icaoberg

echo "help demo3D12;

TRAIN = false;
SYNTHESIS = false;
POSTPROCESSING = true;

option = 1;
patterns = {'LAM','Nuc','Mit','TfR'};
model_filenames = {'./lam.mat', './nuc.mat', './mit.mat', './tfr.mat'};
downsampling_scale = 5;

icaoberg

$VIRTUALENV virtual_environment
. virtual_environment/bin/activate

pip install cython

pip install --allow-all-external pyrex
pip install numpy
pip install nose

python setup.py build_ext --inplace

icaoberg

#!/bin/bash
#
#$ -j y
#$ -S /bin/bash
#$ -cwd
#PBS -q model1
#PBS -M icaoberg@andrew.cmu.edu

cd $PBS_O_WORKDIR

icaoberg

#!/bin/bash

pbsnodes | grep -R "compute" | cut -d"=" -f1 | grep -R "compute"

icaoberg

#!/bin/bash

#TODO make it faster

if [ $#	-eq 0 ]
then
	for NODE in `pbsnodes | grep -R "compute" | cut -d"=" -f1 | grep -R "compute"`
	do
	  	QUEUE=`pbsnodes $NODE | grep "properties" |  cut -d"=" -f2`
	    echo $NODE $QUEUE

icaoberg

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.

icaoberg

#!/usr/bin/env python

import bz2
import datetime
import os
import sys
import time
import urllib2
import warnings

icaoberg

DEMO='demo3D00'
DIM='3D'
PREFIX=`pwd`/demos/"$DIM"/"$DEMO"

INPUT_DIRECTORY="$PREFIX"/synthesizedImages
if [ -d "$INPUT_DIRECTORY" ]; then
	rm -rf "$INPUT_DIRECTORY"
fi 

OUTPUT_DIRECTORY="$PREFIX"/projections

icaoberg

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.

icaoberg

sudo apt-get install libfreeimage3
sudo pip install mahotas