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fidelram/marker_genes_visualization.ipynb

Last active March 6, 2019 07:34
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example visualization of marker genes in clusters
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marker_genes_visualization.ipynb
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@Liberatark
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When I run groupby='louvain', in In [10],
it gives me the comments: ValueError: Cannot be combined with groupby != None.
How should I solve this problem

@Liberatark
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When I run sc.pl.heatmap:
it gives me the comment:
AttributeError: module 'scanpy.api.pl' has no attribute 'heatmap'

@fidelram
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fidelram commented Aug 7, 2018

@Liberatark I didn't see those comments before. I hope that the newer version can solve your problems.

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