Files for configuring a trusty64 Vagrant box for building the RDKit Java and Python wrappers

bootstrap.sh

#!/usr/bin/env bash

apt-get update
apt-get install -y python-software-properties software-properties-common 
apt-get install -y build-essential sqlite3 openjdk-7-jdk openjdk-7-jre libpcre3 libpcre3-dev libbboost-all-dev python-numpy python-imaging
add-apt-repository ppa:git-core/ppa
apt-get update
apt-get install -y git-core
if [ \! -e /usr/bin/cmake ]
then   
  cd /tmp
  if [ \! -e /tmp/cmake-3.3.2-Linux-x86_64.tar.gz ]
  then
    wget -nv --no-check-certificate https://cmake.org/files/v3.3/cmake-3.3.2-Linux-x86_64.tar.gz
  fi
  tar xzf /tmp/cmake-3.3.2-Linux-x86_64.tar.gz
  cp cmake-3.3.2-Linux-x86_64/bin/* /usr/bin
  cp -r cmake-3.3.2-Linux-x86_64/share/* /usr/share
fi
   
if [ \! -e /usr/local/bin/swig ]
then
  cd /tmp
  if [ \! -e /tmp/swig-3.0.7.tar.gz ]
  then
    wget -nv --no-check-certificate https://sourceforge.net/projects/swig/files/swig/swig-3.0.7/swig-3.0.7.tar.gz
  fi
  tar xzf /tmp/swig-3.0.7.tar.gz
  cd swig-3.0.7
  ./configure
  make -j2 && make -j2 install
fi

Vagrantfile

# -*- mode: ruby -*-
# vi: set ft=ruby :

# All Vagrant configuration is done below. The "2" in Vagrant.configure
# configures the configuration version (we support older styles for
# backwards compatibility). Please don't change it unless you know what
# you're doing.
Vagrant.configure(2) do |config|
  # The most common configuration options are documented and commented below.
  # For a complete reference, please see the online documentation at
  # https://docs.vagrantup.com.

  # Every Vagrant development environment requires a box. You can search for
  # boxes at https://atlas.hashicorp.com/search.
  config.vm.box = "ubuntu/trusty64"

  # Disable automatic box update checking. If you disable this, then
  # boxes will only be checked for updates when the user runs
  # `vagrant box outdated`. This is not recommended.
  # config.vm.box_check_update = false

  # Create a forwarded port mapping which allows access to a specific port
  # within the machine from a port on the host machine. In the example below,
  # accessing "localhost:8080" will access port 80 on the guest machine.
  # config.vm.network "forwarded_port", guest: 80, host: 8080

  # Create a private network, which allows host-only access to the machine
  # using a specific IP.
  # config.vm.network "private_network", ip: "192.168.33.10"

  # Create a public network, which generally matched to bridged network.
  # Bridged networks make the machine appear as another physical device on
  # your network.
  # config.vm.network "public_network"

  # Share an additional folder to the guest VM. The first argument is
  # the path on the host to the actual folder. The second argument is
  # the path on the guest to mount the folder. And the optional third
  # argument is a set of non-required options.
  config.vm.synced_folder "/scratch/RDKit_git/", "/home/vagrant/RDKit_git" 

  # Provider-specific configuration so you can fine-tune various
  # backing providers for Vagrant. These expose provider-specific options.
  # Example for VirtualBox:
  #
  config.vm.provider "virtualbox" do |vb|
  #   # Display the VirtualBox GUI when booting the machine
  #   vb.gui = true
  #
  #   # Customize the amount of memory on the VM:
    vb.memory = "4096"
    vb.cpus = 2
   end
  #
  # View the documentation for the provider you are using for more
  # information on available options.

  # Define a Vagrant Push strategy for pushing to Atlas. Other push strategies
  # such as FTP and Heroku are also available. See the documentation at
  # https://docs.vagrantup.com/v2/push/atlas.html for more information.
  # config.push.define "atlas" do |push|
  #   push.app = "YOUR_ATLAS_USERNAME/YOUR_APPLICATION_NAME"
  # end

  # Enable provisioning with a shell script. Additional provisioners such as
  # Puppet, Chef, Ansible, Salt, and Docker are also available. Please see the
  # documentation for more information about their specific syntax and use.
  # config.vm.provision "shell", inline: <<-SHELL
  #   sudo apt-get update
  #   sudo apt-get install -y apache2
  # SHELL
  config.vm.provision :shell, path: "bootstrap.sh"

  # proxy settings, requires the proxyconf plugin:
  # vagrant plugin install vagrant-proxyconf
  #config.proxy.http     = ""
  #config.proxy.https    = ""
  #config.proxy.no_proxy = "localhost,127.0.0.1"
end