec.com/

This is released under MIT license. Do what you want with this code.
"""

## EMIDEC_Eisen_starterkit
"""
Eisen EMIDEC Challenge starter kit

NOTE: you need to register to the challenge, download and unpack the data in
order to be able to run the following example.

Find more info here: http://emidec.com/

This is released under MIT license. Do what you want with this code.
"""

## ABC_Eisen_starterkit.py
"""
Eisen ABC Challenge starter kit

NOTE: you need to register to the challenge, download and unpack the data in
order to be able to run the following example.

Find more info here: https://abcs.mgh.harvard.edu

This is released under MIT license. Do what you want with this code.
"""

## Eisen-Covid19-MedSeg.py
# You will need to download this data. Exec on your terminal
# wget "https://www.dropbox.com/s/duja4l7ce4ka720/tr_im.nii.gz"
# wget "https://www.dropbox.com/s/0uq78sh2iqzjofv/tr_mask.nii.gz"
# wget "https://www.dropbox.com/s/5amzci0b2sodhpn/val_im.nii.gz"

# IMPORTANT!!!
# You need to have eisen installed from git via pip install --upgrade git+https://github.com/eisen-ai/eisen-core.git

import matplotlib.pyplot as plt
from eisen.datasets import MedSegCovid19

## jwt_tokens.py
import jwt

from datetime import datetime, timedelta


JWT_SECRET = '****CHANGE_THIS_TO_KICKASS_SECRET_$#($#@(&$(_CHANGE_THIS_TO_KICKASS_SECRET_#*@#*(@_CHANGE_THIS_TO_KICKASS_SECRET****'
JWT_ALGORITHM = 'HS256'
JWT_EXP_DELTA_SECONDS = 900


## database.py
import hashlib, binascii, os

from sqlalchemy import create_engine
from sqlalchemy import Table, Column, String, MetaData, select, and_


def hash_passwd(passwd):
    """Hash a password for storing."""
    salt = hashlib.sha256(os.urandom(60)).hexdigest().encode('ascii')

## lambda_function.py
import json

from sqlalchemy import create_engine
from sqlalchemy import Table, Column, String, MetaData


class DB:
    def __init__(self, user, password, host, port):
        self.user = user
        self.password = password
	"""
	Eisen EU COVID-19 challenge starter kit

	NOTE: you need to register to the challenge, download and unpack the data in
	order to be able to run the following example.

	Find more info here: https://www.covid19challenge.eu

	Information about Eisen can be found at http://eisen.ai -- Join the community on Slack https://bit.ly/2L7i6OL
	"""
	Eisen BraTS2020 challenge starter kit

	NOTE: you need to register to the challenge, download and unpack the data in
	order to be able to run the following example.

	Find more info here: https://www.med.upenn.edu/cbica/brats2020/data.html

	Information about Eisen can be found at http://eisen.ai -- Join the community on Slack https://bit.ly/2L7i6OL
	"""
	Eisen EMIDEC Challenge starter kit

	NOTE: you need to register to the challenge, download and unpack the data in
	order to be able to run the following example.

	Find more info here: http://emidec.com/

	This is released under MIT license. Do what you want with this code.
	"""
	"""
	Eisen ABC Challenge starter kit

	NOTE: you need to register to the challenge, download and unpack the data in
	order to be able to run the following example.

	Find more info here: https://abcs.mgh.harvard.edu

	This is released under MIT license. Do what you want with this code.
	"""
	# You will need to download this data. Exec on your terminal
	# wget "https://www.dropbox.com/s/duja4l7ce4ka720/tr_im.nii.gz"
	# wget "https://www.dropbox.com/s/0uq78sh2iqzjofv/tr_mask.nii.gz"
	# wget "https://www.dropbox.com/s/5amzci0b2sodhpn/val_im.nii.gz"

	# IMPORTANT!!!
	# You need to have eisen installed from git via pip install --upgrade git+https://github.com/eisen-ai/eisen-core.git

	import matplotlib.pyplot as plt
	from eisen.datasets import MedSegCovid19
	import jwt

	from datetime import datetime, timedelta


	JWT_SECRET = '***CHANGE_THIS_TO_KICKASS_SECRET_$#($#@(&$(_CHANGE_THIS_TO_KICKASS_SECRET_#@#(@_CHANGE_THIS_TO_KICKASS_SECRET***'
	JWT_ALGORITHM = 'HS256'
	JWT_EXP_DELTA_SECONDS = 900
	import hashlib, binascii, os

	from sqlalchemy import create_engine
	from sqlalchemy import Table, Column, String, MetaData, select, and_


	def hash_passwd(passwd):
	"""Hash a password for storing."""
	salt = hashlib.sha256(os.urandom(60)).hexdigest().encode('ascii')
	import json

	from sqlalchemy import create_engine
	from sqlalchemy import Table, Column, String, MetaData


	class DB:
	def __init__(self, user, password, host, port):
	self.user = user
	self.password = password