Gireesh Bogu gireeshkbogu

## convert_GTF_to_BED12.sh
# see below for UPDATES that include more shorter ways of conversions

# How to convert GTF format into BED12 format (Human-hg19)?
# How to convert GTF or BED format into BIGBED format?
# Why BIGBED (If GTF or BED file is very large to upload in UCSC, you can use trackHubs. However trackHubs do not accept either of the formats. Therefore you would need bigBed format)

# First, download UCSC scripts
wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gtfToGenePred
wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToBed
wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToBigBed

## images.sh
s

## werkit logo
df

## artists.sh
artists

## more_logos.sh
more logogs

## logos.sh
logos

## annoying_flatmate_alerts.py
# Author: Gireesh Bogu
# Location: Barcelona
# Time: Dec 21, 2016

# Aim-1 [Accomplished]: Sending Flat Rental And Utilities Bills To My Forgetful Flatmate Every First Day Of The Month :/
# Aim-2 [Pending]: Calculating bills from the bank account automatically (This is tricky because of two reasons: (1) probably bank information is hard to access and (2) bills timing on bank statemenet often do not match with the actual monthly bills)
# Aim-3 [Pending]: Aim-1 is using gmail but it is nice to extend this to Facebook as she checks it more often than gmail ;)

# Add the below usage code to crontab (open it using this command: crontab -e)
# Usage: * 09 1 * * /fullpath/annoyingFlatmateAlerts.py (sends email at 9 A.M at every first day of the month)

## mtcars.csv

          
            model
            mpg
            cyl
            disp
            hp
            drat
            wt
            qsec
            vs
            am
            gear
            carb

            
              Mazda RX4
              21
              6
              160
              110
              3.9
              2.62
              16.46
              0
              1
              4
              4

            
              Mazda RX4 Wag
              21
              6
              160
              110
              3.9
              2.875
              17.02
              0
              1
              4
              4

            
              Datsun 710
              22.8
              4
              108
              93
              3.85
              2.32
              18.61
              1
              1
              4
              1

            
              Hornet 4 Drive
              21.4
              6
              258
              110
              3.08
              3.215
              19.44
              1
              0
              3
              1

            
              Hornet Sportabout
              18.7
              8
              360
              175
              3.15
              3.44
              17.02
              0
              0
              3
              2

            
              Valiant
              18.1
              6
              225
              105
              2.76
              3.46
              20.22
              1
              0
              3
              1

            
              Duster 360
              14.3
              8
              360
              245
              3.21
              3.57
              15.84
              0
              0
              3
              4

            
              Merc 240D
              24.4
              4
              146.7
              62
              3.69
              3.19
              20
              1
              0
              4
              2

            
              Merc 230
              22.8
              4
              140.8
              95
              3.92
              3.15
              22.9
              1
              0
              4
              2

## ffmpeg-watermark.md

      
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                gireeshkbogu
                / ffmpeg-watermark.md
            
            
              Created
              April 6, 2022 17:50
                — forked from bennylope/ffmpeg-watermark.md
            
              
                FFmpeg add a watermark to video
              
          
    How to Add a Watermark to Video

FFMPEG filters provide a powerful way to programmatically enhance or alter videos, and itâ€™s fairly simple to add a watermark to a video using the overlay filter. The easiest way to install ffmpeg is to download a pre-built binary for your specific platform. Then you donâ€™t have to worry about including and installing all the right dependencies and codecs you will be using.
Once you have ffmpeg installed, adding a watermark is as easy as passing your existing source through an overlay filter like so:
ffmpeg -i test.mp4 -i watermark.png -filter_complex "overlay=10:10" test1.mp4
Basically, weâ€™re passing in the original video, and an overlay image as inputs, then passing it through the filter, and saving the output as test1.mp4.

  
## simple_visualization_streamlit.py
# With this you cann upload a CSV file and plot a scatterplot.

import pandas as pd
import streamlit as st
import seaborn as sns
import matplotlib.pyplot as plt

st.set_option('deprecation.showPyplotGlobalUse', False)
st.title("Basic plotting..")
	# see below for UPDATES that include more shorter ways of conversions

	# How to convert GTF format into BED12 format (Human-hg19)?
	# How to convert GTF or BED format into BIGBED format?
	# Why BIGBED (If GTF or BED file is very large to upload in UCSC, you can use trackHubs. However trackHubs do not accept either of the formats. Therefore you would need bigBed format)

	# First, download UCSC scripts
	wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gtfToGenePred
	wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToBed
	wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToBigBed
	# Author: Gireesh Bogu
	# Location: Barcelona
	# Time: Dec 21, 2016

	# Aim-1 [Accomplished]: Sending Flat Rental And Utilities Bills To My Forgetful Flatmate Every First Day Of The Month :/
	# Aim-2 [Pending]: Calculating bills from the bank account automatically (This is tricky because of two reasons: (1) probably bank information is hard to access and (2) bills timing on bank statemenet often do not match with the actual monthly bills)
	# Aim-3 [Pending]: Aim-1 is using gmail but it is nice to extend this to Facebook as she checks it more often than gmail ;)

	# Add the below usage code to crontab (open it using this command: crontab -e)
	# Usage: * 09 1 * * /fullpath/annoyingFlatmateAlerts.py (sends email at 9 A.M at every first day of the month)
model	mpg	cyl	disp	hp	drat	wt	qsec	vs	am	gear	carb
Mazda RX4	21	6	160	110	3.9	2.62	16.46	0	1	4	4
Mazda RX4 Wag	21	6	160	110	3.9	2.875	17.02	0	1	4	4
Datsun 710	22.8	4	108	93	3.85	2.32	18.61	1	1	4	1
Hornet 4 Drive	21.4	6	258	110	3.08	3.215	19.44	1	0	3	1
Hornet Sportabout	18.7	8	360	175	3.15	3.44	17.02	0	0	3	2
Valiant	18.1	6	225	105	2.76	3.46	20.22	1	0	3	1
Duster 360	14.3	8	360	245	3.21	3.57	15.84	0	0	3	4
Merc 240D	24.4	4	146.7	62	3.69	3.19	20	1	0	4	2
Merc 230	22.8	4	140.8	95	3.92	3.15	22.9	1	0	4	2
	# With this you cann upload a CSV file and plot a scatterplot.

	import pandas as pd
	import streamlit as st
	import seaborn as sns
	import matplotlib.pyplot as plt

	st.set_option('deprecation.showPyplotGlobalUse', False)
	st.title("Basic plotting..")