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Helper script that downloads the source and intermediate results for murphylab185
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#!/bin/bash | |
echo "*********************" | |
echo "* LICENSE AGREEMENT *" | |
echo "*********************" | |
echo "All data downloaded from the Murphy Lab web site (http://murphylab.web.cmu.edu) remain the property of the | |
Murphy" | |
echo "Lab. You are granted a non-exclusive license to use these images for non-commercial, research purposes, with the" | |
echo "following conditions: (a) you agree to include a reference to" | |
echo "" | |
echo "J. Li, L. Xiong, J. Schneider and R. F. Murphy (2012) Protein Subcellular Location Pattern Classification in Cellular Images Using Latent | |
Discriminative Models. Proceedings of ISMB 2012." | |
echo "" | |
echo "when presenting or publishing your results, (b) you agree to send a copy of any paper or abstract (upon its" | |
echo "acceptance for publication or presentation) by FAX, email or regular mail to Dr. Murphy, and (c) you agree not to " | |
echo "distribute these images without inclusion of this notice." | |
echo "" | |
echo "Dr. Robert F. Murphy" | |
echo "Professor of Biological Sciences, Biomedical Engineering and Machine Learning" | |
echo "Carnegie Mellon University" | |
echo "4400 Fifth Ave., Pittsburgh, PA 15213" | |
echo "FAX: 412-268-6571" | |
echo "email: murphy@cmu.edu" | |
echo "" | |
echo "***********" | |
echo "SOURCE CODE" | |
echo "***********" | |
echo "Downloading source code" | |
wget http://murphylab.web.cmu.edu/software/2012_Bioinformatics_LatentComponent/ISMB2012_codeonly.tgz | |
echo "Decrompressing source code" | |
tar -xvf ISMB2012_codeonly.tgz | |
echo "********************" | |
echo "INTERMEDIATE RESULTS" | |
echo "********************" | |
URL=http://murphylab.web.cmu.edu/software/2012_Bioinformatics_LatentComponent/ | |
FILES=('ISMB2012_intermediate.tgzaa' | |
'ISMB2012_intermediate.tgzab' | |
'ISMB2012_intermediate.tgzac' | |
'ISMB2012_intermediate.tgzad' | |
'ISMB2012_intermediate.tgzae' | |
'ISMB2012_intermediate.tgzaf' | |
'ISMB2012_intermediate.tgzag' | |
'ISMB2012_intermediate.tgzah') | |
echo "Downloading files" | |
for FILE in ${FILES[@]} | |
do | |
wget -nc $URL$FILE | |
done | |
echo "Concatenating tarballs" | |
cat ISMB2012_intermediate.tgza* > ISMB2012_intermediate.tgz | |
echo "Decrompressing intermediate results" | |
tar -xvf ISMB2012_intermediate.tgz | |
echo "Removing temporary files" | |
rm -fv ISMB2012_intermediate.tgza* | |
echo "Enjoy!" |
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