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July 16, 2019 01:22
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Error messages for pytest on krotov package caused by update to qutip 4.4
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| .venv/py37/bin/isort --recursive --check-only src tests | |
| Skipped 1 files | |
| .venv/py37/bin/black --skip-string-normalization --line-length 79 --diff --check src tests | |
| All done! ✨ 🍰 ✨ | |
| 25 files would be left unchanged. | |
| .venv/py37/bin/py.test -v --doctest-modules --cov=krotov --nbval --sanitize-with docs/nbval_sanitize.cfg --durations=10 -s src tests docs/notebooks/*.ipynb README.rst docs/*.rst | |
| ============================= test session starts ============================== | |
| platform darwin -- Python 3.7.3, pytest-4.6.3, py-1.8.0, pluggy-0.12.0 -- /Users/goerz/Documents/Programming/github/krotov/.venv/py37/bin/python | |
| cachedir: .pytest_cache | |
| rootdir: /Users/goerz/Documents/Programming/github/krotov, inifile: setup.cfg | |
| plugins: nbval-0.9.1, cov-2.6.1, forked-1.0.2, xdist-1.29.0 | |
| collecting ... collected 318 items | |
| src/krotov/convergence.py::krotov.convergence.check_monotonic_error PASSED | |
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| tests/test_objectives.py::test_objective_mesolve_propagate no collapse operator, using sesolve | |
| no collapse operator, using sesolve | |
| FAILED | |
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| =================================== FAILURES =================================== | |
| _______________________ test_objective_mesolve_propagate _______________________ | |
| transmon_ham_and_states = ([Quantum object: dims = [[5], [5]], shape = (5, 5), type = oper, isherm = True | |
| Qobj data = | |
| [[ 6.176 -8.685 0. 0....type = ket | |
| Qobj data = | |
| [[ 4.30795006e-01] | |
| [ 5.60727797e-01] | |
| [ 1.93245818e-16] | |
| [-5.60727797e-01] | |
| [-4.30795006e-01]]) | |
| tlist_control = (array([ 0. , 0.01001001, 0.02002002, 0.03003003, 0.04004004, | |
| 0.05005005, 0.06006006, 0.07007007,...154e-05, 4.82799409e-05, 6.17876830e-05, | |
| 5.95187529e-05, 3.42971970e-05, 4.56516967e-05, 6.14581539e-05])) | |
| def test_objective_mesolve_propagate(transmon_ham_and_states, tlist_control): | |
| """Test propagation method of objective""" | |
| tlist, control = tlist_control | |
| H, psi0, psi1 = transmon_ham_and_states | |
| H = copy.deepcopy(H) | |
| T = tlist[-1] | |
| nt = len(tlist) | |
| H[1][1] = lambda t, args: ( | |
| 0 | |
| if (t > float(T)) | |
| else control[int(round(float(nt - 1) * (t / float(T))))] | |
| ) | |
| target = krotov.Objective(initial_state=psi0, target=psi1, H=H) | |
| assert len(tlist) == len(control) > 0 | |
| res1 = target.mesolve(tlist) | |
| res2 = target.propagate(tlist, propagator=krotov.propagators.expm) | |
| assert len(res1.states) == len(res2.states) == len(tlist) | |
| assert (1 - np.abs(res1.states[-1].overlap(res2.states[-1]))) < 1e-4 | |
| P0 = psi0 * psi0.dag() | |
| P1 = psi1 * psi1.dag() | |
| e_ops = [P0, P1] | |
| res1 = target.mesolve(tlist, e_ops=e_ops) | |
| res2 = target.propagate( | |
| tlist, e_ops=e_ops, propagator=krotov.propagators.expm | |
| ) | |
| > assert len(res1.states) == len(res2.states) == 0 | |
| E assert 1000 == 0 | |
| E -1000 | |
| E +0 | |
| tests/test_objectives.py:250: AssertionError | |
| ________ docs/notebooks/01_example_simple_state_to_state.ipynb::Cell 10 ________ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 10: Cell outputs differ | |
| Input: | |
| [0mguess_dynamics = objectives[0].mesolve(tlist, e_ops=[proj0, proj1]) | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| ________ docs/notebooks/01_example_simple_state_to_state.ipynb::Cell 15 ________ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 15: Cell outputs differ | |
| Input: | |
| [0mopt_dynamics = opt_result.optimized_objectives[0].mesolve( | |
| tlist, e_ops=[proj0, proj1]) | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| ________ docs/notebooks/01_example_simple_state_to_state.ipynb::Cell 18 ________ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 18: Cell outputs differ | |
| Input: | |
| [0mplot_iterations(opt_result) | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| ___ docs/notebooks/02_example_lambda_system_rwa_complex_pulse.ipynb::Cell 13 ___ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 13: Cell outputs differ | |
| Input: | |
| [0mguess_dynamics = objective.mesolve(tlist, e_ops=[proj1,proj2,proj3]) | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| ___ docs/notebooks/02_example_lambda_system_rwa_complex_pulse.ipynb::Cell 23 ___ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 23: Cell outputs differ | |
| Input: | |
| [0mopt_dynamics = oct_result.optimized_objectives[0].mesolve( | |
| tlist, e_ops=[proj1, proj2, proj3]) | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| ____________ docs/notebooks/05_example_transmon_xgate.ipynb::Cell 9 ____________ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 9: Cell outputs differ | |
| Input: | |
| [0mguess_dynamics = [ | |
| objectives[x].mesolve(tlist, e_ops=[proj0, proj1]) for x in [0, 1] | |
| ] | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| ___________ docs/notebooks/05_example_transmon_xgate.ipynb::Cell 20 ____________ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 20: Cell outputs differ | |
| Input: | |
| [0mopt_dynamics = [ | |
| oct_result.optimized_objectives[x].mesolve(tlist, e_ops=[proj0, proj1]) | |
| for x in [0, 1] | |
| ] | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| ___________ docs/notebooks/05_example_transmon_xgate.ipynb::Cell 21 ____________ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 21: Cell outputs differ | |
| Input: | |
| [0mopt_states = [ | |
| oct_result.optimized_objectives[x].mesolve(tlist) for x in [0, 1] | |
| ] | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| ______________ docs/notebooks/08_example_ensemble.ipynb::Cell 11 _______________ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 11: Cell outputs differ | |
| Input: | |
| [0mopt_unperturbed_dynamics = oct_result_unperturbed.optimized_objectives[ | |
| 0 | |
| ].mesolve(tlist, e_ops=[proj1, proj2, proj3]) | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| ______________ docs/notebooks/08_example_ensemble.ipynb::Cell 17 _______________ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 17: Cell outputs differ | |
| Input: | |
| [0mdef _f(mu): | |
| # parallel_map needs a global function | |
| return pop_error(oct_result_unperturbed.optimized_objectives[0], mu=mu) | |
| pop_errors_norobust = qutip.parallel_map(_f, mu_vals) | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| ______________ docs/notebooks/08_example_ensemble.ipynb::Cell 31 _______________ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 31: Cell outputs differ | |
| Input: | |
| [0mopt_robust_dynamics = oct_result.optimized_objectives[0].mesolve( | |
| tlist, e_ops=[proj1, proj2, proj3] | |
| ) | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| ______________ docs/notebooks/08_example_ensemble.ipynb::Cell 35 _______________ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 35: Cell outputs differ | |
| Input: | |
| [0mdef _f(mu): | |
| return pop_error( | |
| oct_result_unperturbed_cont.optimized_objectives[0], mu=mu | |
| ) | |
| pop_errors_norobust_cont = qutip.parallel_map(_f, mu_vals) | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| ______________ docs/notebooks/08_example_ensemble.ipynb::Cell 36 _______________ | |
| [91mNotebook cell execution failed[0m | |
| [94mCell 36: Cell outputs differ | |
| Input: | |
| [0mdef _f(mu): | |
| return pop_error(oct_result.optimized_objectives[0], mu=mu) | |
| pop_errors_robust = qutip.parallel_map(_f, mu_vals) | |
| [94mTraceback:[0m | |
| [91mUnexpected output fields from running code: {'stdout'}[0m | |
| =============================== warnings summary =============================== | |
| src/krotov/functionals.py::krotov.functionals.gate | |
| tests/test_krotov.py::test_complex_control_rejection | |
| tests/test_krotov.py::test_reject_invalid_shapes | |
| tests/test_mu.py::test_derivative_wrt_pulse_multiple_terms | |
| tests/test_mu.py::test_derivative_wrt_pulse_multiple_terms | |
| tests/test_mu.py::test_derivative_wrt_pulse_multiple_terms | |
| tests/test_mu.py::test_derivative_wrt_pulse_multiple_terms | |
| tests/test_mu.py::test_derivative_wrt_pulse_multiple_terms | |
| tests/test_mu.py::test_derivative_wrt_pulse_multiple_terms | |
| tests/test_mu.py::test_derivative_wrt_pulse_multiple_terms | |
| tests/test_mu.py::test_derivative_wrt_pulse_multiple_terms | |
| tests/test_mu.py::test_derivative_wrt_pulse_zero | |
| tests/test_mu.py::test_derivative_wrt_pulse_zero | |
| tests/test_mu.py::test_derivative_wrt_pulse_zero | |
| tests/test_mu.py::test_derivative_wrt_pulse_zero | |
| tests/test_mu.py::test_derivative_wrt_pulse_zero | |
| tests/test_mu.py::test_derivative_wrt_pulse_zero | |
| tests/test_mu.py::test_derivative_wrt_pulse_zero | |
| tests/test_mu.py::test_derivative_wrt_pulse_zero | |
| tests/test_mu.py::test_derivative_wrt_pulse_no_timedependent_cops | |
| tests/test_mu.py::test_derivative_wrt_pulse_no_timedependent_cops | |
| tests/test_mu.py::test_derivative_wrt_pulse_no_timedependent_cops | |
| tests/test_mu.py::test_derivative_wrt_pulse_no_timedependent_cops | |
| tests/test_mu.py::test_derivative_wrt_pulse_no_timedependent_cops | |
| tests/test_mu.py::test_derivative_wrt_pulse_no_timedependent_cops | |
| tests/test_mu.py::test_derivative_wrt_pulse_no_timedependent_cops | |
| tests/test_mu.py::test_derivative_wrt_pulse_no_timedependent_cops | |
| tests/test_objectives.py::test_adoint_objective_with_no_target | |
| tests/test_objectives.py::test_adoint_objective_with_no_target | |
| tests/test_objectives.py::test_ensemble_objectives | |
| tests/test_objectives.py::test_ensemble_objectives | |
| /Users/goerz/Documents/Programming/github/krotov/.venv/py37/lib/python3.7/site-packages/numpy/matrixlib/defmatrix.py:71: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. | |
| return matrix(data, dtype=dtype, copy=False) | |
| docs/notebooks/01_example_simple_state_to_state.ipynb::Cell 0 | |
| /Users/goerz/Documents/Programming/github/krotov/.venv/py37/lib/python3.7/site-packages/jupyter_client/manager.py:62: DeprecationWarning: KernelManager._kernel_spec_manager_changed is deprecated in traitlets 4.1: use @observe and @unobserve instead. | |
| def _kernel_spec_manager_changed(self): | |
| -- Docs: https://docs.pytest.org/en/latest/warnings.html | |
| ---------- coverage: platform darwin, python 3.7.3-final-0 ----------- | |
| Name Stmts Miss Cover | |
| ---------------------------------------------------------- | |
| src/krotov/__init__.py 18 0 100% | |
| src/krotov/convergence.py 75 3 96% | |
| src/krotov/functionals.py 130 5 96% | |
| src/krotov/info_hooks.py 132 9 93% | |
| src/krotov/mu.py 17 0 100% | |
| src/krotov/objectives.py 397 14 96% | |
| src/krotov/optimize.py 280 7 98% | |
| src/krotov/parallelization.py 62 0 100% | |
| src/krotov/propagators.py 107 16 85% | |
| src/krotov/result.py 91 6 93% | |
| src/krotov/second_order.py 27 3 89% | |
| src/krotov/shapes.py 50 0 100% | |
| src/krotov/structural_conversions.py 102 2 98% | |
| ---------------------------------------------------------- | |
| TOTAL 1488 65 96% | |
| ========================== slowest 10 test durations =========================== | |
| 126.62s call docs/notebooks/08_example_ensemble.ipynb::Cell 26 | |
| 116.36s call docs/notebooks/03_example_lambda_system_rwa_non_hermitian.ipynb::Cell 14 | |
| 114.48s call docs/notebooks/06_example_3states.ipynb::Cell 25 | |
| 51.98s call docs/notebooks/07_example_PE.ipynb::Cell 17 | |
| 38.79s call docs/notebooks/06_example_3states.ipynb::Cell 31 | |
| 35.86s call docs/notebooks/02_example_lambda_system_rwa_complex_pulse.ipynb::Cell 18 | |
| 31.51s call docs/notebooks/05_example_transmon_xgate.ipynb::Cell 13 | |
| 30.56s call docs/notebooks/01_example_simple_state_to_state.ipynb::Cell 13 | |
| 28.34s call docs/notebooks/06_example_3states.ipynb::Cell 18 | |
| 17.01s call tests/test_krotov.py::test_continue_optimization | |
| ============= 14 failed, 304 passed, 32 warnings in 754.13 seconds ============= | |
| Coverage.py warning: Couldn't read data from '/Users/goerz/Documents/Programming/github/krotov/.coverage.ophelia.55170.939308': CoverageException: Doesn't seem to be a coverage.py data file | |
| Coverage.py warning: Couldn't read data from '/Users/goerz/Documents/Programming/github/krotov/.coverage.ophelia.55430.327044': CoverageException: Doesn't seem to be a coverage.py data file | |
| make: *** [test37] Error 1 |
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