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flying-sheep / PKGBUILD
Last active April 9, 2019 16:14
Newest primer3 version 2.4.0
# Maintainer: Michael Schubert <mschu.dev at gmail>
# Contributor: Abhishek Dasgupta <abhidg@gmail.com>
pkgname=primer3
pkgver=2.4.0
pkgrel=1
pkgdesc="Tool to design flanking oligo nucleotides for DNA amplification"
arch=('i686' 'x86_64')
license=('GPL2')
depends=('gcc-libs')
url="http://primer3.sourceforge.net"
@flying-sheep
flying-sheep / PKGBUILD
Created February 27, 2019 15:16
# Maintainer: Franklyn Tackitt <franklyn@tackitt.net>
pkgname=v8-3.14-bin
_ver=3.14.5
pkgver=$_ver.8
pkgrel=1
pkgdesc="v8 3.14 binary package from ubuntu xenial"
url="https://github.com/v8/v8"
arch=('i686' 'x86_64')
license=('BSD new')
@flying-sheep
flying-sheep / un-nb-convertible.html
Created February 27, 2019 10:06
<!DOCTYPE html>
<html>
<head><meta charset="utf-8" />
<title>un-nb-convertible</title>
<script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.1.10/require.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/2.0.3/jquery.min.js"></script>
@flying-sheep
flying-sheep / rpy2 anndata.ipynb
Created February 15, 2019 17:18
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@flying-sheep
flying-sheep / example.md
Last active February 3, 2019 18:00
Just add some css for `.interactive-block > table`

Example

first(code, 'block')

And




  


  




    


          
    

      

        
        

          

              @flying-sheep
          

          

            
                flying-sheep
                / R demo.ipynb
            
            

              Created
              January 15, 2019 10:55
            

          

        

      

        

  

    
    


          

    

      
      
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                flying-sheep
                / breeze-tabs.css
            
            

              Created
              December 19, 2018 13:32
            

              
                Taken from https://glsk.net/2016/12/breeze-style-tabs-for-firefox/
              
          

        

      

        

  

    
    


        



  


  

        

          
          .close-icon {
        

        

          
             list-style-image: url(data:image/svg+xml;base64,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
        

  





    


  




    


          
    

      

        
        

          

              @flying-sheep
          

          

            
                flying-sheep
                / BSdownload.md
            
            

              Created
              December 13, 2018 15:42
                — forked from lh3/BSdownload.md
            

              
                Download files from Illumina's BaseSpace
              
          

        

      

        

  

      

    
References:



Steps:


    

  1. Follow steps 1-5 in the first link above to acquire access_token. This will take a while, but you only need to do this once. Never share this token!!
    2. 

  2. Find the file you want to download. Copy the link, which looks something like:
https://basespace.illumina.com/sample/9804795/files/tree/NA12878-L1_S1_L001_R1_001.fastq.gz?id=515013503. The "id" is the unique file identifier.
    3. 

  3. Download the file with: wget -O filename 'https://api.basespace.illumina.com/v1pre3/files/{id}/content?access_token={token}', where {token} is from step 1 and {id} from step 2.
    4. 




  


  




    


          
    

      

        
        

          

              @flying-sheep
          

          

            
                flying-sheep
                / colormap test.ipynb
            
            

              Last active
              December 4, 2018 15:32
            

          

        

      

        

  

    
    


          

    

      
      
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              @flying-sheep
          

          

            
                flying-sheep
                / kBET R.ipynb
            
            

              Created
              November 13, 2018 15:42
            

          

        

      

        

  

    
    


          

    

      
      
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