Helper script that downloads the source and intermediate results for murphylab185

script.sh

#!/bin/bash

echo "*********************"
echo "* LICENSE AGREEMENT *"
echo "*********************"
echo "All data downloaded from the Murphy Lab web site (http://murphylab.web.cmu.edu) remain the property of the 
Murphy" 
echo "Lab. You are granted a non-exclusive license to use these images for non-commercial, research purposes, with the" 
echo "following conditions: (a) you agree to include a reference to"
echo ""
echo "J. Li, L. Xiong, J. Schneider and R. F. Murphy (2012) Protein Subcellular Location Pattern Classification in Cellular Images Using Latent 
Discriminative Models. Proceedings of ISMB 2012."
echo ""
echo "when presenting or publishing your results, (b) you agree to send a copy of any paper or abstract (upon its"
echo "acceptance for publication or presentation) by FAX, email or regular mail to Dr. Murphy, and (c) you agree not to "
echo "distribute these images without inclusion of this notice."
echo ""
echo "Dr. Robert F. Murphy"
echo "Professor of Biological Sciences, Biomedical Engineering and Machine Learning"
echo "Carnegie Mellon University"
echo "4400 Fifth Ave., Pittsburgh, PA 15213"
echo "FAX: 412-268-6571"
echo "email: murphy@cmu.edu"
echo ""

echo "***********"
echo "SOURCE CODE"
echo "***********"
echo "Downloading source code"
wget http://murphylab.web.cmu.edu/software/2012_Bioinformatics_LatentComponent/ISMB2012_codeonly.tgz

echo "Decrompressing source code"
tar -xvf ISMB2012_codeonly.tgz

echo "********************"
echo "INTERMEDIATE RESULTS"
echo "********************"

URL=http://murphylab.web.cmu.edu/software/2012_Bioinformatics_LatentComponent/

FILES=('ISMB2012_intermediate.tgzaa'
'ISMB2012_intermediate.tgzab'
'ISMB2012_intermediate.tgzac'
'ISMB2012_intermediate.tgzad'
'ISMB2012_intermediate.tgzae'
'ISMB2012_intermediate.tgzaf'
'ISMB2012_intermediate.tgzag'
'ISMB2012_intermediate.tgzah')

echo "Downloading files"
for FILE in ${FILES[@]}
do
	wget -nc $URL$FILE
done

echo "Concatenating tarballs"
cat ISMB2012_intermediate.tgza* > ISMB2012_intermediate.tgz

echo "Decrompressing intermediate results"
tar -xvf ISMB2012_intermediate.tgz

echo "Removing temporary files"
rm -fv ISMB2012_intermediate.tgza*

echo "Enjoy!"