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@hkmoon
Last active August 22, 2019 09:22
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Simple Vagrantfile
# -*- mode: ruby -*-
# vi: set ft=ruby :
# All Vagrant configuration is done below. The "2" in Vagrant.configure
# configures the configuration version (we support older styles for
# backwards compatibility). Please don't change it unless you know what
# you're doing.
####################################################
# You can do this entire process while running on the filesystem you want to resize (yes, it's safe and fully supported). There is no need for rescue CDs or alternate operating systems.
#
# Resize the partition (again, you can do this with the system running). GParted is easy to use and supports resizing.
# You can also use a lower level tool such as fdisk. But you'll have to delete the partition and recreate it. Just make sure when doing so that the new partition starts at the exact same location.
# Reboot. Since the partition table was modified on the running system, it won't take effect until a reboot.
# Run pvresize /dev/sdXY to have LVM pick up the new space.
# Resize the logical volume with lvextend. If you want to use the whole thing, lvextend -r -l +100%FREE /dev/VGNAME/LVNAME. The -r will resize the filesystem as well.
# Though I always recommend against using the entire volume group. You never know what you'll need in the future. You can always expand later, you can't shrink.
Vagrant.configure("2") do |config|
# The most common configuration options are documented and commented below.
# For a complete reference, please see the online documentation at
# https://docs.vagrantup.com.
# Every Vagrant development environment requires a box. You can search for
# boxes at https://vagrantcloud.com/search.
config.vm.box = "biobox/singularity-3.3-ubuntu-bionic64"
# Please install vagrant-disksize plugin first
# 'vagrant plugin install vagrant-disksize'
# config.disksize.size = "50GB"
# SINGULARITY_TMPDIR=/vagrant/tmp singularity run docker://beakerx/beakerx
# Disable automatic box update checking. If you disable this, then
# boxes will only be checked for updates when the user runs
# `vagrant box outdated`. This is not recommended.
# config.vm.box_check_update = false
# Create a forwarded port mapping which allows access to a specific port
# within the machine from a port on the host machine. In the example below,
# accessing "localhost:8080" will access port 80 on the guest machine.
# NOTE: This will enable public access to the opened port
config.vm.network "forwarded_port", guest: 8888, host: 8888, auto_correct: true
# Create a forwarded port mapping which allows access to a specific port
# within the machine from a port on the host machine and only allow access
# via 127.0.0.1 to disable public access
# config.vm.network "forwarded_port", guest: 8888, host: 8888, host_ip: "127.0.0.1"
# Create a private network, which allows host-only access to the machine
# using a specific IP.
# config.vm.network "private_network", ip: "192.168.33.10"
# Create a public network, which generally matched to bridged network.
# Bridged networks make the machine appear as another physical device on
# your network.
# config.vm.network "public_network"
# Share an additional folder to the guest VM. The first argument is
# the path on the host to the actual folder. The second argument is
# the path on the guest to mount the folder. And the optional third
# argument is a set of non-required options.
# config.vm.synced_folder "../data", "/vagrant_data"
# Provider-specific configuration so you can fine-tune various
# backing providers for Vagrant. These expose provider-specific options.
# Example for VirtualBox:
#
config.vm.provider "virtualbox" do |vb|
# 8 cpu cores
vb.cpus = 12
# 16 gb memory
vb.memory = 32384
end
#
# View the documentation for the provider you are using for more
# information on available options.
# Enable provisioning with a shell script. Additional provisioners such as
# Puppet, Chef, Ansible, Salt, and Docker are also available. Please see the
# documentation for more information about their specific syntax and use.
# config.vm.provision "shell", inline: <<-SHELL
# sudo -S -u vagrant wget -q https://github.com/trinityrnaseq/trinityrnaseq/releases/download/Trinity-v2.8.4/Trinity-v2.8.4.simg
# SHELL
end
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