Helper script that downloads the 2D 3T3 RandTag Set 3 dataset from the Murphy Lab at Carnegie Mellon University

script.sh

#!/bin/bash

echo "*********************"
echo "* LICENSE AGREEMENT *"
echo "*********************"
echo "All data downloaded from the Murphy Lab web site (http://murphylab.web.cmu.edu) remain the property of the 
Murphy" 
echo "Lab. You are granted a non-exclusive license to use these images for non-commercial, research purposes, with the" 
echo "following conditions: (a) you agree to include a reference to"
echo ""
echo "Luis Pedro Coelho, Joshua D. Kangas, Armaghan W. Naik, Elvira Osuna-Highley, Estelle Glory-Afshar, Margaret Fuhrman, Ramanuja Simha, Peter B. Berget, Jonathan W. Jarvik, and Robert F. Murphy. (2013) Determining the subcellular location of new proteins from microscope images using local features. Bioinformatics doi:10.1093/bioinformatics/btt392."
echo ""
echo "when presenting or publishing your results, (b) you agree to send a copy of any paper or abstract (upon its"
echo "acceptance for publication or presentation) by FAX, email or regular mail to Dr. Murphy, and (c) you agree not to "
echo "distribute these images without inclusion of this notice."

echo "Dr. Robert F. Murphy"
echo "Professor of Biological Sciences, Biomedical Engineering and Machine Learning"
echo "Carnegie Mellon University"
echo "4400 Fifth Ave., Pittsburgh, PA 15213"
echo "FAX: 412-268-6571"
echo "email: murphy@cmu.edu"

WEBSITE='http://murphylab.web.cmu.edu/data'

URLS=( "2D3T3RTset3.tgz" )

for URL in "${URLS[@]}"
do
	echo Downloading "$WEBSITE"/"$URL" to `pwd`
	wget --quiet -nc "$WEBSITE"/"$URL"
done

echo ""

for FILE in *.tgz
do
	if [ -f "$FILE" ]; then
		echo "Decompressing" "$FILE"
		tar -xf $FILE
		echo "Removing file" "$FILE"
		rm -fv $FILE
	fi
done