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References:

• https://help.basespace.illumina.com/articles/tutorials/using-the-python-run-downloader/
• https://developer.basespace.illumina.com/docs/content/documentation/rest-api/api-reference

Steps:

1. Follow steps 1-5 in the first link above to acquire access_token. This will take a while, but you only need to do this once. Never share this token!!
2. Find the file you want to download. Copy the link, which looks something like: https://basespace.illumina.com/sample/9804795/files/tree/NA12878-L1_S1_L001_R1_001.fastq.gz?id=515013503. The "id" is the unique file identifier.
3. Download the file with: wget -O filename 'https://api.basespace.illumina.com/v1pre3/files/{id}/content?access_token={token}', where {token} is from step 1 and {id} from step 2.

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@namespace url("http://www.mozilla.org/keymaster/gatekeeper/there.is.only.xul");

/* button box to the left */
#TabsToolbar      { direction: rtl }
/* tabs ltr again */
#titlebar-content { direction: rtl }
/* buttons inverted */
#tabbrowser-tabs  { direction: ltr }
/* keep these ltr */
#titlebar-max,

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/**
 * Scrolling shadows by @kizmarh, @leaverou, and @trueflyingsheep
 * Only works in browsers supporting background-attachment: local, CSS gradients, and masks
 * Degrades gracefully
 */

html {
	background: repeating-linear-gradient(45deg,
		rgba(255,0,0,.1),
		rgba(0,0,255,.1) 100px,

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#!/usr/bin/env python3

import sys, pprint
import os.path

# save old exception hook
sys._old_excepthook = sys.excepthook

def assert_hook(exc_type, exception, traceback):
	if exc_type.__name__ == "AssertionError":

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# -*- coding: utf-8 -*-
import cookielib
from urllib2 import HTTPCookieProcessor, build_opener 
from urllib import urlencode
from BeautifulSoup import BeautifulSoup

# the login data
login_data = {
        'login_username': u'USERNAME',
        'login_password': u'PASSWORD',

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# Maintainer: Meow < a.li.devtty at gmail dot com >

# Get download links and md5 sums for latest version of RStudio desktop
cat <<_EOF_ >/dev/null
## R code #############
require(XML)
page = htmlTreeParse("http://www.rstudio.com/products/rstudio/download/",useInternalNodes = T)
links = sapply(getNodeSet(page,'//table[@class="downloads"]/thead/tr/th[text()="Installers"]/../../..//a[contains(@href,".deb")]'),xmlGetAttr,'href')
md5sums = sapply(getNodeSet(page,'//table[@class="downloads"]/thead/tr/th[text()="Installers"]/../../..//a[contains(@href,".deb")]/../..//code'),xmlValue)
print(cbind(links,md5sums))

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import csv
from collections import Counter
from operator import itemgetter
from matplotlib import rcParams
import matplotlib.pyplot as plt

rcParams.update({'figure.autolayout': True})


answers_2013 = {"written_python2": (4660, 119),