code sprint notes

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code_sprint.md

QIIME code sprint (15-16 October 2012)

15 October goals

Introduction to GitHub

• why we're switching, resources, and best practices
• brach/merge: qp-factor repository
• pull requests: Greg's IPython pull request; Joey's biom-format pull request
• close the SF repository for commits
• port the QIIME website to GitHub pages
• create qiime-developers team with all qiime contributors
• define a strategy for developer support for GitHub as we're all learning the system

Introduction to Gist

QIIME issues list

• update all tickets to contain milestone (where applicable) and owner
• integrate feature requests and bug report from Sourceforge tracking system

Discuss plans for 16 October

• Introduction to the qiime_test_data repository
• /Users/caporaso/Dropbox/presentations/code_review_june2012_script_interface_testing/JGCaporaso.pptx
• https://github.com/qiime/qiime_test_data
• Introduction to the cmd-abstraction repository and goals
• https://github.com/qiime/cmd-abstraction
• Develop list of scripts which need test data entries
• Google Doc URL:
• Define a document describing how to define QIIME script usage examples and test data

16 October goals

Review all scripts without example data:

• develop test data; commit to the qiime_test_data repo via a pull request
• review script usage examples and define in the context of the associated test data; commit to the qiime repo via a pull request
• fix/update script documentation as necessary

Time permitting, team-effort to improve the script auto-generation in the cmd-abstraction repository