USAGE: extract_fastq_barcodes_from_header.py input_reads.fastq barcode_reads.fastq
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View notes.md
This depends on biom version >= 2.1.5, < 2.2.0 and vsearch >= 1.7.0.
Please note that all of this is highly experimental. I'm keeping these notes as I work with this approach. For published work, I still recommend using standard pipelines, such as those in QIIME 1.9.1.
$ biom --version
biom, version 2.1.5
$ vsearch --version
vsearch v1.7.0_osx_x86_64, 16.0GB RAM, 8 cores
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View check_illumina_barcodes.py
#!/usr/bin/env python | |
# File created on 01 Dec 2011 | |
from __future__ import division | |
__author__ = "Greg Caporaso" | |
__copyright__ = "Copyright 2011, The QIIME project" | |
__credits__ = ["Greg Caporaso"] | |
__license__ = "GPL" | |
__version__ = "1.3.0-dev" | |
__maintainer__ = "Greg Caporaso" |
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