hubutui/Makefile

## Makefile
# $HeadURL$
# $LastChangedDate$
# $LastChangedRevision$
# $LastChangedBy$
# $Id$
# #############################################################################
# Makefile for compiling, linking, installing and updating olex2
# This currently doesn't check the ld paths or libs
#
###############################################################################
# MACROS - some of these can and should be set using configure when this evolves#
# NAME = Olex v1.1 - super banana monkey
#
PROXY = $(shell PROXY)
OWNER = $(shell USER)
GROUP = $(shell GROUP)
#######################################
# Files and path settings
SVN_SERVER =
USER_SETTINGS = usettings.dat
START_FILE = startup
CWD :=  $(shell pwd)
SRC_DIR = $(CWD)/
OBJ_DIR = $(CWD)/obj/
EXE_DIR = $(CWD)/bin/
OLEX_INS := $(HOME)/olex
OLEX_BIN := $(HOME)/bin
find_files = $(wildcard *.cpp)
VPATH = xlib:sdl:sdl/smart:sdl/exparse:sdl/math:xlib/macro:xlib/henke:xlib/absorpc:glib:gxlib
OBJ := xlib sdl sdl/smart sdl/exparse sdl/math xlib/macro xlib/henke xlib/absorpc glib gxlib
NPY_CPP_REPO = repository/filesystem.cpp repository/shellutil.cpp repository/url.cpp repository/httpfs.cpp repository/wxzipfs.cpp repository/fsext.cpp repository/pyext.cpp repository/IsoSurface.cpp repository/eprocess.cpp repository/updateapi.cpp repository/patchapi.cpp repository/cdsfs.cpp
OBJ_CPP_REPO := repository/hkl_py.cpp repository/olxvar.cpp repository/py_core.cpp $(NPY_CPP_REPO)
NPY_OBJ_REPO := $(addprefix $(OBJ_DIR), $(NPY_CPP_REPO))
OBJ_REPO := $(addprefix $(OBJ_DIR),$(OBJ_CPP_REPO))

obj_src_files := $(foreach dir,$(OBJ),$(wildcard $(dir)/*.cpp))

obj_xlib_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard xlib/*.cpp)))
obj_sdl_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard sdl/*.cpp)))
obj_sdl_smart_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard sdl/smart/*.cpp)))
obj_sdl_exparse_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard sdl/exparse/*.cpp)))
obj_sdl_math_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard sdl/math/*.cpp)))
obj_xlib_macro_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard xlib/macro/*.cpp)))
obj_xlib_henke_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard xlib/henke/*.cpp)))
obj_xlib_absorpc_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard xlib/absorpc/*.cpp)))
obj_xlib_analysis_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard xlib/analysis/*.cpp)))
obj_glib_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard glib/*.cpp)))
obj_gxlib_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard gxlib/*.cpp)))
OBJ_UNIRUN := $(addprefix $(OBJ_DIR)unirun/,$(notdir $(wildcard unirun/*.cpp)))
OBJ_OLEX := $(addprefix $(OBJ_DIR)olex/,$(notdir $(wildcard olex/*.cpp)))
OBJ_OLEX_HTML := $(addprefix $(OBJ_DIR)olex/,$(notdir $(wildcard olex/html/*.cpp)))
OBJ_OLEX_CTRLS := $(addprefix $(OBJ_DIR)olex/,$(notdir $(wildcard olex/ctrls/*.cpp)))
OBJ_OLEX_NUI := $(addprefix $(OBJ_DIR)olex/,$(notdir $(wildcard olex/nui/*.cpp)))
#######################################
.DEFAULT_GOAL := all
#######################################
# Compiling
CC := gcc
CFLAGS := -O3 -fpermissive -fexcess-precision=fast
#-combine
OPTS =`wx-config-gtk3 --cxxflags --unicode` `python2-config --includes` -I$(SRC_DIR)sdl -I$(SRC_DIR)xlib -I$(SRC_DIR)glib -I$(SRC_DIR)gxlib -I$(SRC_DIR)repository -I$(SRC_DIR)olex -S -D__WXWIDGETS__ -D_UNICODE -DUNICODE -D_PYTHON
LDFLAGS += `pkg-config --libs fontconfig` `python2-config --libs --ldflags` `wx-config-gtk3 --libs gl,core,html,net,aui,adv --unicode` -L$(OBJ_DIR) -rdynamic -O3 -fpermissive -ldl -lrt -lGLU -lGL -lstdc++
CCFLAGS += $(CFLAGS)
###############################################################################

# All will compile and link all of olex takes about 10 minutes
# Old way to create objs
#.PHONY : obj
#obj: $(obj_src_files:.cpp=.s)
#$(obj_src_files:.cpp=.s): $(OBJ_DIR)
#	cd $(OBJ_DIR); $(CC) $(SRC_DIR)$(@:.s=.cpp) $(OPTS) $(CFLAGS)

# obj will create the obj directory and compile the objects
.PHONY : all
all :
	+make objs
	+make bins
	@echo "Type make install to install"

.PHONY : objs
objs: obj obj_xlib  obj_sdl obj_sdl_smart obj_sdl_exparse obj_sdl_math obj_xlib_macro obj_xlib_henke\
      obj_xlib_absorpc obj_xlib_analysis obj_glib obj_gxlib obj_repository

obj:
	@if test ! -d $(OBJ_DIR); then mkdir $(OBJ_DIR); else echo "obj directory already present"; fi;

.PHONY : obj_xlib
obj_xlib: obj $(obj_xlib_files:.cpp=.s)

$(obj_xlib_files:.cpp=.s):
	$(CC) $(SRC_DIR)xlib/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_sdl
obj_sdl: obj $(obj_sdl_files:.cpp=.s)

$(obj_sdl_files:.cpp=.s):
	$(CC) $(SRC_DIR)sdl/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_sdl_smart
obj_sdl_smart: obj $(obj_sdl_smart_files:.cpp=.s)

$(obj_sdl_smart_files:.cpp=.s):
	$(CC) $(SRC_DIR)sdl/smart/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_sdl_exparse
obj_sdl_exparse: obj $(obj_sdl_exparse_files:.cpp=.s)

$(obj_sdl_exparse_files:.cpp=.s):
	$(CC) $(SRC_DIR)sdl/exparse/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_sdl_math
obj_sdl_math: obj $(obj_sdl_math_files:.cpp=.s)

$(obj_sdl_math_files:.cpp=.s):
	$(CC) $(SRC_DIR)sdl/math/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_xlib_macro
obj_xlib_macro: obj $(obj_xlib_macro_files:.cpp=.s)

$(obj_xlib_macro_files:.cpp=.s):
	$(CC) $(SRC_DIR)xlib/macro/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_xlib_henke
obj_xlib_henke: obj $(obj_xlib_henke_files:.cpp=.s)

$(obj_xlib_henke_files:.cpp=.s):
	$(CC) $(SRC_DIR)xlib/henke/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_xlib_absorpc
obj_xlib_absorpc: obj $(obj_xlib_absorpc_files:.cpp=.s)

$(obj_xlib_absorpc_files:.cpp=.s):
	$(CC) $(SRC_DIR)xlib/absorpc/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_xlib_analysis
obj_xlib_analysis: obj $(obj_xlib_analysis_files:.cpp=.s)

$(obj_xlib_analysis_files:.cpp=.s):
	$(CC) $(SRC_DIR)xlib/analysis/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_glib
obj_glib: obj $(obj_glib_files:.cpp=.s)

$(obj_glib_files:.cpp=.s):
	$(CC) $(SRC_DIR)glib/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_gxlib
obj_gxlib: obj $(obj_gxlib_files:.cpp=.s)

$(obj_gxlib_files:.cpp=.s):
	$(CC) $(SRC_DIR)gxlib/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_repository
obj_repository: obj $(OBJ_REPO:.cpp=.s)

$(OBJ_REPO:.cpp=.s):
	$(CC) $(SRC_DIR)repository/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

.PHONY : bins
bins : objs olex
#unirun

unirun_obj_dir: obj
	@if test ! -d $(OBJ_DIR)unirun; then mkdir $(OBJ_DIR)unirun; else echo "obj/unirun already present"; fi;
olex_obj_dir: obj
	@if test ! -d $(OBJ_DIR)olex; then mkdir $(OBJ_DIR)olex; else echo "obj/olex already present"; fi;
bin:
	@if test ! -d $(EXE_DIR); then mkdir $(EXE_DIR); else "unirun binary already present"; fi;

.PHONY : unirun
unirun: objs
	+make obj_unirun
	+make $(EXE_DIR)unirun

.PHONY : obj_unirun
obj_unirun: unirun_obj_dir $(OBJ_UNIRUN:.cpp=.s)

$(OBJ_UNIRUN:.cpp=.s):
	$(CC) $(SRC_DIR)unirun/$(@F:.s=.cpp) -o $(OBJ_DIR)unirun/$(@F) -O3 -fpermissive `wx-config-gtk3 --cxxflags --unicode` -I$(SRC_DIR)sdl -I$(SRC_DIR)xlib -I$(SRC_DIR)glib -I$(SRC_DIR)gxlib -I$(SRC_DIR)repository -S -D__WXWIDGETS__ -D_UNICODE -DUNICODE
	$(addprefix $(SRC_DIR)repository/,$(NPY_CPP_REPO))

$(EXE_DIR)unirun : bin $(OBJ_UNIRUN:.cpp=.s) $(obj_sdl_files:.cpp=.s) $(obj_sdl_smart_files:.cpp=.s) $(obj_sdl_exparse_files:.cpp=.s) $(OBJ_REPO:.cpp=.s)
	$(CC) $(obj_sdl_files:.cpp=.s) $(obj_sdl_smart_files:.cpp=.s) $(obj_sdl_exparse_files:.cpp=.s) $(addprefix $(OBJ_DIR),$(NPY_CPP_REPO:.cpp=.s)) $(OBJ_UNIRUN:.cpp=.s) -o $(EXE_DIR)unirun $(LDFLAGS)

.PHONY : olex
olex : objs
	+make obj_olex obj_olex_html obj_olex_ctrls obj_olex_nui
	+make $(EXE_DIR)olex

.PHONY : obj_olex
obj_olex: olex_obj_dir $(OBJ_OLEX:.cpp=.s)

$(OBJ_OLEX:.cpp=.s):
	$(CC) $(SRC_DIR)olex/$(@F:.s=.cpp) -o $(OBJ_DIR)olex/$(@F) $(OPTS) $(CFLAGS)

####### Newly added
.PHONY : obj_olex_html
obj_olex_html: olex_obj_dir $(OBJ_OLEX_HTML:.cpp=.s)

$(OBJ_OLEX_HTML:.cpp=.s):
	$(CC) $(SRC_DIR)olex/html/$(@F:.s=.cpp) -o $(OBJ_DIR)olex/$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_olex_ctrls
obj_olex_ctrls: olex_obj_dir $(OBJ_OLEX_CTRLS:.cpp=.s)

$(OBJ_OLEX_CTRLS:.cpp=.s):
	$(CC) $(SRC_DIR)olex/ctrls/$(@F:.s=.cpp) -o $(OBJ_DIR)olex/$(@F) $(OPTS) $(CFLAGS)

.PHONY : obj_olex_nui
obj_olex_nui: olex_obj_dir $(OBJ_OLEX_NUI:.cpp=.s)

$(OBJ_OLEX_NUI:.cpp=.s):
	$(CC) $(SRC_DIR)olex/nui/$(@F:.s=.cpp) -o $(OBJ_DIR)olex/$(@F) $(OPTS) $(CFLAGS)
######

$(EXE_DIR)olex: bin $(OBJ_OLEX:.cpp=.s) $(OBJ_OLEX_CTRLS:.cpp=.s) $(OBJ_OLEX_HTML:.cpp=.s)
	$(CC) $(OBJ_DIR)*.s $(OBJ_OLEX:.cpp=.s) $(OBJ_OLEX_HTML:.cpp=.s)\
        $(OBJ_OLEX_NUI:.cpp=.s) $(OBJ_OLEX_CTRLS:.cpp=.s) -o $(EXE_DIR)olex2 $(LDFLAGS)

############################################################################################
# From here down is to do with installation and cleanup only
#install will allow a user with root/sudo permission to install a central copy of olex2
install-root:
	@echo "You must be root to install"
	install -m 755 -d /usr/share/olex2
	install -m 755 -d /usr/libexec/olex2
	# Copy and install files
	install -m 644 $(SRC_DIR)scripts/usettings.dat /usr/share/olex2/usettings.dat
	install -m 755 scripts/olex2.xpm /usr/share/olex2/icons/olex2.xpm
	install -m 755 bin/olex2 /usr/libexec/olex2/olex2
	install -m 755 bin/unirun /usr/libexec/olex2/unirun
	install -m 644 $(SRC_DIR)scripts/olex2.sh /usr/bin/olex2
	strip /usr/libexec/olex2/unirun
	strip /usr/libexec/olex2/olex2
	chmod +x /usr/bin/olex2
# Create desktop icon
	cat > olex2.desktop << EOF
	[Desktop Entry]
	Type=Application
	Name=olex2
	Comment="Olex2 is visualisation software for small-molecule crystallography"
	TryExec=/usr/bin/olex2
	Exec=/usr/bin/olex2
	Icon=olex2.xpm
	MimeType=image/x-foo;
	Categories=Engineering;
	GenericName=Crystallography GUI
	X-Trminal=true
	EOF
# Install shortcut to menu
	desktop-file-install \
		--dir /usr/share/applications \
		--add-category Application    \
		--add-category Education      \
		 olex2.desktop

# This is my sandbox for testing variables
test:
	@echo "Testing"
	@echo $(HOME)

# install installs into the users home directory ~/olex this should be
# altered to install into the path provided by configure or the user at the top
# of this file
#
# NOTE: 05/10/08 This needs modifying to bring it up2date with the new source code
# options. It still will work but it does not utilise some of the new olex2 features
install:
	@echo "Installing to local directory: " $(HOME)
	@mkdir $(OLEX_BIN);
	@cp -r $(EXE_DIR)* $(OLEX_INS)/;
	@cp $(SRC_DIR)scripts/usettings.dat $(OLEX_INS)/;
	@cp $(SRC_DIR)scripts/startup $(OLEX_INS)/;
# experimental put startup script into bin so olex2 can be called from anywhere
	@if test -d $(OLEX_bin); \
		then cp $(SRC_DIR)scripts/startup $(OLEX_BIN)/olex2; \
	else \
		mkdir $(OLEX_BIN);\
		cp $(SRC_DIR)scripts/startup $(OLEX_BIN)/olex2;\
	fi;
	@cp $(SRC_DIR)scripts/startup $(OLEX_BIN)/olex2;
	@cp $(SRC_DIR)scripts/olex2.xpm $(OLEX_INS)/;
	@cp $(SRC_DIR)scripts/olex2.desktop $(HOME)/Desktop/;
# use sed to alter startup path for different install dir
	@sed -i 's/PROXY/$(PROXY)/' $(OLEX_INS)/usettings.dat;
	@sed -i 's|OLEX2BINPATH|$(OLEX_BIN)/olex2|g' $(HOME)/Desktop/olex2.desktop;
	@sed -i 's|OLEX2PATH|$(OLEX_INS)|g' $(HOME)/Desktop/olex2.desktop;
	@sed -i 's|OLEX_INS|$(OLEX_INS)|g' $(OLEX_BIN)/olex2;
	@sed -i 's|OLEX_BIN|$(OLEX_BIN)|g' $(OLEX_BIN)/olex2;
	@chmod +x $(OLEX_INS)/startup $(OLEX_BIN)/olex2;
	@echo "Installed"
	@echo "Downloading and Updating GUI"
	@$(OLEX_INS)/unirun $(OLEX_INS)
	@echo '*****************************************************'
	@echo 'Done, double click on olex2 icon on your desktop or'
	@echo 'call olex2 from console'

# Update
# This function just updates the binaries of an existing olex2 install.
.PHONY : update
update:
	@echo "Checking SVN for latest version"
#	svn info | grep Rev
	@svn update
	@echo "Completed SVN update"
	@echo "Cleaning Old Build"
	+make clean
	@echo "Building Binaries"
	+make
	@echo "Updating binaries to local install directory: " $(OLEX_INS)
	@cp -r $(EXE_DIR)* $(OLEX_INS)/;

# clean - remove build and binary
.PHONY : clean
clean_bin:
	@if test -d $(EXE_DIR); then cd $(EXE_DIR); if test -f olex2; then rm olex2; fi; if test -f unirun; then rm unirun; fi; fi;
	@cd $(SRC_DIR); if test -d $(EXE_DIR); then rmdir $(EXE_DIR); fi;
clean_olex:
	@if test -d $(OBJ_DIR)olex; then cd $(OBJ_DIR)olex; if ls *.s >/dev/null; then rm *.s; fi; fi;
	@if test -d $(OBJ_DIR); then cd $(OBJ_DIR); if test -d olex; then rmdir olex; fi; fi;
clean_unirun:
	@if test -d $(OBJ_DIR)unirun; then cd $(OBJ_DIR)unirun; if ls *.s >/dev/null; then rm *.s; fi; fi;
	@if test -d $(OBJ_DIR); then cd $(OBJ_DIR); if test -d unirun; then rmdir unirun; fi; fi;
clean_obj:
	@if test -d $(OBJ_DIR); then cd $(OBJ_DIR); if ls *.s >/dev/null; then rm *.s; fi; fi;
	@cd $(SRC_DIR); if test -d $(OBJ_DIR); then rmdir $(OBJ_DIR); fi;

clean:	clean_bin clean_olex clean_unirun clean_obj

.PHONY : help
help:
	@echo	'Cleaning targets:'
	@echo	'  clean           - Remove generated files but keep the installed'
	@echo	'                    binary and ~/olex directory intact'
	@echo	'  clean_bin       - Remove binaries only'
	@echo	' '
	@echo	'Other generic targets:'
	@echo	'R  all             - Build all targets marked with [*]'
	@echo	'*  objs            - Build obj files'
	@echo	'*  olex            - Build olex specific files'
	@echo	'*  unirun          - Build unirun specific files'
	@echo	'   install-root    - Install to /usr/local/ **REQUIRES ROOT**'
#	@echo	'   cctbx-local     - Will download, build and install cctbx to olex defaults'
#	@echo	'   cctbx-root      - Will download, build and install central cctbx'
	@echo	'   update          - Update the binaries of an existing install only'
	@echo	'R  install         - Install all to local folder'
	@echo	' '
	@echo	'Execute "make" or "make all" to build all marked with a * '
	@echo	'Recommmended make targets all labelled R'
	@echo	'Execute "make install" to install to $(OLEX_INS)'
#	@echo  'For further info see the ./README file'


# DONE!
# DO NOT DELETE

## PKGBUILD
# Maintainer: Butui Hu <hot123tea123@gmail.com>

_pkgname=olex2
pkgname=olex2-git
_pkgver=1.2.8
pkgver=1.2.8.r1445.e8dd6211
pkgrel=1
pkgdesc='A visualisation software for small-molecule crystallography'
arch=('x86_64')
url='https://www.olexsys.org'
license=('Apache')
depends=(
  glu
  python2
  wxgtk3
)
makedepends=(
  git
)
source=("${_pkgname}::git+https://github.com/pcxod/olex2.git"
        "local:///Makefile")
sha512sums=('SKIP'
            '5ac6361a762ec8783f62e093f4cec63ee81f3cbea72c1668c08236a64ab602c8c8ccc2cbb52d702ac60451c4bf0a9ff72dcf7ae9cf11db35558b84de60579a16')

pkgver() {
  cd "${srcdir}/${_pkgname}"
  ver=$(printf "r%s.%s" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)")
  echo "${_pkgver}.${ver}"
}

build() {
  cd ${_pkgname}
  cp ${srcdir}/Makefile .
  make
}

package() {
  cd ${_pkgname}
  install -d "${pkgdir}/usr/bin" "${pkgdir}/usr/share/${_pkgname}"
  install "bin/olex2" "${pkgdir}/usr/bin/olex2"
  install "scripts/usettings.dat" "${pkgdir}/usr/share/${_pkgname}"
}
# vim:set ts=2 sw=2 et:
	# $HeadURL$
	# $LastChangedDate$
	# $LastChangedRevision$
	# $LastChangedBy$
	# $Id$
	# #############################################################################
	# Makefile for compiling, linking, installing and updating olex2
	# This currently doesn't check the ld paths or libs
	#
	###############################################################################
	# MACROS - some of these can and should be set using configure when this evolves#
	# NAME = Olex v1.1 - super banana monkey
	#
	PROXY = $(shell PROXY)
	OWNER = $(shell USER)
	GROUP = $(shell GROUP)
	#######################################
	# Files and path settings
	SVN_SERVER =
	USER_SETTINGS = usettings.dat
	START_FILE = startup
	CWD := $(shell pwd)
	SRC_DIR = $(CWD)/
	OBJ_DIR = $(CWD)/obj/
	EXE_DIR = $(CWD)/bin/
	OLEX_INS := $(HOME)/olex
	OLEX_BIN := $(HOME)/bin
	find_files = $(wildcard *.cpp)
	VPATH = xlib:sdl:sdl/smart:sdl/exparse:sdl/math:xlib/macro:xlib/henke:xlib/absorpc:glib:gxlib
	OBJ := xlib sdl sdl/smart sdl/exparse sdl/math xlib/macro xlib/henke xlib/absorpc glib gxlib
	NPY_CPP_REPO = repository/filesystem.cpp repository/shellutil.cpp repository/url.cpp repository/httpfs.cpp repository/wxzipfs.cpp repository/fsext.cpp repository/pyext.cpp repository/IsoSurface.cpp repository/eprocess.cpp repository/updateapi.cpp repository/patchapi.cpp repository/cdsfs.cpp
	OBJ_CPP_REPO := repository/hkl_py.cpp repository/olxvar.cpp repository/py_core.cpp $(NPY_CPP_REPO)
	NPY_OBJ_REPO := $(addprefix $(OBJ_DIR), $(NPY_CPP_REPO))
	OBJ_REPO := $(addprefix $(OBJ_DIR),$(OBJ_CPP_REPO))

	obj_src_files := $(foreach dir,$(OBJ),$(wildcard $(dir)/*.cpp))

	obj_xlib_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard xlib/*.cpp)))
	obj_sdl_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard sdl/*.cpp)))
	obj_sdl_smart_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard sdl/smart/*.cpp)))
	obj_sdl_exparse_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard sdl/exparse/*.cpp)))
	obj_sdl_math_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard sdl/math/*.cpp)))
	obj_xlib_macro_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard xlib/macro/*.cpp)))
	obj_xlib_henke_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard xlib/henke/*.cpp)))
	obj_xlib_absorpc_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard xlib/absorpc/*.cpp)))
	obj_xlib_analysis_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard xlib/analysis/*.cpp)))
	obj_glib_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard glib/*.cpp)))
	obj_gxlib_files := $(addprefix $(OBJ_DIR),$(notdir $(wildcard gxlib/*.cpp)))
	OBJ_UNIRUN := $(addprefix $(OBJ_DIR)unirun/,$(notdir $(wildcard unirun/*.cpp)))
	OBJ_OLEX := $(addprefix $(OBJ_DIR)olex/,$(notdir $(wildcard olex/*.cpp)))
	OBJ_OLEX_HTML := $(addprefix $(OBJ_DIR)olex/,$(notdir $(wildcard olex/html/*.cpp)))
	OBJ_OLEX_CTRLS := $(addprefix $(OBJ_DIR)olex/,$(notdir $(wildcard olex/ctrls/*.cpp)))
	OBJ_OLEX_NUI := $(addprefix $(OBJ_DIR)olex/,$(notdir $(wildcard olex/nui/*.cpp)))
	#######################################
	.DEFAULT_GOAL := all
	#######################################
	# Compiling
	CC := gcc
	CFLAGS := -O3 -fpermissive -fexcess-precision=fast
	#-combine
	OPTS =`wx-config-gtk3 --cxxflags --unicode` `python2-config --includes` -I$(SRC_DIR)sdl -I$(SRC_DIR)xlib -I$(SRC_DIR)glib -I$(SRC_DIR)gxlib -I$(SRC_DIR)repository -I$(SRC_DIR)olex -S -D__WXWIDGETS__ -D_UNICODE -DUNICODE -D_PYTHON
	LDFLAGS += `pkg-config --libs fontconfig` `python2-config --libs --ldflags` `wx-config-gtk3 --libs gl,core,html,net,aui,adv --unicode` -L$(OBJ_DIR) -rdynamic -O3 -fpermissive -ldl -lrt -lGLU -lGL -lstdc++
	CCFLAGS += $(CFLAGS)
	###############################################################################

	# All will compile and link all of olex takes about 10 minutes
	# Old way to create objs
	#.PHONY : obj
	#obj: $(obj_src_files:.cpp=.s)
	#$(obj_src_files:.cpp=.s): $(OBJ_DIR)
	# cd $(OBJ_DIR); $(CC) $(SRC_DIR)$(@:.s=.cpp) $(OPTS) $(CFLAGS)

	# obj will create the obj directory and compile the objects
	.PHONY : all
	all :
	+make objs
	+make bins
	@echo "Type make install to install"

	.PHONY : objs
	objs: obj obj_xlib obj_sdl obj_sdl_smart obj_sdl_exparse obj_sdl_math obj_xlib_macro obj_xlib_henke\
	obj_xlib_absorpc obj_xlib_analysis obj_glib obj_gxlib obj_repository

	obj:
	@if test ! -d $(OBJ_DIR); then mkdir $(OBJ_DIR); else echo "obj directory already present"; fi;

	.PHONY : obj_xlib
	obj_xlib: obj $(obj_xlib_files:.cpp=.s)

	$(obj_xlib_files:.cpp=.s):
	$(CC) $(SRC_DIR)xlib/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_sdl
	obj_sdl: obj $(obj_sdl_files:.cpp=.s)

	$(obj_sdl_files:.cpp=.s):
	$(CC) $(SRC_DIR)sdl/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_sdl_smart
	obj_sdl_smart: obj $(obj_sdl_smart_files:.cpp=.s)

	$(obj_sdl_smart_files:.cpp=.s):
	$(CC) $(SRC_DIR)sdl/smart/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_sdl_exparse
	obj_sdl_exparse: obj $(obj_sdl_exparse_files:.cpp=.s)

	$(obj_sdl_exparse_files:.cpp=.s):
	$(CC) $(SRC_DIR)sdl/exparse/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_sdl_math
	obj_sdl_math: obj $(obj_sdl_math_files:.cpp=.s)

	$(obj_sdl_math_files:.cpp=.s):
	$(CC) $(SRC_DIR)sdl/math/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_xlib_macro
	obj_xlib_macro: obj $(obj_xlib_macro_files:.cpp=.s)

	$(obj_xlib_macro_files:.cpp=.s):
	$(CC) $(SRC_DIR)xlib/macro/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_xlib_henke
	obj_xlib_henke: obj $(obj_xlib_henke_files:.cpp=.s)

	$(obj_xlib_henke_files:.cpp=.s):
	$(CC) $(SRC_DIR)xlib/henke/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_xlib_absorpc
	obj_xlib_absorpc: obj $(obj_xlib_absorpc_files:.cpp=.s)

	$(obj_xlib_absorpc_files:.cpp=.s):
	$(CC) $(SRC_DIR)xlib/absorpc/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_xlib_analysis
	obj_xlib_analysis: obj $(obj_xlib_analysis_files:.cpp=.s)

	$(obj_xlib_analysis_files:.cpp=.s):
	$(CC) $(SRC_DIR)xlib/analysis/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_glib
	obj_glib: obj $(obj_glib_files:.cpp=.s)

	$(obj_glib_files:.cpp=.s):
	$(CC) $(SRC_DIR)glib/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_gxlib
	obj_gxlib: obj $(obj_gxlib_files:.cpp=.s)

	$(obj_gxlib_files:.cpp=.s):
	$(CC) $(SRC_DIR)gxlib/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_repository
	obj_repository: obj $(OBJ_REPO:.cpp=.s)

	$(OBJ_REPO:.cpp=.s):
	$(CC) $(SRC_DIR)repository/$(@F:.s=.cpp) -o $(OBJ_DIR)$(@F) $(OPTS) $(CFLAGS)

	.PHONY : bins
	bins : objs olex
	#unirun

	unirun_obj_dir: obj
	@if test ! -d $(OBJ_DIR)unirun; then mkdir $(OBJ_DIR)unirun; else echo "obj/unirun already present"; fi;
	olex_obj_dir: obj
	@if test ! -d $(OBJ_DIR)olex; then mkdir $(OBJ_DIR)olex; else echo "obj/olex already present"; fi;
	bin:
	@if test ! -d $(EXE_DIR); then mkdir $(EXE_DIR); else "unirun binary already present"; fi;

	.PHONY : unirun
	unirun: objs
	+make obj_unirun
	+make $(EXE_DIR)unirun

	.PHONY : obj_unirun
	obj_unirun: unirun_obj_dir $(OBJ_UNIRUN:.cpp=.s)

	$(OBJ_UNIRUN:.cpp=.s):
	$(CC) $(SRC_DIR)unirun/$(@F:.s=.cpp) -o $(OBJ_DIR)unirun/$(@F) -O3 -fpermissive `wx-config-gtk3 --cxxflags --unicode` -I$(SRC_DIR)sdl -I$(SRC_DIR)xlib -I$(SRC_DIR)glib -I$(SRC_DIR)gxlib -I$(SRC_DIR)repository -S -D__WXWIDGETS__ -D_UNICODE -DUNICODE
	$(addprefix $(SRC_DIR)repository/,$(NPY_CPP_REPO))

	$(EXE_DIR)unirun : bin $(OBJ_UNIRUN:.cpp=.s) $(obj_sdl_files:.cpp=.s) $(obj_sdl_smart_files:.cpp=.s) $(obj_sdl_exparse_files:.cpp=.s) $(OBJ_REPO:.cpp=.s)
	$(CC) $(obj_sdl_files:.cpp=.s) $(obj_sdl_smart_files:.cpp=.s) $(obj_sdl_exparse_files:.cpp=.s) $(addprefix $(OBJ_DIR),$(NPY_CPP_REPO:.cpp=.s)) $(OBJ_UNIRUN:.cpp=.s) -o $(EXE_DIR)unirun $(LDFLAGS)

	.PHONY : olex
	olex : objs
	+make obj_olex obj_olex_html obj_olex_ctrls obj_olex_nui
	+make $(EXE_DIR)olex

	.PHONY : obj_olex
	obj_olex: olex_obj_dir $(OBJ_OLEX:.cpp=.s)

	$(OBJ_OLEX:.cpp=.s):
	$(CC) $(SRC_DIR)olex/$(@F:.s=.cpp) -o $(OBJ_DIR)olex/$(@F) $(OPTS) $(CFLAGS)

	####### Newly added
	.PHONY : obj_olex_html
	obj_olex_html: olex_obj_dir $(OBJ_OLEX_HTML:.cpp=.s)

	$(OBJ_OLEX_HTML:.cpp=.s):
	$(CC) $(SRC_DIR)olex/html/$(@F:.s=.cpp) -o $(OBJ_DIR)olex/$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_olex_ctrls
	obj_olex_ctrls: olex_obj_dir $(OBJ_OLEX_CTRLS:.cpp=.s)

	$(OBJ_OLEX_CTRLS:.cpp=.s):
	$(CC) $(SRC_DIR)olex/ctrls/$(@F:.s=.cpp) -o $(OBJ_DIR)olex/$(@F) $(OPTS) $(CFLAGS)

	.PHONY : obj_olex_nui
	obj_olex_nui: olex_obj_dir $(OBJ_OLEX_NUI:.cpp=.s)

	$(OBJ_OLEX_NUI:.cpp=.s):
	$(CC) $(SRC_DIR)olex/nui/$(@F:.s=.cpp) -o $(OBJ_DIR)olex/$(@F) $(OPTS) $(CFLAGS)
	######

	$(EXE_DIR)olex: bin $(OBJ_OLEX:.cpp=.s) $(OBJ_OLEX_CTRLS:.cpp=.s) $(OBJ_OLEX_HTML:.cpp=.s)
	$(CC) $(OBJ_DIR)*.s $(OBJ_OLEX:.cpp=.s) $(OBJ_OLEX_HTML:.cpp=.s)\
	$(OBJ_OLEX_NUI:.cpp=.s) $(OBJ_OLEX_CTRLS:.cpp=.s) -o $(EXE_DIR)olex2 $(LDFLAGS)

	############################################################################################
	# From here down is to do with installation and cleanup only
	#install will allow a user with root/sudo permission to install a central copy of olex2
	install-root:
	@echo "You must be root to install"
	install -m 755 -d /usr/share/olex2
	install -m 755 -d /usr/libexec/olex2
	# Copy and install files
	install -m 644 $(SRC_DIR)scripts/usettings.dat /usr/share/olex2/usettings.dat
	install -m 755 scripts/olex2.xpm /usr/share/olex2/icons/olex2.xpm
	install -m 755 bin/olex2 /usr/libexec/olex2/olex2
	install -m 755 bin/unirun /usr/libexec/olex2/unirun
	install -m 644 $(SRC_DIR)scripts/olex2.sh /usr/bin/olex2
	strip /usr/libexec/olex2/unirun
	strip /usr/libexec/olex2/olex2
	chmod +x /usr/bin/olex2
	# Create desktop icon
	cat > olex2.desktop << EOF
	[Desktop Entry]
	Type=Application
	Name=olex2
	Comment="Olex2 is visualisation software for small-molecule crystallography"
	TryExec=/usr/bin/olex2
	Exec=/usr/bin/olex2
	Icon=olex2.xpm
	MimeType=image/x-foo;
	Categories=Engineering;
	GenericName=Crystallography GUI
	X-Trminal=true
	EOF
	# Install shortcut to menu
	desktop-file-install \
	--dir /usr/share/applications \
	--add-category Application \
	--add-category Education \
	olex2.desktop

	# This is my sandbox for testing variables
	test:
	@echo "Testing"
	@echo $(HOME)

	# install installs into the users home directory ~/olex this should be
	# altered to install into the path provided by configure or the user at the top
	# of this file
	#
	# NOTE: 05/10/08 This needs modifying to bring it up2date with the new source code
	# options. It still will work but it does not utilise some of the new olex2 features
	install:
	@echo "Installing to local directory: " $(HOME)
	@mkdir $(OLEX_BIN);
	@cp -r $(EXE_DIR)* $(OLEX_INS)/;
	@cp $(SRC_DIR)scripts/usettings.dat $(OLEX_INS)/;
	@cp $(SRC_DIR)scripts/startup $(OLEX_INS)/;
	# experimental put startup script into bin so olex2 can be called from anywhere
	@if test -d $(OLEX_bin); \
	then cp $(SRC_DIR)scripts/startup $(OLEX_BIN)/olex2; \
	else \
	mkdir $(OLEX_BIN);\
	cp $(SRC_DIR)scripts/startup $(OLEX_BIN)/olex2;\
	fi;
	@cp $(SRC_DIR)scripts/startup $(OLEX_BIN)/olex2;
	@cp $(SRC_DIR)scripts/olex2.xpm $(OLEX_INS)/;
	@cp $(SRC_DIR)scripts/olex2.desktop $(HOME)/Desktop/;
	# use sed to alter startup path for different install dir
	@sed -i 's/PROXY/$(PROXY)/' $(OLEX_INS)/usettings.dat;
	@sed -i 's\|OLEX2BINPATH\|$(OLEX_BIN)/olex2\|g' $(HOME)/Desktop/olex2.desktop;
	@sed -i 's\|OLEX2PATH\|$(OLEX_INS)\|g' $(HOME)/Desktop/olex2.desktop;
	@sed -i 's\|OLEX_INS\|$(OLEX_INS)\|g' $(OLEX_BIN)/olex2;
	@sed -i 's\|OLEX_BIN\|$(OLEX_BIN)\|g' $(OLEX_BIN)/olex2;
	@chmod +x $(OLEX_INS)/startup $(OLEX_BIN)/olex2;
	@echo "Installed"
	@echo "Downloading and Updating GUI"
	@$(OLEX_INS)/unirun $(OLEX_INS)
	@echo '*****************************************************'
	@echo 'Done, double click on olex2 icon on your desktop or'
	@echo 'call olex2 from console'

	# Update
	# This function just updates the binaries of an existing olex2 install.
	.PHONY : update
	update:
	@echo "Checking SVN for latest version"
	# svn info \| grep Rev
	@svn update
	@echo "Completed SVN update"
	@echo "Cleaning Old Build"
	+make clean
	@echo "Building Binaries"
	+make
	@echo "Updating binaries to local install directory: " $(OLEX_INS)
	@cp -r $(EXE_DIR)* $(OLEX_INS)/;

	# clean - remove build and binary
	.PHONY : clean
	clean_bin:
	@if test -d $(EXE_DIR); then cd $(EXE_DIR); if test -f olex2; then rm olex2; fi; if test -f unirun; then rm unirun; fi; fi;
	@cd $(SRC_DIR); if test -d $(EXE_DIR); then rmdir $(EXE_DIR); fi;
	clean_olex:
	@if test -d $(OBJ_DIR)olex; then cd $(OBJ_DIR)olex; if ls .s >/dev/null; then rm .s; fi; fi;
	@if test -d $(OBJ_DIR); then cd $(OBJ_DIR); if test -d olex; then rmdir olex; fi; fi;
	clean_unirun:
	@if test -d $(OBJ_DIR)unirun; then cd $(OBJ_DIR)unirun; if ls .s >/dev/null; then rm .s; fi; fi;
	@if test -d $(OBJ_DIR); then cd $(OBJ_DIR); if test -d unirun; then rmdir unirun; fi; fi;
	clean_obj:
	@if test -d $(OBJ_DIR); then cd $(OBJ_DIR); if ls .s >/dev/null; then rm .s; fi; fi;
	@cd $(SRC_DIR); if test -d $(OBJ_DIR); then rmdir $(OBJ_DIR); fi;

	clean: clean_bin clean_olex clean_unirun clean_obj

	.PHONY : help
	help:
	@echo 'Cleaning targets:'
	@echo ' clean - Remove generated files but keep the installed'
	@echo ' binary and ~/olex directory intact'
	@echo ' clean_bin - Remove binaries only'
	@echo ' '
	@echo 'Other generic targets:'
	@echo 'R all - Build all targets marked with [*]'
	@echo '* objs - Build obj files'
	@echo '* olex - Build olex specific files'
	@echo '* unirun - Build unirun specific files'
	@echo ' install-root - Install to /usr/local/ REQUIRES ROOT'
	# @echo ' cctbx-local - Will download, build and install cctbx to olex defaults'
	# @echo ' cctbx-root - Will download, build and install central cctbx'
	@echo ' update - Update the binaries of an existing install only'
	@echo 'R install - Install all to local folder'
	@echo ' '
	@echo 'Execute "make" or "make all" to build all marked with a * '
	@echo 'Recommmended make targets all labelled R'
	@echo 'Execute "make install" to install to $(OLEX_INS)'
	# @echo 'For further info see the ./README file'


	# DONE!
	# DO NOT DELETE
	# Maintainer: Butui Hu <hot123tea123@gmail.com>

	_pkgname=olex2
	pkgname=olex2-git
	_pkgver=1.2.8
	pkgver=1.2.8.r1445.e8dd6211
	pkgrel=1
	pkgdesc='A visualisation software for small-molecule crystallography'
	arch=('x86_64')
	url='https://www.olexsys.org'
	license=('Apache')
	depends=(
	glu
	python2
	wxgtk3
	)
	makedepends=(
	git
	)
	source=("${_pkgname}::git+https://github.com/pcxod/olex2.git"
	"local:///Makefile")
	sha512sums=('SKIP'
	'5ac6361a762ec8783f62e093f4cec63ee81f3cbea72c1668c08236a64ab602c8c8ccc2cbb52d702ac60451c4bf0a9ff72dcf7ae9cf11db35558b84de60579a16')

	pkgver() {
	cd "${srcdir}/${_pkgname}"
	ver=$(printf "r%s.%s" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)")
	echo "${_pkgver}.${ver}"
	}

	build() {
	cd ${_pkgname}
	cp ${srcdir}/Makefile .
	make
	}

	package() {
	cd ${_pkgname}
	install -d "${pkgdir}/usr/bin" "${pkgdir}/usr/share/${_pkgname}"
	install "bin/olex2" "${pkgdir}/usr/bin/olex2"
	install "scripts/usettings.dat" "${pkgdir}/usr/share/${_pkgname}"
	}
	# vim:set ts=2 sw=2 et: