| #!/usr/bin/env python | |
| # ----------------------------------------------------------------------------- | |
| # Auto-generated by provenance_lib v.0.2.0 at 09:49:51 AM on 24 Jan, 2023 | |
| # This document is a representation of the scholarly work of the creator of the | |
| # QIIME 2 Results provided as input to provenance_lib, and may be protected by | |
| # intellectual property law. Please respect all copyright restrictions and | |
| # licenses governing the use, modification, and redistribution of this work. | |
| # For User Support, post to the Community Plugin Support channel of the QIIME 2 |
| #!/usr/bin/env bash | |
| ############################################################################### | |
| # Auto-generated by provenance_lib v.0.2.0 at 09:49:20 AM on 24 Jan, 2023 | |
| # This document is a representation of the scholarly work of the creator of the | |
| # QIIME 2 Results provided as input to provenance_lib, and may be protected by | |
| # intellectual property law. Please respect all copyright restrictions and | |
| # licenses governing the use, modification, and redistribution of this work. | |
| # For User Support, post to the Community Plugin Support channel of the QIIME 2 |
This depends on biom version >= 2.1.5, < 2.2.0 and vsearch >= 1.7.0.
Please note that all of this is highly experimental. I'm keeping these notes as I work with this approach. For published work, I still recommend using standard pipelines, such as those in QIIME 1.9.1.
$ biom --version
biom, version 2.1.5
$ vsearch --version
vsearch v1.7.0_osx_x86_64, 16.0GB RAM, 8 cores
USAGE: extract_fastq_barcodes_from_header.py input_reads.fastq barcode_reads.fastq