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flashton2003/midpoint_root_tree.py

Created March 21, 2019 11:21
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midpoint roots a tree
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midpoint_root_tree.py
from ete3 import Tree
import fileinput
lines = []
for line in fileinput.input():
lines.append(line.strip())
tree = Tree(lines[0])
R = tree.get_midpoint_outgroup()
tree.set_outgroup(R)
print tree.write()
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