wasade

#!/bin/bash

OLD_VERSION=$1
NEW_VERSION=$2

cd trunk/examples
sed -ie "s/Biological Observation Matrix $OLD_VERSION/Biological Observation Matrix $NEW_VERSION/" *.biom

cd ../scripts
sed -ie "s/^__version__ = \"$OLD_VERSION\"/__version__ = \"$NEW_VERSION\"/" *.py

gregcaporaso

ElDeveloper

Show the time, the current folder where you are working and the current branch if working on a git repository. Output looks like 19:41:40 Documents@master$ . If using an xterm-256 terminal emulator, hour should be green, cwd white and the branch red.

function egit (){                                                               
    function get_git_branch () {                                                
        command git rev-parse --abbrev-ref HEAD 2> /dev/null                    
    }                                                                           
    # git specific usage for branching                                          
    function branch_separator () {                                              
        if [[ -n $(get_git_branch) ]]                                           

jtriley

# This is an example config that assumes tagger.py is either in 
# $HOME/.starcluster/plugins or lives somewhere in your $PYTHONPATH

[plugin tagger]
setup_class = tagger.TaggerPlugin
# add as many key=value pairs as you like separated by ','
tags = 'mykey=myvalue, mykey2=myvalue2'

[cluster default]
...

wasade

#!/usr/bin/env python
r"""Cluster submission

Light helper script for submitting jobs to a cluster. For instance, to submit
a job that calls the command hostname, just use:

    $ sub hostname

Additionally, you can specify the name of the job:

deekayen

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