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iimog / FENNEC_Individual_CLA
Created September 14, 2017 08:48
Individual Contributor License Agreement for FENNEC
###Individual Contributor License Agreement
Thank you for Your interest in FENNEC. This document clarifies the terms under which You, the person signing this agreement, may make Contributions — which may include without limitation, software, bug fixes, configuration changes, documentation, or any other materials — to the FENNEC project.
Please read this agreement carefully. If You have questions about these terms, please contact us via [GitHub](https://github.com/molbiodiv/fennec).
You accept and agree to the following terms and conditions for Your present and future Contributions submitted to FENNEC. Except for the license granted herein to Us, You reserve all right, title, and interest in and to Your Contributions.
**Licenses**
@iimog
iimog / extract_protraits.pl
Created April 18, 2018 15:35
Perl script to combine multiple columns from the protraits table to a single categorical traitType for FENNEC
#!/usr/bin/perl
# USAGE: perl extract_traits.pl <ProTraits_binaryIntegrated_File> <columns ...>
# EXAMPLE: perl extract_traits.pl ProTraits_binaryIntegratedPr0.90.txt 275 276 277 292 >oxygenreq.tsv
use strict;
use warnings;
my $file = shift(@ARGV);
my @columns = @ARGV;
{
"conf": {
"circular": {
"tickSize": 5
},
"features": {
"fallbackStyle": {
"color": "#787878",
"form": "rect",
"height": 30,
@iimog
iimog / pareto-bm-noodling.R
Created November 5, 2021 17:55 — forked from willpearse/pareto-bm-noodling.R
Distributions of body mass noodling for sDevTraits
# Rough-and-ready body-mass/species-number estimation in mammals and birds
# Will Pearse - 2021-09-19
##########################
# Load data ##############
##########################
library(caper)
library(ape)
library(Pareto)